Index

A

absolute_position() (fortran function in module mom_neutral_diffusion) absolute_positions() (fortran function in module mom_neutral_diffusion) absorbremainingsw() (fortran subroutine in module mom_opacity) accel_diag_ptrs (fortran type in module mom_variables) accumulate_net_input() (fortran subroutine in module mom_sum_output) adapt_cs (fortran type in module coord_adapt) adcroft_reciprocal() (fortran function in module mom_dyn_horgrid) (fortran function in module mom_grid) (fortran function in module mom_grid_initialize) add_detangling_kh() (fortran subroutine in module mom_thickness_diffuse) add_diag_to_list() (fortran subroutine in module mom_diag_mediator) add_drag_diffusivity() (fortran subroutine in module mom_set_diffusivity) add_int_tide_diffusivity() (fortran subroutine in module mom_tidal_mixing) add_lotw_bbl_diffusivity() (fortran subroutine in module mom_set_diffusivity) add_mlrad_diffusivity() (fortran subroutine in module mom_set_diffusivity) add_shelf_flux() (fortran subroutine in module mom_ice_shelf) add_shelf_forces() (fortran subroutine in module mom_ice_shelf) add_shelf_pressure() (fortran subroutine in module mom_ice_shelf) add_xyz_method() (fortran subroutine in module mom_diag_mediator) adiabatic() (fortran subroutine in module mom_diabatic_driver) adiabatic_driver_init() (fortran subroutine in module mom_diabatic_driver) adjust_area_mean_to_zero() (fortran subroutine in module mom_spatial_means) adjust_interface_motion() (fortran subroutine in module mom_regridding) adjust_local_bt_cont_types() (fortran subroutine in module mom_barotropic) adjust_salt() (fortran subroutine in module mom_diabatic_aux) adjust_ssh_for_p_atm() (fortran subroutine in module mom) adjustetatofitbathymetry() (fortran subroutine in module mom_state_initialization) adjustgridforintegrity() (fortran subroutine in module mom_ale) adjustment_initialization (module) adjustment_initialize_temperature_salinity() (fortran subroutine in module adjustment_initialization) adjustment_initialize_thickness() (fortran subroutine in module adjustment_initialization) adjustsegmentetatofitbathymetry() (fortran subroutine in module mom_open_boundary) advect_tracer() (fortran subroutine in module mom_tracer_advect) advect_x() (fortran subroutine in module mom_tracer_advect) advect_y() (fortran subroutine in module mom_tracer_advect) advection_test_stock() (fortran function in module advection_test_tracer) advection_test_tracer (module) advection_test_tracer_column_physics() (fortran subroutine in module advection_test_tracer) advection_test_tracer_cs (fortran type in module advection_test_tracer) advection_test_tracer_end() (fortran subroutine in module advection_test_tracer) advection_test_tracer_surface_state() (fortran subroutine in module advection_test_tracer) ale_build_grid() (fortran subroutine in module mom_ale) ale_cs (fortran type in module mom_ale) ale_end() (fortran subroutine in module mom_ale) ale_getcoordinate() (fortran function in module mom_ale) ale_getcoordinateunits() (fortran function in module mom_ale) ale_init() (fortran subroutine in module mom_ale) ale_initregridding() (fortran subroutine in module mom_ale) ale_initthicknesstocoord() (fortran subroutine in module mom_ale)

ale_main() (fortran subroutine in module mom_ale) ale_main_offline() (fortran subroutine in module mom_ale) ale_offline_inputs() (fortran subroutine in module mom_ale) ale_offline_tracer_final() (fortran subroutine in module mom_ale) ale_plm_edge_values() (fortran subroutine in module mom_ale) ale_register_diags() (fortran subroutine in module mom_ale) ale_regrid_accelerated() (fortran subroutine in module mom_ale) ale_remap_init_conds() (fortran function in module mom_ale) ale_remap_scalar() (fortran subroutine in module mom_ale) ale_sponge_cs (fortran type in module mom_ale_sponge) ale_sponge_end() (fortran subroutine in module mom_ale_sponge) ale_update_regrid_weights() (fortran subroutine in module mom_ale) ale_updateverticalgridtype() (fortran subroutine in module mom_ale) ale_writecoordinatefile() (fortran subroutine in module mom_ale) align_aniso_tensor_to_grid() (fortran subroutine in module mom_hor_visc) alloc_bt_cont_type() (fortran subroutine in module mom_variables) alloc_diag_with_id() (fortran subroutine in module mom_diag_mediator) allocate_forcing_by_group() (fortran subroutine in module mom_forcing_type) allocate_forcing_by_ref() (fortran subroutine in module mom_forcing_type) allocate_mech_forcing_by_group() (fortran subroutine in module mom_forcing_type) allocate_mech_forcing_from_ref() (fortran subroutine in module mom_forcing_type) allocate_metrics() (fortran subroutine in module mom_grid) allocate_obc_segment_data() (fortran subroutine in module mom_open_boundary) allocate_rotated_array_integer() (fortran subroutine in module mom_array_transform) allocate_rotated_array_real_2d() (fortran subroutine in module mom_array_transform) allocate_rotated_array_real_3d() (fortran subroutine in module mom_array_transform) allocate_rotated_array_real_4d() (fortran subroutine in module mom_array_transform) allocate_surface_state() (fortran subroutine in module mom_variables) analytic_int_density_dz() (fortran subroutine in module mom_eos) analytic_int_specific_vol_dp() (fortran subroutine in module mom_eos) aof_set_coupler_flux() (fortran function in module atmos_ocean_fluxes_mod) apply_ale_sponge() (fortran subroutine in module mom_ale_sponge) apply_boundary_values() (fortran subroutine in module mom_ice_shelf_dynamics) apply_ctrl_forcing() (fortran subroutine in module mom_controlled_forcing) apply_flux_adjustments() (fortran subroutine in module mom_surface_forcing_gfdl) apply_force_adjustments() (fortran subroutine in module mom_surface_forcing_gfdl) apply_oda_tracer_increments() (fortran subroutine in module mom_oda_driver_mod) apply_sponge() (fortran subroutine in module mom_sponge) apply_topography_edits_from_file() (fortran subroutine in module mom_shared_initialization) apply_velocity_obcs() (fortran subroutine in module mom_barotropic) applyboundaryfluxesinout() (fortran subroutine in module mom_diabatic_aux) applytracerboundaryfluxesinout() (fortran subroutine in module mom_tracer_diabatic) assert() (fortran subroutine in module mom_error_handler) astro_longitudes (fortran type in module mom_tidal_forcing) astro_longitudes_init() (fortran subroutine in module mom_tidal_forcing) atmos_ocean_fluxes_mod (module) attach_cell_methods() (fortran subroutine in module mom_diag_mediator) average_discontinuous_edge_values() (fortran subroutine in module regrid_edge_values) average_value_ppoly() (fortran function in module mom_remapping) axes_grp (fortran type in module mom_diag_mediator)

B

baroclinic_zone_init_temperature_salinity() (fortran subroutine in module baroclinic_zone_initialization) baroclinic_zone_initialization (module) barotropic_cs (fortran type in module mom_barotropic) barotropic_end() (fortran subroutine in module mom_barotropic) barotropic_get_tav() (fortran subroutine in module mom_barotropic) barotropic_init() (fortran subroutine in module mom_barotropic) basin_builder (module) basin_builder_topography() (fortran subroutine in module basin_builder) bcz_params() (fortran subroutine in module baroclinic_zone_initialization) benchmark_init_temperature_salinity() (fortran subroutine in module benchmark_initialization) benchmark_initialization (module) benchmark_initialize_thickness() (fortran subroutine in module benchmark_initialization) benchmark_initialize_topography() (fortran subroutine in module benchmark_initialization) bfb_buoyancy_forcing() (fortran subroutine in module bfb_surface_forcing) bfb_initialization (module) bfb_initialize_sponges_southonly() (fortran subroutine in module bfb_initialization) bfb_set_coord() (fortran subroutine in module bfb_initialization) bfb_surface_forcing (module) bfb_surface_forcing_cs (fortran type in module bfb_surface_forcing) bfb_surface_forcing_init() (fortran subroutine in module bfb_surface_forcing) bilinear_shape_fn_grid() (fortran subroutine in module mom_ice_shelf_dynamics) bilinear_shape_functions() (fortran subroutine in module mom_ice_shelf_dynamics) bilinear_shape_functions_subgrid() (fortran subroutine in module mom_ice_shelf_dynamics) bitcount() (fortran function in module mom_checksums) bkgnd_mixing_cs (fortran type in module mom_bkgnd_mixing) bkgnd_mixing_end() (fortran subroutine in module mom_bkgnd_mixing) bkgnd_mixing_init() (fortran subroutine in module mom_bkgnd_mixing) bound_edge_values() (fortran subroutine in module regrid_edge_values) boundary_impulse_stock() (fortran function in module boundary_impulse_tracer) boundary_impulse_tracer (module) boundary_impulse_tracer_column_physics() (fortran subroutine in module boundary_impulse_tracer) boundary_impulse_tracer_cs (fortran type in module boundary_impulse_tracer) boundary_impulse_tracer_end() (fortran subroutine in module boundary_impulse_tracer) boundary_impulse_tracer_surface_state() (fortran subroutine in module boundary_impulse_tracer)

