| ALE | Basics of the Vertical Lagrangian-Remap Method in MOM6 |
| ALE Timestep | Explanation of ALE remapping |
| Baroclinic Momentum Equations | Baroclinic Momentum Equations |
| Barotropic-Baroclinic Coupling | Time-averaged accelerations |
| Barotropic Momentum Equations | Barotropic Momentum Equations |
| Discrete Coriolis Term | |
| Discrete Horizontal and Vertical Grids | Discrete Horizontal and Vertical Grids |
| Discrete Open Boundary Conditions | Discrete Open Boundary Conditions |
| Discrete Pressure Gradient Term | |
| Energetic Consistency | Energetic Consistency |
| Finite Difference Operators | Finite Difference Operators |
| General coordinate equations | General coordinate equations |
| Governing Equations | |
| Notation for equations | |
| PPM Advection Scheme | PPM Advection Scheme |
| Sea Ice Considerations | Sea Ice Coupling |
| Solar Radiation | Penetration of Solar Radiation |
| Specifics | Specifics of the Ocean Model Equations |
| Filtering Timesteps | Filtering Timesteps |
| Equation of State | |
| Diagnostics | Controlling run-time diagnostics and how to add diagnostics to the code |
| Domain Decomposition | |
| Global Orthogonal Grids | Global Orthogonal Grids |
| Horizontal indexing and memory | Conventions for staggering of variables and loops over 2d/3d arrays |
| Parallel I/O | Parallel I/O |
| Regional Orthogonal Grids | Regional Orthogonal Grids |
| Run-time Parameter System | How run-time parameters work in MOM6 |
| Testing | MOM6 Validation and Verification |
| Vertical Orthogonal Grids | Vertical Orthogonal Grids |
| The K-Profile Parameterization | |
| Tracer Advection | Tracer transport schemes |
| Discrete Tracer Transport Equations | Discrete Tracer Transport Equations |
| Horizontal Diffusion | Horizontal diffusion of tracers |
| Passive and Other User-defined Tracers | Tracers beyond temperature and salinity |
| Tracer Fluxes | Tracer Fluxes |
| Tracer Timestep | Overview of Tracer Timestep |
| Tracer Transport Equations | Tracer Transport Equations |
| Vertical Diffusion | Vertical diffusion of tracers |
| Bibliography |
1.8.13