boundary_k_range() (fortran subroutine in module mom_lateral_boundary_diffusion) bt_cont_to_face_areas() (fortran subroutine in module mom_barotropic) bt_cont_type (fortran type in module mom_variables) bt_mass_source() (fortran subroutine in module mom_barotropic) bt_obc_type (fortran type in module mom_barotropic) btcalc() (fortran subroutine in module mom_barotropic) btstep() (fortran subroutine in module mom_barotropic) build_adapt_column() (fortran subroutine in module coord_adapt) build_and_interpolate_grid() (fortran subroutine in module regrid_interp) build_cubic_interpolant() (fortran subroutine in module p3m_functions) build_grid_adaptive() (fortran subroutine in module mom_regridding) build_grid_arbitrary() (fortran subroutine in module mom_regridding) build_grid_hycom1() (fortran subroutine in module mom_regridding) build_grid_slight() (fortran subroutine in module mom_regridding) build_hycom1_column() (fortran subroutine in module coord_hycom) build_reconstructions_1d() (fortran subroutine in module mom_remapping) build_rho_column() (fortran subroutine in module coord_rho) build_rho_column_iteratively() (fortran subroutine in module coord_rho) build_rho_grid() (fortran subroutine in module mom_regridding) build_sigma_column() (fortran subroutine in module coord_sigma) build_sigma_grid() (fortran subroutine in module mom_regridding) build_slight_column() (fortran subroutine in module coord_slight) build_zstar_column() (fortran subroutine in module coord_zlike) build_zstar_grid() (fortran subroutine in module mom_regridding) buildgridfromh() (fortran subroutine in module mom_remapping) bulk_average() (fortran function in module mom_lateral_boundary_diffusion) bulkmixedlayer() (fortran subroutine in module mom_bulk_mixed_layer) bulkmixedlayer_cs (fortran type in module mom_bulk_mixed_layer) bulkmixedlayer_init() (fortran subroutine in module mom_bulk_mixed_layer) buoyancy_forcing_const() (fortran subroutine in module mom_surface_forcing) buoyancy_forcing_from_data_override() (fortran subroutine in module mom_surface_forcing) buoyancy_forcing_from_files() (fortran subroutine in module mom_surface_forcing) buoyancy_forcing_linear() (fortran subroutine in module mom_surface_forcing) buoyancy_forcing_zero() (fortran subroutine in module mom_surface_forcing)

C

calc_delta_rho_and_derivs() (fortran subroutine in module mom_neutral_diffusion) calc_depth_function() (fortran subroutine in module mom_lateral_mixing_coeffs) calc_h_new_by_dz() (fortran subroutine in module mom_regridding) calc_isoneutral_slopes() (fortran subroutine in module mom_isopycnal_slopes) calc_kappa_shear_vertex() (fortran subroutine in module mom_kappa_shear) calc_qg_leith_viscosity() (fortran subroutine in module mom_lateral_mixing_coeffs) calc_resoln_function() (fortran subroutine in module mom_lateral_mixing_coeffs) calc_shelf_driving_stress() (fortran subroutine in module mom_ice_shelf_dynamics) calc_shelf_visc() (fortran subroutine in module mom_ice_shelf_dynamics) calc_slope_functions() (fortran subroutine in module mom_lateral_mixing_coeffs) calc_slope_functions_using_just_e() (fortran subroutine in module mom_lateral_mixing_coeffs) calc_spec_vol_1d() (fortran subroutine in module mom_eos) calc_spec_vol_derivs_1d() (fortran subroutine in module mom_eos) calc_spec_vol_scalar() (fortran subroutine in module mom_eos) calc_tidal_forcing() (fortran subroutine in module mom_tidal_forcing) calc_visbeck_coeffs() (fortran subroutine in module mom_lateral_mixing_coeffs) calculate_bkgnd_mixing() (fortran subroutine in module mom_bkgnd_mixing) calculate_compress_array() (fortran subroutine in module mom_eos) calculate_compress_linear() (fortran subroutine in module mom_eos_linear) calculate_compress_nemo() (fortran subroutine in module mom_eos_nemo) calculate_compress_scalar() (fortran subroutine in module mom_eos) calculate_compress_teos10() (fortran subroutine in module mom_eos_teos10) calculate_compress_unesco() (fortran subroutine in module mom_eos_unesco) calculate_compress_wright() (fortran subroutine in module mom_eos_wright) calculate_cvmix_conv() (fortran subroutine in module mom_cvmix_conv) calculate_cvmix_shear() (fortran subroutine in module mom_cvmix_shear) calculate_cvmix_tidal() (fortran subroutine in module mom_tidal_mixing) calculate_density_1d() (fortran subroutine in module mom_eos) calculate_density_array() (fortran subroutine in module mom_eos) calculate_density_array_linear() (fortran subroutine in module mom_eos_linear) calculate_density_array_nemo() (fortran subroutine in module mom_eos_nemo) calculate_density_array_teos10() (fortran subroutine in module mom_eos_teos10) calculate_density_array_unesco() (fortran subroutine in module mom_eos_unesco) calculate_density_array_wright() (fortran subroutine in module mom_eos_wright) calculate_density_derivs_1d() (fortran subroutine in module mom_eos) calculate_density_derivs_array() (fortran subroutine in module mom_eos) calculate_density_derivs_array_linear() (fortran subroutine in module mom_eos_linear) calculate_density_derivs_array_nemo() (fortran subroutine in module mom_eos_nemo) calculate_density_derivs_array_teos10() (fortran subroutine in module mom_eos_teos10) calculate_density_derivs_array_wright() (fortran subroutine in module mom_eos_wright) calculate_density_derivs_scalar() (fortran subroutine in module mom_eos) calculate_density_derivs_scalar_linear() (fortran subroutine in module mom_eos_linear) calculate_density_derivs_scalar_nemo() (fortran subroutine in module mom_eos_nemo) calculate_density_derivs_scalar_teos10() (fortran subroutine in module mom_eos_teos10) calculate_density_derivs_scalar_wright() (fortran subroutine in module mom_eos_wright) calculate_density_derivs_unesco() (fortran subroutine in module mom_eos_unesco) calculate_density_scalar() (fortran subroutine in module mom_eos) calculate_density_scalar_linear() (fortran subroutine in module mom_eos_linear) calculate_density_scalar_nemo() (fortran subroutine in module mom_eos_nemo) calculate_density_scalar_teos10() (fortran subroutine in module mom_eos_teos10) calculate_density_scalar_unesco() (fortran subroutine in module mom_eos_unesco) calculate_density_scalar_wright() (fortran subroutine in module mom_eos_wright) calculate_density_second_derivs_array() (fortran subroutine in module mom_eos) calculate_density_second_derivs_array_linear() (fortran subroutine in module mom_eos_linear) calculate_density_second_derivs_array_teos10() (fortran subroutine in module mom_eos_teos10) calculate_density_second_derivs_array_wright() (fortran subroutine in module mom_eos_wright) calculate_density_second_derivs_scalar() (fortran subroutine in module mom_eos) calculate_density_second_derivs_scalar_linear() (fortran subroutine in module mom_eos_linear) calculate_density_second_derivs_scalar_teos10() (fortran subroutine in module mom_eos_teos10) calculate_density_second_derivs_scalar_wright() (fortran subroutine in module mom_eos_wright) calculate_derivs() (fortran subroutine in module mom_diagnostics) calculate_diagnostic_fields() (fortran subroutine in module mom_diagnostics) calculate_energy_diagnostics() (fortran subroutine in module mom_diagnostics) calculate_kappa_shear() (fortran subroutine in module mom_kappa_shear) calculate_projected_state() (fortran subroutine in module mom_kappa_shear) calculate_spec_vol_array() (fortran subroutine in module mom_eos) calculate_spec_vol_array_linear() (fortran subroutine in module mom_eos_linear) calculate_spec_vol_array_teos10() (fortran subroutine in module mom_eos_teos10) calculate_spec_vol_array_unesco() (fortran subroutine in module mom_eos_unesco) calculate_spec_vol_array_wright() (fortran subroutine in module mom_eos_wright) calculate_spec_vol_derivs_array() (fortran subroutine in module mom_eos) calculate_spec_vol_scalar_linear() (fortran subroutine in module mom_eos_linear) calculate_spec_vol_scalar_teos10() (fortran subroutine in module mom_eos_teos10) calculate_spec_vol_scalar_unesco() (fortran subroutine in module mom_eos_unesco) calculate_spec_vol_scalar_wright() (fortran subroutine in module mom_eos_wright) calculate_specvol_derivs_linear() (fortran subroutine in module mom_eos_linear) calculate_specvol_derivs_teos10() (fortran subroutine in module mom_eos_teos10) calculate_specvol_derivs_wright() (fortran subroutine in module mom_eos_wright) calculate_stanley_density_1d() (fortran subroutine in module mom_eos) calculate_stanley_density_array() (fortran subroutine in module mom_eos) calculate_stanley_density_scalar() (fortran subroutine in module mom_eos) calculate_tfreeze_array() (fortran subroutine in module mom_eos) calculate_tfreeze_linear_array() (fortran subroutine in module mom_tfreeze) calculate_tfreeze_linear_scalar() (fortran subroutine in module mom_tfreeze) calculate_tfreeze_millero_array() (fortran subroutine in module mom_tfreeze) calculate_tfreeze_millero_scalar() (fortran subroutine in module mom_tfreeze) calculate_tfreeze_scalar() (fortran subroutine in module mom_eos) calculate_tfreeze_teos10_array() (fortran subroutine in module mom_tfreeze) calculate_tfreeze_teos10_scalar() (fortran subroutine in module mom_tfreeze) calculate_tidal_mixing() (fortran subroutine in module mom_tidal_mixing) calculate_vertical_integrals() (fortran subroutine in module mom_diagnostics) calculatebuoyancyflux1d() (fortran subroutine in module mom_forcing_type) calculatebuoyancyflux2d() (fortran subroutine in module mom_forcing_type) call_obc_register() (fortran subroutine in module mom_boundary_update) call_tracer_column_fns() (fortran subroutine in module mom_tracer_flow_control) call_tracer_flux_init() (fortran subroutine in module mom_tracer_flow_control) call_tracer_register() (fortran subroutine in module mom_tracer_flow_control) call_tracer_set_forcing() (fortran subroutine in module mom_tracer_flow_control) call_tracer_stocks() (fortran subroutine in module mom_tracer_flow_control) call_tracer_surface_state() (fortran subroutine in module mom_tracer_flow_control) calltree_enter() (fortran subroutine in module mom_error_handler) calltree_leave() (fortran subroutine in module mom_error_handler) calltree_showquery() (fortran function in module mom_error_handler) calltree_waypoint() (fortran subroutine in module mom_error_handler) calve_to_mask() (fortran subroutine in module mom_ice_shelf_dynamics) carry_overflow() (fortran subroutine in module mom_coms) cg_action() (fortran subroutine in module mom_ice_shelf_dynamics) cg_action_subgrid_basal() (fortran subroutine in module mom_ice_shelf_dynamics) cg_diagonal_subgrid_basal() (fortran subroutine in module mom_ice_shelf_dynamics) change_thickness_using_melt() (fortran subroutine in module mom_ice_shelf) check_bkgnd_scheme() (fortran subroutine in module mom_bkgnd_mixing) check_column_integral() (fortran function in module mom_debugging) check_column_integrals() (fortran function in module mom_debugging) check_discontinuous_edge_values() (fortran subroutine in module regrid_edge_values) check_grid() (fortran subroutine in module mom_ale) check_grid_column() (fortran subroutine in module mom_regridding) check_grid_def() (fortran subroutine in module mom_regridding) check_mask_val_consistency() (fortran subroutine in module mom_surface_forcing_gfdl) check_reconstructions_1d() (fortran subroutine in module mom_remapping) check_redundant_sb2d() (fortran subroutine in module mom_debugging) check_redundant_sb3d() (fortran subroutine in module mom_debugging) check_redundant_st2d() (fortran subroutine in module mom_debugging) check_redundant_st3d() (fortran subroutine in module mom_debugging) check_redundant_vb2d() (fortran subroutine in module mom_debugging)

check_redundant_vb3d() (fortran subroutine in module mom_debugging) check_redundant_vc2d() (fortran subroutine in module mom_debugging) check_redundant_vc3d() (fortran subroutine in module mom_debugging) check_redundant_vt2d() (fortran subroutine in module mom_debugging) check_redundant_vt3d() (fortran subroutine in module mom_debugging) check_remapping_grid() (fortran subroutine in module mom_regridding) chk_sum_msg1() (fortran subroutine in module mom_checksums) chk_sum_msg2() (fortran subroutine in module mom_checksums) chk_sum_msg3() (fortran subroutine in module mom_checksums) chk_sum_msg5() (fortran subroutine in module mom_checksums) chk_sum_msg_nsew() (fortran subroutine in module mom_checksums) chk_sum_msg_s() (fortran subroutine in module mom_checksums) chk_sum_msg_w() (fortran subroutine in module mom_checksums) chksum0() (fortran subroutine in module mom_checksums) chksum1d() (fortran subroutine in module mom_checksums) chksum2d() (fortran subroutine in module mom_checksums) chksum3d() (fortran subroutine in module mom_checksums) chksum_b_2d() (fortran subroutine in module mom_checksums) chksum_b_3d() (fortran subroutine in module mom_checksums) chksum_error() (fortran subroutine in module mom_checksums) chksum_h_2d() (fortran subroutine in module mom_checksums) chksum_h_3d() (fortran subroutine in module mom_checksums) chksum_pair_b_2d() (fortran subroutine in module mom_checksums) chksum_pair_b_3d() (fortran subroutine in module mom_checksums) chksum_pair_h_2d() (fortran subroutine in module mom_checksums) chksum_pair_h_3d() (fortran subroutine in module mom_checksums) chksum_u_2d() (fortran subroutine in module mom_checksums) chksum_u_3d() (fortran subroutine in module mom_checksums) chksum_uv_2d() (fortran subroutine in module mom_checksums) chksum_uv_3d() (fortran subroutine in module mom_checksums) chksum_v_2d() (fortran subroutine in module mom_checksums) chksum_v_3d() (fortran subroutine in module mom_checksums) chksum_vec_a2d() (fortran subroutine in module mom_debugging) chksum_vec_a3d() (fortran subroutine in module mom_debugging) chksum_vec_b2d() (fortran subroutine in module mom_debugging) chksum_vec_b3d() (fortran subroutine in module mom_debugging) chksum_vec_c2d() (fortran subroutine in module mom_debugging) chksum_vec_c3d() (fortran subroutine in module mom_debugging) circ_conic_ridge() (fortran function in module basin_builder) circ_ridge() (fortran function in module neverworld_initialization) circ_scurve_ridge() (fortran function in module basin_builder) circle_obcs_initialization (module) circle_obcs_initialize_thickness() (fortran subroutine in module circle_obcs_initialization) clearparameterblock() (fortran subroutine in module mom_file_parser) clone_md_to_d2d() (fortran subroutine in module mom_domains) clone_md_to_md() (fortran subroutine in module mom_domains) close_param_file() (fortran subroutine in module mom_file_parser) close_profile_file() (fortran subroutine in module write_ocean_obs_mod) closemultilinecomment() (fortran function in module mom_file_parser) closeparameterblock() (fortran subroutine in module mom_file_parser) cmor_long_std() (fortran function in module mom_io) compare_nsp_row() (fortran function in module mom_neutral_diffusion) complete_group_pass() (fortran subroutine in module mom_domains) compute_ddiff_coeffs() (fortran subroutine in module mom_cvmix_ddiff) compute_global_grid_integrals() (fortran subroutine in module mom_shared_initialization) (fortran subroutine in module mom_state_initialization) cone() (fortran function in module basin_builder) (fortran function in module neverworld_initialization) cont_diag_ptrs (fortran type in module mom_variables) continuity() (fortran subroutine in module mom_continuity) continuity_cs (fortran type in module mom_continuity) continuity_end() (fortran subroutine in module mom_continuity) continuity_init() (fortran subroutine in module mom_continuity) continuity_ppm() (fortran subroutine in module mom_continuity_ppm) continuity_ppm_cs (fortran type in module mom_continuity_ppm) continuity_ppm_end() (fortran subroutine in module mom_continuity_ppm) continuity_ppm_init() (fortran subroutine in module mom_continuity_ppm) continuity_ppm_stencil() (fortran function in module mom_continuity_ppm) continuity_stencil() (fortran function in module mom_continuity) controlled_forcing_end() (fortran subroutine in module mom_controlled_forcing) controlled_forcing_init() (fortran subroutine in module mom_controlled_forcing) convective_adjustment() (fortran subroutine in module mom_bulk_mixed_layer) (fortran subroutine in module mom_regridding) convert_date_to_string() (fortran function in module mom_file_parser) convert_iob_to_fluxes() (fortran subroutine in module mom_surface_forcing_gfdl) convert_iob_to_forces() (fortran subroutine in module mom_surface_forcing_gfdl) convert_state_to_ocean_type() (fortran subroutine in module ocean_model_mod) convert_temp_salt_for_teos10() (fortran subroutine in module mom_eos) convert_thickness() (fortran subroutine in module mom_state_initialization) coord_adapt (module) coord_hycom (module) coord_rho (module) coord_sigma (module) coord_slight (module) coord_zlike (module) coordinatemode() (fortran function in module regrid_consts) coordinateunitsi() (fortran function in module regrid_consts) coordinateunitss() (fortran function in module regrid_consts) copy_back_forcing_fields() (fortran subroutine in module mom_forcing_type) copy_common_forcing_fields() (fortran subroutine in module mom_forcing_type) copy_dyngrid_to_mom_grid() (fortran subroutine in module mom_transcribe_grid) copy_finite_thicknesses() (fortran subroutine in module coord_rho) copy_mom_grid_to_dyngrid() (fortran subroutine in module mom_transcribe_grid) coradcalc() (fortran subroutine in module mom_coriolisadv) coriolisadv_cs (fortran type in module mom_coriolisadv) coriolisadv_end() (fortran subroutine in module mom_coriolisadv) coriolisadv_init() (fortran subroutine in module mom_coriolisadv) coriolisstokes() (fortran subroutine in module mom_wave_interface) correct_halo_rotation() (fortran subroutine in module mom_internal_tides) cosbell() (fortran function in module neverworld_initialization) cpu_clock_id() (fortran function in module mom_cpu_clock) create_depth_list() (fortran subroutine in module mom_sum_output) create_dyn_horgrid() (fortran subroutine in module mom_dyn_horgrid) create_file() (fortran subroutine in module mom_io) create_var_group_pass_2d() (fortran subroutine in module mom_domains) create_var_group_pass_3d() (fortran subroutine in module mom_domains) create_vector_group_pass_2d() (fortran subroutine in module mom_domains) create_vector_group_pass_3d() (fortran subroutine in module mom_domains) cstprof() (fortran function in module basin_builder) (fortran function in module neverworld_initialization) ctrl_forcing_cs (fortran type in module mom_controlled_forcing) cut_off_column_top() (fortran subroutine in module mom_state_initialization) cvmix_bkgnd_is_used() (fortran function in module mom_bkgnd_mixing) cvmix_conv_cs (fortran type in module mom_cvmix_conv) cvmix_conv_end() (fortran subroutine in module mom_cvmix_conv) cvmix_conv_init() (fortran function in module mom_cvmix_conv) cvmix_conv_is_used() (fortran function in module mom_cvmix_conv) cvmix_ddiff_cs (fortran type in module mom_cvmix_ddiff) cvmix_ddiff_end() (fortran subroutine in module mom_cvmix_ddiff) cvmix_ddiff_init() (fortran function in module mom_cvmix_ddiff) cvmix_ddiff_is_used() (fortran function in module mom_cvmix_ddiff) cvmix_shear_cs (fortran type in module mom_cvmix_shear) cvmix_shear_end() (fortran subroutine in module mom_cvmix_shear) cvmix_shear_init() (fortran function in module mom_cvmix_shear) cvmix_shear_is_used() (fortran function in module mom_cvmix_shear)

D

dealloc_bt_cont_type() (fortran subroutine in module mom_variables) deallocate_forcing_type() (fortran subroutine in module mom_forcing_type) deallocate_mech_forcing() (fortran subroutine in module mom_forcing_type) deallocate_obc_segment_data() (fortran subroutine in module mom_open_boundary) deallocate_surface_state() (fortran subroutine in module mom_variables) define_axes_group() (fortran subroutine in module mom_diag_mediator) define_axes_group_dsamp() (fortran subroutine in module mom_diag_mediator) define_string() (fortran function in module mom_document) delta_rho_from_derivs() (fortran function in module mom_neutral_diffusion) dense_water_initialization (module) dense_water_initialize_sponges() (fortran subroutine in module dense_water_initialization) dense_water_initialize_topography() (fortran subroutine in module dense_water_initialization) dense_water_initialize_ts() (fortran subroutine in module dense_water_initialization) depress_surface() (fortran subroutine in module mom_state_initialization) depth_list (fortran type in module mom_sum_output) depth_list_setup() (fortran subroutine in module mom_sum_output) describe_option() (fortran subroutine in module mom_diag_mediator) destroy_bt_obc() (fortran subroutine in module mom_barotropic) destroy_dyn_horgrid() (fortran subroutine in module mom_dyn_horgrid) determine_dskb() (fortran subroutine in module mom_entrain_diffusive) determine_ea_kb() (fortran subroutine in module mom_entrain_diffusive) determine_is_new_run() (fortran function in module mom_restart) determine_temperature() (fortran subroutine in module mom_tracer_z_init) dhh85_mid() (fortran subroutine in module mom_wave_interface) diabatic() (fortran subroutine in module mom_diabatic_driver) diabatic_ale() (fortran subroutine in module mom_diabatic_driver) diabatic_ale_legacy() (fortran subroutine in module mom_diabatic_driver) diabatic_aux_cs (fortran type in module mom_diabatic_aux) diabatic_aux_end() (fortran subroutine in module mom_diabatic_aux) diabatic_aux_init() (fortran subroutine in module mom_diabatic_aux) diabatic_cs (fortran type in module mom_diabatic_driver) diabatic_driver_end() (fortran subroutine in module mom_diabatic_driver) diabatic_driver_init() (fortran subroutine in module mom_diabatic_driver) diag_associate_volume_cell_measure() (fortran subroutine in module mom_diag_mediator) diag_copy_diag_to_storage() (fortran subroutine in module mom_diag_mediator) diag_copy_storage_to_diag() (fortran subroutine in module mom_diag_mediator) diag_ctrl (fortran type in module mom_diag_mediator) diag_dsamp (fortran type in module mom_diag_mediator) diag_get_volume_cell_measure_dm_id() (fortran function in module mom_diag_mediator) diag_grid_storage (fortran type in module mom_diag_mediator) diag_grid_storage_end() (fortran subroutine in module mom_diag_mediator) diag_grid_storage_init() (fortran subroutine in module mom_diag_mediator) diag_grids_type (fortran type in module mom_diag_mediator) diag_masks_set() (fortran subroutine in module mom_diag_mediator) diag_mediator_close_registration() (fortran subroutine in module mom_diag_mediator) diag_mediator_end() (fortran subroutine in module mom_diag_mediator) diag_mediator_infrastructure_init() (fortran subroutine in module mom_diag_mediator) diag_mediator_init() (fortran subroutine in module mom_diag_mediator) diag_register_area_ids() (fortran subroutine in module mom_diag_mediator) diag_remap_axes_configured() (fortran function in module mom_diag_remap) diag_remap_calc_hmask() (fortran subroutine in module mom_diag_remap) diag_remap_configure_axes() (fortran subroutine in module mom_diag_remap) diag_remap_ctrl (fortran type in module mom_diag_remap) diag_remap_diag_registration_closed() (fortran subroutine in module mom_diag_remap) diag_remap_do_remap() (fortran subroutine in module mom_diag_remap) diag_remap_end() (fortran subroutine in module mom_diag_remap) diag_remap_get_axes_info() (fortran subroutine in module mom_diag_remap) diag_remap_init() (fortran subroutine in module mom_diag_remap) diag_remap_set_active() (fortran subroutine in module mom_diag_remap) diag_remap_update() (fortran subroutine in module mom_diag_remap) diag_restore_grids() (fortran subroutine in module mom_diag_mediator) diag_save_grids() (fortran subroutine in module mom_diag_mediator) diag_set_state_ptrs() (fortran subroutine in module mom_diag_mediator) diag_type (fortran type in module mom_diag_mediator) diag_update_remap_grids() (fortran subroutine in module mom_diag_mediator) diag_vkernels_unit_tests() (fortran function in module mom_diag_vkernels) diagcs_dsamp (fortran type in module mom_diag_mediator) diagnose_boundary_forcing_tendency() (fortran subroutine in module mom_diabatic_driver) diagnose_diabatic_diff_tendency() (fortran subroutine in module mom_diabatic_driver) diagnose_frazil_tendency() (fortran subroutine in module mom_diabatic_driver) diagnosemaximumdepth() (fortran function in module mom_shared_initialization) diagnosemldbydensitydifference() (fortran subroutine in module mom_diabatic_aux) diagnosemldbyenergy() (fortran subroutine in module mom_diabatic_aux) diagnostics_cs (fortran type in module mom_diagnostics) diapyc_energy_req_calc() (fortran subroutine in module mom_diapyc_energy_req) diapyc_energy_req_cs (fortran type in module mom_diapyc_energy_req) diapyc_energy_req_end() (fortran subroutine in module mom_diapyc_energy_req) diapyc_energy_req_init() (fortran subroutine in module mom_diapyc_energy_req) diapyc_energy_req_test() (fortran subroutine in module mom_diapyc_energy_req) differential_diffuse_t_s() (fortran subroutine in module mom_diabatic_aux) diffusivity_diags (fortran type in module mom_set_diffusivity) directories (fortran type in module mom_get_input) disable_averaging() (fortran subroutine in module mom_diag_mediator) dist_line_fixed_x() (fortran function in module basin_builder) (fortran function in module neverworld_initialization)

dist_line_fixed_y() (fortran function in module basin_builder) (fortran function in module neverworld_initialization) distribute_residual_uh_barotropic() (fortran subroutine in module mom_offline_aux) distribute_residual_uh_upwards() (fortran subroutine in module mom_offline_aux) distribute_residual_vh_barotropic() (fortran subroutine in module mom_offline_aux) distribute_residual_vh_upwards() (fortran subroutine in module mom_offline_aux) dl() (fortran function in module mom_grid_initialize) do_group_pass() (fortran subroutine in module mom_domains) doc_closeblock() (fortran subroutine in module mom_document) doc_end() (fortran subroutine in module mom_document) doc_function() (fortran subroutine in module mom_document) doc_init() (fortran subroutine in module mom_document) doc_module() (fortran subroutine in module mom_document) doc_openblock() (fortran subroutine in module mom_document) doc_param_char() (fortran subroutine in module mom_document) doc_param_int() (fortran subroutine in module mom_document) doc_param_int_array() (fortran subroutine in module mom_document) doc_param_logical() (fortran subroutine in module mom_document) doc_param_logical_array() (fortran subroutine in module mom_document) doc_param_none() (fortran subroutine in module mom_document) doc_param_real() (fortran subroutine in module mom_document) doc_param_real_array() (fortran subroutine in module mom_document) doc_param_time() (fortran subroutine in module mom_document) doc_subroutine() (fortran subroutine in module mom_document) doc_type (fortran type in module mom_document) dome2d_initialization (module) dome2d_initialize_sponges() (fortran subroutine in module dome2d_initialization) dome2d_initialize_temperature_salinity() (fortran subroutine in module dome2d_initialization) dome2d_initialize_thickness() (fortran subroutine in module dome2d_initialization) dome2d_initialize_topography() (fortran subroutine in module dome2d_initialization) dome_initialization (module) dome_initialize_sponges() (fortran subroutine in module dome_initialization) dome_initialize_thickness() (fortran subroutine in module dome_initialization) dome_initialize_topography() (fortran subroutine in module dome_initialization) dome_set_obc_data() (fortran subroutine in module dome_initialization) dome_tracer (module) dome_tracer_column_physics() (fortran subroutine in module dome_tracer) dome_tracer_cs (fortran type in module dome_tracer) dome_tracer_end() (fortran subroutine in module dome_tracer) dome_tracer_surface_state() (fortran subroutine in module dome_tracer) double_diffusion() (fortran subroutine in module mom_set_diffusivity) downsample_diag_field_2d() (fortran subroutine in module mom_diag_mediator) downsample_diag_field_3d() (fortran subroutine in module mom_diag_mediator) downsample_diag_indices_get() (fortran subroutine in module mom_diag_mediator) downsample_diag_masks_set() (fortran subroutine in module mom_diag_mediator) downsample_field_2d() (fortran subroutine in module mom_diag_mediator) downsample_field_3d() (fortran subroutine in module mom_diag_mediator) downsample_mask_2d() (fortran subroutine in module mom_diag_mediator) downsample_mask_3d() (fortran subroutine in module mom_diag_mediator) ds_di() (fortran function in module mom_grid_initialize) ds_dj() (fortran function in module mom_grid_initialize) dtdy() (fortran function in module rossby_front_2d_initialization) dumbbell_buoyancy_forcing() (fortran subroutine in module dumbbell_surface_forcing) dumbbell_dynamic_forcing() (fortran subroutine in module dumbbell_surface_forcing) dumbbell_initialization (module) dumbbell_initialize_sponges() (fortran subroutine in module dumbbell_initialization) dumbbell_initialize_temperature_salinity() (fortran subroutine in module dumbbell_initialization) dumbbell_initialize_thickness() (fortran subroutine in module dumbbell_initialization) dumbbell_initialize_topography() (fortran subroutine in module dumbbell_initialization) dumbbell_surface_forcing (module) dumbbell_surface_forcing_cs (fortran type in module dumbbell_surface_forcing) dumbbell_surface_forcing_init() (fortran subroutine in module dumbbell_surface_forcing) dumpgrid() (fortran subroutine in module mom_remapping) dx_di() (fortran function in module mom_grid_initialize) dy_dj() (fortran function in module mom_grid_initialize) dye_stock() (fortran function in module regional_dyes) dye_tracer_column_physics() (fortran subroutine in module regional_dyes) dye_tracer_cs (fortran type in module regional_dyes) dye_tracer_surface_state() (fortran subroutine in module regional_dyes) dyed_channel_initialization (module) dyed_channel_obc_cs (fortran type in module dyed_channel_initialization) dyed_channel_obc_end() (fortran subroutine in module dyed_channel_initialization) dyed_channel_set_obc_tracer_data() (fortran subroutine in module dyed_channel_initialization) dyed_channel_update_flow() (fortran subroutine in module dyed_channel_initialization) dyed_obc_tracer (module) dyed_obc_tracer_column_physics() (fortran subroutine in module dyed_obc_tracer) dyed_obc_tracer_cs (fortran type in module dyed_obc_tracer) dyed_obc_tracer_end() (fortran subroutine in module dyed_obc_tracer) dyed_obcs_initialization (module) dyed_obcs_set_obc_data() (fortran subroutine in module dyed_obcs_initialization) dyn_horgrid_type (fortran type in module mom_dyn_horgrid) dz_function1() (fortran subroutine in module mom_regridding) dzfromh1h2() (fortran subroutine in module mom_remapping)

E

edge_slopes_implicit_h3() (fortran subroutine in module regrid_edge_values) edge_slopes_implicit_h5() (fortran subroutine in module regrid_edge_values) edge_values_explicit_h2() (fortran subroutine in module regrid_edge_values) edge_values_explicit_h4() (fortran subroutine in module regrid_edge_values) edge_values_implicit_h4() (fortran subroutine in module regrid_edge_values) edge_values_implicit_h6() (fortran subroutine in module regrid_edge_values) ef4() (fortran function in module mom_bulk_mixed_layer) efp_assign() (fortran subroutine in module mom_coms) efp_list_sum_across_pes() (fortran subroutine in module mom_coms) efp_minus() (fortran function in module mom_coms) efp_plus() (fortran function in module mom_coms) efp_real_diff() (fortran function in module mom_coms) efp_to_real() (fortran function in module mom_coms) efp_type (fortran type in module mom_coms) efp_val_sum_across_pes() (fortran subroutine in module mom_coms) enable_averages() (fortran subroutine in module mom_diag_mediator) enable_averaging() (fortran subroutine in module mom_diag_mediator) end_coord_adapt() (fortran subroutine in module coord_adapt) end_coord_hycom() (fortran subroutine in module coord_hycom) end_coord_rho() (fortran subroutine in module coord_rho) end_coord_sigma() (fortran subroutine in module coord_sigma) end_coord_slight() (fortran subroutine in module coord_slight) end_coord_zlike() (fortran subroutine in module coord_zlike) end_dyn_split_rk2() (fortran subroutine in module mom_dynamics_split_rk2) end_dyn_unsplit() (fortran subroutine in module mom_dynamics_unsplit) end_dyn_unsplit_rk2() (fortran subroutine in module mom_dynamics_unsplit_rk2) end_mom_generic_tracer() (fortran subroutine in module mom_generic_tracer) end_regridding() (fortran subroutine in module mom_regridding) end_remapping() (fortran subroutine in module mom_remapping) end_value_h4() (fortran subroutine in module regrid_edge_values) energetic_pbl() (fortran subroutine in module mom_energetic_pbl) energetic_pbl_cs (fortran type in module mom_energetic_pbl) energetic_pbl_end() (fortran subroutine in module mom_energetic_pbl) energetic_pbl_get_mld() (fortran subroutine in module mom_energetic_pbl) energetic_pbl_init() (fortran subroutine in module mom_energetic_pbl) ensembler() (fortran function in module mom_io)

entrain_diffusive_cs (fortran type in module mom_entrain_diffusive) entrain_diffusive_end() (fortran subroutine in module mom_entrain_diffusive) entrain_diffusive_init() (fortran subroutine in module mom_entrain_diffusive) entrainment_diffusive() (fortran subroutine in module mom_entrain_diffusive) eos_allocate() (fortran subroutine in module mom_eos) eos_domain() (fortran function in module mom_eos) eos_end() (fortran subroutine in module mom_eos) eos_init() (fortran subroutine in module mom_eos) eos_manual_init() (fortran subroutine in module mom_eos) eos_quadrature() (fortran function in module mom_eos) eos_type (fortran type in module mom_eos) eos_use_linear() (fortran subroutine in module mom_eos) epbl_column() (fortran subroutine in module mom_energetic_pbl) epbl_column_diags (fortran type in module mom_energetic_pbl) eq_phase() (fortran function in module mom_tidal_forcing) evaluation_polynomial() (fortran function in module polynomial_functions) ew_coast() (fortran function in module basin_builder) (fortran function in module neverworld_initialization) external_gwave_initialization (module) external_gwave_initialize_thickness() (fortran subroutine in module external_gwave_initialization) extract_coupler_values() (fortran subroutine in module fms_coupler_util) extract_diabatic_member() (fortran subroutine in module mom_diabatic_driver) extract_integer() (fortran function in module mom_string_functions) extract_iob_stresses() (fortran subroutine in module mom_surface_forcing_gfdl) extract_member_eos() (fortran subroutine in module mom_eos) extract_member_remapping_cs() (fortran subroutine in module mom_remapping) extract_offline_main() (fortran subroutine in module mom_offline_main) extract_optics_fields() (fortran subroutine in module mom_opacity) extract_optics_slice() (fortran subroutine in module mom_opacity) extract_real() (fortran function in module mom_string_functions) extract_surface_state() (fortran subroutine in module mom) extract_word() (fortran function in module mom_string_functions) extractfluxes1d() (fortran subroutine in module mom_forcing_type) extractfluxes2d() (fortran subroutine in module mom_forcing_type) extractword() (fortran function in module mom_string_functions) extrapolate_metric() (fortran subroutine in module mom_grid_initialize)

F

f_kb_to_ea_kb() (fortran subroutine in module mom_entrain_diffusive) f_to_ent() (fortran subroutine in module mom_entrain_diffusive) field_restart (fortran type in module mom_restart) file_data_type (fortran type in module mom_file_parser) file_obc_cs (fortran type in module mom_open_boundary) file_obc_end() (fortran subroutine in module mom_open_boundary) fill_boundaries_int() (fortran function in module mom_horizontal_regridding) fill_boundaries_real() (fortran function in module mom_horizontal_regridding) fill_miss_2d() (fortran subroutine in module mom_horizontal_regridding) fill_temp_salt_segments() (fortran subroutine in module mom_open_boundary) fill_vector_symmetric_edges_2d() (fortran subroutine in module mom_domains) filtered_grid_motion() (fortran subroutine in module mom_regridding) find_coupling_coef() (fortran subroutine in module mom_vert_friction) find_deficit_ratios() (fortran subroutine in module mom_regularize_layers) find_depth_of_pressure_in_cell() (fortran subroutine in module mom_density_integrals) find_duhbt_du() (fortran function in module mom_barotropic) find_dvhbt_dv() (fortran function in module mom_barotropic) find_eta_2d() (fortran subroutine in module mom_interface_heights) find_eta_3d() (fortran subroutine in module mom_interface_heights) find_face_areas() (fortran subroutine in module mom_barotropic) find_in_files() (fortran subroutine in module mom_tidal_forcing) find_interfaces() (fortran subroutine in module mom_state_initialization) find_kappa_tke() (fortran subroutine in module mom_kappa_shear) find_limited_slope() (fortran function in module mom_tracer_z_init) find_maxf_kb() (fortran subroutine in module mom_entrain_diffusive) find_mstar() (fortran subroutine in module mom_energetic_pbl) find_n2() (fortran subroutine in module mom_set_diffusivity) find_n2_bottom() (fortran subroutine in module mom_int_tide_input) find_neutral_pos_full() (fortran function in module mom_neutral_diffusion) find_neutral_pos_linear() (fortran function in module mom_neutral_diffusion) find_neutral_surface_positions_continuous() (fortran subroutine in module mom_neutral_diffusion) find_neutral_surface_positions_discontinuous() (fortran subroutine in module mom_neutral_diffusion) find_obsolete_params() (fortran subroutine in module mom_obsolete_params) find_overlap() (fortran subroutine in module mom_tracer_z_init) find_pe_chg() (fortran subroutine in module mom_diapyc_energy_req) (fortran subroutine in module mom_energetic_pbl)

find_pe_chg_orig() (fortran subroutine in module mom_diapyc_energy_req) (fortran subroutine in module mom_energetic_pbl) find_root() (fortran function in module mom_grid_initialize) find_starting_tke() (fortran subroutine in module mom_bulk_mixed_layer) find_tke_to_kd() (fortran subroutine in module mom_set_diffusivity) find_uhbt() (fortran function in module mom_barotropic) find_unused_unit_number() (fortran function in module mom_document) find_uv_at_h() (fortran subroutine in module mom_diabatic_aux) find_vhbt() (fortran function in module mom_barotropic) find_weights() (fortran subroutine in module mom_diagnostics) finish_mom_initialization() (fortran subroutine in module mom) first_derivative_polynomial() (fortran function in module polynomial_functions) fix_restart_scaling() (fortran subroutine in module mom_verticalgrid) fix_restart_unit_scaling() (fortran subroutine in module mom_unit_scaling) flag_line_as_read() (fortran subroutine in module mom_file_parser) flood_fill() (fortran subroutine in module mom_open_boundary) flood_fill2() (fortran subroutine in module mom_open_boundary) flux_init_ocmip2_cfc() (fortran subroutine in module mom_ocmip2_cfc) fluxes_accumulate() (fortran subroutine in module mom_forcing_type) fluxes_bulk_method() (fortran subroutine in module mom_lateral_boundary_diffusion) fluxes_layer_method() (fortran subroutine in module mom_lateral_boundary_diffusion) fms_coupler_util (module) fms_file_exists() (fortran function in module mom_io) forcing (fortran type in module mom_forcing_type) forcing_accumulate() (fortran subroutine in module mom_forcing_type) forcing_diagnostics() (fortran subroutine in module mom_forcing_type) forcing_diags (fortran type in module mom_forcing_type) forcing_save_restart() (fortran subroutine in module mom_surface_forcing) (fortran subroutine in module mom_surface_forcing_gfdl) forcing_singlepointprint() (fortran subroutine in module mom_forcing_type) forward_operator_type (fortran type in module ocean_da_types_mod) found_in_diagtable() (fortran function in module mom_obsolete_diagnostics) frac_dp_at_pos() (fortran function in module mom_density_integrals) full_convection() (fortran subroutine in module mom_full_convection) fv_diff() (fortran function in module mom_neutral_diffusion) fvlsq_slope() (fortran function in module mom_neutral_diffusion)

G

g_diag_type (fortran type in module g_tracer_utils) g_tracer_common (fortran type in module g_tracer_utils) g_tracer_flux_init() (fortran subroutine in module g_tracer_utils) g_tracer_get_2d() (fortran subroutine in module g_tracer_utils) g_tracer_get_2d_val() (fortran subroutine in module g_tracer_utils) g_tracer_get_3d() (fortran subroutine in module g_tracer_utils) g_tracer_get_3d_val() (fortran subroutine in module g_tracer_utils) g_tracer_get_4d() (fortran subroutine in module g_tracer_utils) g_tracer_get_4d_val() (fortran subroutine in module g_tracer_utils) g_tracer_get_alias() (fortran subroutine in module g_tracer_utils) g_tracer_get_common() (fortran subroutine in module g_tracer_utils) g_tracer_get_name() (fortran subroutine in module g_tracer_utils) g_tracer_get_next() (fortran subroutine in module g_tracer_utils) g_tracer_get_real() (fortran subroutine in module g_tracer_utils) g_tracer_get_string() (fortran subroutine in module g_tracer_utils) g_tracer_is_prog() (fortran function in module g_tracer_utils) g_tracer_send_diag() (fortran subroutine in module g_tracer_utils) g_tracer_set_2d() (fortran subroutine in module g_tracer_utils) g_tracer_set_3d() (fortran subroutine in module g_tracer_utils) g_tracer_set_4d() (fortran subroutine in module g_tracer_utils) g_tracer_set_common() (fortran subroutine in module g_tracer_utils) g_tracer_set_csdiag() (fortran subroutine in module g_tracer_utils) g_tracer_set_real() (fortran subroutine in module g_tracer_utils) g_tracer_type (fortran type in module g_tracer_utils) g_tracer_utils (module) g_tracer_vertdiff_g() (fortran subroutine in module g_tracer_utils) generic_tracer (module) generic_tracer_coupler_accumulate() (fortran subroutine in module generic_tracer) generic_tracer_coupler_get() (fortran subroutine in module generic_tracer) generic_tracer_coupler_set() (fortran subroutine in module generic_tracer) generic_tracer_endNone() (fortran subroutine in module generic_tracer) generic_tracer_get_diag_list() (fortran subroutine in module generic_tracer) generic_tracer_get_list() (fortran subroutine in module generic_tracer) generic_tracer_init() (fortran subroutine in module generic_tracer) generic_tracer_register_diagNone() (fortran subroutine in module generic_tracer) generic_tracer_registerNone() (fortran subroutine in module generic_tracer) generic_tracer_source() (fortran subroutine in module generic_tracer) generic_tracer_update_from_bottom() (fortran subroutine in module generic_tracer) generic_tracer_vertdiff_g() (fortran subroutine in module generic_tracer) geothermal_cs (fortran type in module mom_geothermal) geothermal_end() (fortran subroutine in module mom_geothermal) geothermal_entraining() (fortran subroutine in module mom_geothermal) geothermal_in_place() (fortran subroutine in module mom_geothermal) geothermal_init() (fortran subroutine in module mom_geothermal) get_ale_sponge_nz_data() (fortran function in module mom_ale_sponge) get_ale_sponge_thicknesses() (fortran subroutine in module mom_ale_sponge) get_checksum_loop_ranges() (fortran subroutine in module mom_restart) get_chl_from_model() (fortran subroutine in module mom_tracer_flow_control) get_depth_list_checksums() (fortran subroutine in module mom_sum_output) get_diag_time_end() (fortran function in module mom_diag_mediator) get_domain_extent() (fortran subroutine in module mom_domains) get_domain_extent_dsamp2() (fortran subroutine in module mom_domains)

get_flux_units() (fortran function in module mom_verticalgrid) get_forcing_groups() (fortran subroutine in module mom_forcing_type) get_global_grid_size() (fortran subroutine in module mom_grid) get_global_shape() (fortran subroutine in module mom_domains) get_langmuir_number() (fortran subroutine in module mom_wave_interface) get_lowmode_loss() (fortran subroutine in module mom_internal_tides) get_mech_forcing_groups() (fortran subroutine in module mom_forcing_type) get_mom_input() (fortran subroutine in module mom_get_input) get_mom_state_elements() (fortran subroutine in module mom) get_net_mass_forcing() (fortran subroutine in module mom_forcing_type) get_new_diag_id() (fortran function in module mom_diag_mediator) get_ocean_grid() (fortran subroutine in module ocean_model_mod) get_ocean_stocks() (fortran subroutine in module mom) get_param_char() (fortran subroutine in module mom_file_parser) get_param_char_array() (fortran subroutine in module mom_file_parser) get_param_int() (fortran subroutine in module mom_file_parser) get_param_int_array() (fortran subroutine in module mom_file_parser) get_param_logical() (fortran subroutine in module mom_file_parser) get_param_real() (fortran subroutine in module mom_file_parser) get_param_real_array() (fortran subroutine in module mom_file_parser) get_param_time() (fortran subroutine in module mom_file_parser) get_polynomial_coordinate() (fortran function in module regrid_interp) get_posterior_tracer() (fortran subroutine in module mom_oda_driver_mod) get_profiles() (fortran subroutine in module ocean_da_core_mod) get_regrid_size() (fortran function in module mom_regridding) get_rho_cs() (fortran function in module mom_regridding) get_sigma_cs() (fortran function in module mom_regridding) get_simple_array_i_ind() (fortran subroutine in module mom_domains) get_simple_array_j_ind() (fortran subroutine in module mom_domains) get_sl_average_band() (fortran subroutine in module mom_wave_interface) get_sl_average_prof() (fortran subroutine in module mom_wave_interface) get_stokessl_lifoxkemper() (fortran subroutine in module mom_wave_interface) get_thickness_units() (fortran function in module mom_verticalgrid) get_tr_flux_units() (fortran function in module mom_verticalgrid) get_variable_line() (fortran subroutine in module mom_file_parser) get_zlike_cs() (fortran function in module mom_regridding) getcoordinateinterfaces() (fortran function in module mom_regridding) getcoordinateresolution() (fortran function in module mom_regridding) getcoordinateshortname() (fortran function in module mom_regridding) getcoordinateunits() (fortran function in module mom_regridding) getstaticthickness() (fortran function in module mom_regridding) global_area_integral() (fortran function in module mom_spatial_means) global_area_mean() (fortran function in module mom_spatial_means) global_i_mean() (fortran subroutine in module mom_spatial_means) global_j_mean() (fortran subroutine in module mom_spatial_means) global_layer_mean() (fortran function in module mom_spatial_means) global_mass_integral() (fortran function in module mom_spatial_means) global_volume_mean() (fortran function in module mom_spatial_means) gps (fortran type in module mom_grid_initialize) gradient_at_q_points() (fortran subroutine in module mom_open_boundary) gradke() (fortran subroutine in module mom_coriolisadv) grid_metrics_chksum() (fortran subroutine in module mom_grid_initialize) grid_type (fortran type in module ocean_da_types_mod)

H

harmonic_mean() (fortran function in module mom_lateral_boundary_diffusion) hit_assign() (fortran subroutine in module mom_hor_index) hml() (fortran function in module rossby_front_2d_initialization) hor_index_init() (fortran subroutine in module mom_hor_index) hor_index_type (fortran type in module mom_hor_index) hor_visc_cs (fortran type in module mom_hor_visc)

hor_visc_end() (fortran subroutine in module mom_hor_visc) hor_visc_init() (fortran subroutine in module mom_hor_visc) horiz_interp_and_extrap_tracer_fms_id() (fortran subroutine in module mom_horizontal_regridding) horiz_interp_and_extrap_tracer_record() (fortran subroutine in module mom_horizontal_regridding) horizontal_viscosity() (fortran subroutine in module mom_hor_visc) horizontally_average_diag_field() (fortran subroutine in module mom_diag_remap) hycom_cs (fortran type in module coord_hycom)

I

i2s() (fortran function in module mom_diag_mediator) ice_ocean_boundary_type (fortran type in module mom_surface_forcing_gfdl) ice_ocn_bnd_type_chksum() (fortran subroutine in module mom_surface_forcing_gfdl) ice_shelf_advect() (fortran subroutine in module mom_ice_shelf_dynamics) ice_shelf_advect_temp_x() (fortran subroutine in module mom_ice_shelf_dynamics) ice_shelf_advect_temp_y() (fortran subroutine in module mom_ice_shelf_dynamics) ice_shelf_advect_thickness_x() (fortran subroutine in module mom_ice_shelf_dynamics) ice_shelf_advect_thickness_y() (fortran subroutine in module mom_ice_shelf_dynamics) ice_shelf_cs (fortran type in module mom_ice_shelf) ice_shelf_dyn_cs (fortran type in module mom_ice_shelf_dynamics) ice_shelf_dyn_end() (fortran subroutine in module mom_ice_shelf_dynamics) ice_shelf_end() (fortran subroutine in module mom_ice_shelf) ice_shelf_min_thickness_calve() (fortran subroutine in module mom_ice_shelf_dynamics) ice_shelf_save_restart() (fortran subroutine in module mom_ice_shelf) ice_shelf_solve_inner() (fortran subroutine in module mom_ice_shelf_dynamics) ice_shelf_solve_outer() (fortran subroutine in module mom_ice_shelf_dynamics) ice_shelf_state (fortran type in module mom_ice_shelf_state) ice_shelf_state_end() (fortran subroutine in module mom_ice_shelf_state) ice_shelf_state_init() (fortran subroutine in module mom_ice_shelf_state) ice_shelf_temp() (fortran subroutine in module mom_ice_shelf_dynamics) ice_time_step_cfl() (fortran function in module mom_ice_shelf_dynamics) iceberg_fluxes() (fortran subroutine in module mom_marine_ice) iceberg_forces() (fortran subroutine in module mom_marine_ice) ideal_age_example (module) ideal_age_example_end() (fortran subroutine in module ideal_age_example) ideal_age_stock() (fortran function in module ideal_age_example) ideal_age_tracer_column_physics() (fortran subroutine in module ideal_age_example) ideal_age_tracer_cs (fortran type in module ideal_age_example) ideal_age_tracer_surface_state() (fortran subroutine in module ideal_age_example) idealized_hurricane (module) idealized_hurricane_cs (fortran type in module idealized_hurricane) idealized_hurricane_wind_forcing() (fortran subroutine in module idealized_hurricane) idealized_hurricane_wind_init() (fortran subroutine in module idealized_hurricane) idealized_hurricane_wind_profile() (fortran subroutine in module idealized_hurricane) increment_interface() (fortran subroutine in module mom_neutral_diffusion) increment_ints() (fortran subroutine in module mom_coms) increment_ints_faster() (fortran subroutine in module mom_coms) inflate_vanished_layers_old() (fortran subroutine in module mom_regridding) init_ale_sponge_diags() (fortran subroutine in module mom_ale_sponge) init_boundary_values() (fortran subroutine in module mom_ice_shelf_dynamics) init_coord_adapt() (fortran subroutine in module coord_adapt) init_coord_hycom() (fortran subroutine in module coord_hycom) init_coord_rho() (fortran subroutine in module coord_rho) init_coord_sigma() (fortran subroutine in module coord_sigma) init_coord_slight() (fortran subroutine in module coord_slight) init_coord_zlike() (fortran subroutine in module coord_zlike) init_ocean_ensemble() (fortran subroutine in module mom_oda_driver_mod) init_oda() (fortran subroutine in module mom_oda_driver_mod) init_sponge_diags() (fortran subroutine in module mom_sponge) init_tracer_cfc() (fortran subroutine in module mom_ocmip2_cfc) initcoord() (fortran subroutine in module mom_regridding) initialize_advection_test_tracer() (fortran subroutine in module advection_test_tracer) initialize_ale_sponge_fixed() (fortran subroutine in module mom_ale_sponge) initialize_ale_sponge_varying() (fortran subroutine in module mom_ale_sponge) initialize_boundary_impulse_tracer() (fortran subroutine in module boundary_impulse_tracer) initialize_diag_type() (fortran subroutine in module mom_diag_mediator) initialize_diagnostic_fields() (fortran subroutine in module mom_ice_shelf_dynamics) initialize_dome_tracer() (fortran subroutine in module dome_tracer) initialize_dye_tracer() (fortran subroutine in module regional_dyes) initialize_dyed_obc_tracer() (fortran subroutine in module dyed_obc_tracer) initialize_dyn_split_rk2() (fortran subroutine in module mom_dynamics_split_rk2) initialize_dyn_unsplit() (fortran subroutine in module mom_dynamics_unsplit) initialize_dyn_unsplit_rk2() (fortran subroutine in module mom_dynamics_unsplit_rk2) initialize_grid_rotation_angle() (fortran subroutine in module mom_shared_initialization) initialize_ice_shelf() (fortran subroutine in module mom_ice_shelf) initialize_ice_shelf_dyn() (fortran subroutine in module mom_ice_shelf_dynamics) initialize_ice_thickness() (fortran subroutine in module mom_ice_shelf_initialize) initialize_ice_thickness_channel() (fortran subroutine in module mom_ice_shelf_initialize) initialize_ice_thickness_from_file() (fortran subroutine in module mom_ice_shelf_initialize) initialize_ideal_age_tracer() (fortran subroutine in module ideal_age_example) initialize_isomip_tracer() (fortran subroutine in module isomip_tracer) initialize_masks() (fortran subroutine in module mom_grid_initialize) initialize_mom() (fortran subroutine in module mom) initialize_mom_generic_tracer() (fortran subroutine in module mom_generic_tracer) initialize_obc_tides() (fortran subroutine in module mom_open_boundary) initialize_ocean_public_type() (fortran subroutine in module ocean_model_mod) initialize_ocmip2_cfc() (fortran subroutine in module mom_ocmip2_cfc)

initialize_oil_tracer() (fortran subroutine in module oil_tracer) initialize_pseudo_salt_tracer() (fortran subroutine in module pseudo_salt_tracer) initialize_regridding() (fortran subroutine in module mom_regridding) initialize_remapping() (fortran subroutine in module mom_remapping) initialize_rgc_tracer() (fortran subroutine in module rgc_tracer) initialize_segment_data() (fortran subroutine in module mom_open_boundary) initialize_shelf_mass() (fortran subroutine in module mom_ice_shelf) initialize_sponge() (fortran subroutine in module mom_sponge) initialize_sponges_file() (fortran subroutine in module mom_state_initialization) initialize_temp_salt_fit() (fortran subroutine in module mom_state_initialization) initialize_temp_salt_from_file() (fortran subroutine in module mom_state_initialization) initialize_temp_salt_from_profile() (fortran subroutine in module mom_state_initialization) initialize_temp_salt_linear() (fortran subroutine in module mom_state_initialization) initialize_thickness_from_file() (fortran subroutine in module mom_state_initialization) initialize_thickness_list() (fortran subroutine in module mom_state_initialization) initialize_thickness_searchNone() (fortran subroutine in module mom_state_initialization) initialize_thickness_uniform() (fortran subroutine in module mom_state_initialization) initialize_topography_from_file() (fortran subroutine in module mom_shared_initialization) initialize_topography_named() (fortran subroutine in module mom_shared_initialization) initialize_velocity_circular() (fortran subroutine in module mom_state_initialization) initialize_velocity_from_file() (fortran subroutine in module mom_state_initialization) initialize_velocity_uniform() (fortran subroutine in module mom_state_initialization) initialize_velocity_zero() (fortran subroutine in module mom_state_initialization) insert_offline_main() (fortran subroutine in module mom_offline_main) int_density_dz() (fortran subroutine in module mom_density_integrals) int_density_dz_generic_pcm() (fortran subroutine in module mom_density_integrals) int_density_dz_generic_plm() (fortran subroutine in module mom_density_integrals) int_density_dz_generic_ppm() (fortran subroutine in module mom_density_integrals) int_density_dz_linear() (fortran subroutine in module mom_eos_linear) int_density_dz_wright() (fortran subroutine in module mom_eos_wright) int_di_dx() (fortran function in module mom_grid_initialize) int_dj_dy() (fortran function in module mom_grid_initialize) int_spec_vol_dp_generic_pcm() (fortran subroutine in module mom_density_integrals) int_spec_vol_dp_generic_plm() (fortran subroutine in module mom_density_integrals) int_spec_vol_dp_linear() (fortran subroutine in module mom_eos_linear) int_spec_vol_dp_wright() (fortran subroutine in module mom_eos_wright) int_specific_vol_dp() (fortran subroutine in module mom_density_integrals) int_string() (fortran function in module mom_document) int_tide_cs (fortran type in module mom_internal_tides) int_tide_input_cs (fortran type in module mom_int_tide_input) int_tide_input_end() (fortran subroutine in module mom_int_tide_input) int_tide_input_init() (fortran subroutine in module mom_int_tide_input) int_tide_input_type (fortran type in module mom_int_tide_input) integraterecononinterval() (fortran subroutine in module mom_remapping) integration_polynomial() (fortran function in module polynomial_functions) interface_scalar() (fortran subroutine in module mom_neutral_diffusion) internal_tides_end() (fortran subroutine in module mom_internal_tides) internal_tides_init() (fortran subroutine in module mom_internal_tides) interp_cs_type (fortran type in module regrid_interp) interpolate_column() (fortran subroutine in module mom_diag_vkernels) interpolate_for_nondim_position() (fortran function in module mom_neutral_diffusion) interpolate_grid() (fortran subroutine in module regrid_interp) interpolate_h_to_b() (fortran subroutine in module mom_ice_shelf_dynamics) interpolation_scheme() (fortran function in module regrid_interp) ints_to_real() (fortran function in module mom_coms) invcosh() (fortran function in module mom_intrinsic_functions) is_cubic_monotonic() (fortran function in module p3m_functions) is_nan_0d() (fortran function in module mom_checksums) is_nan_1d() (fortran function in module mom_checksums) is_nan_2d() (fortran function in module mom_checksums) is_nan_3d() (fortran function in module mom_checksums) is_new_run() (fortran function in module mom_restart) is_root_pe() (fortran function in module mom_error_handler) is_unstable() (fortran function in module mom_full_convection) isformattedfloatequalto() (fortran function in module mom_string_functions) isomip_initialization (module) isomip_initialize_sponges() (fortran subroutine in module isomip_initialization) isomip_initialize_temperature_salinity() (fortran subroutine in module isomip_initialization) isomip_initialize_thickness() (fortran subroutine in module isomip_initialization) isomip_initialize_topography() (fortran subroutine in module isomip_initialization) isomip_tracer (module) isomip_tracer_column_physics() (fortran subroutine in module isomip_tracer) isomip_tracer_cs (fortran type in module isomip_tracer) isomip_tracer_end() (fortran subroutine in module isomip_tracer) isomip_tracer_surface_state() (fortran subroutine in module isomip_tracer) ispointincell() (fortran function in module mom_grid) ispossumerrsignificant() (fortran function in module mom_remapping) itidal_lowmode_loss() (fortran subroutine in module mom_internal_tides)

K

kappa_shear_at_vertex() (fortran function in module mom_kappa_shear) kappa_shear_column() (fortran subroutine in module mom_kappa_shear) kappa_shear_cs (fortran type in module mom_kappa_shear) kappa_shear_init() (fortran function in module mom_kappa_shear) kappa_shear_is_used() (fortran function in module mom_kappa_shear) kd_root (fortran type in module kdtree) kdtree (module) kelvin_initialization (module) kelvin_initialize_topography() (fortran subroutine in module kelvin_initialization) kelvin_obc_cs (fortran type in module kelvin_initialization)

kelvin_obc_end() (fortran subroutine in module kelvin_initialization) kelvin_set_obc_data() (fortran subroutine in module kelvin_initialization) kpp_calculate() (fortran subroutine in module mom_cvmix_kpp) kpp_compute_bld() (fortran subroutine in module mom_cvmix_kpp) kpp_cs (fortran type in module mom_cvmix_kpp) kpp_end() (fortran subroutine in module mom_cvmix_kpp) kpp_get_bld() (fortran subroutine in module mom_cvmix_kpp) kpp_init() (fortran function in module mom_cvmix_kpp) kpp_nonlocaltransport_saln() (fortran subroutine in module mom_cvmix_kpp) kpp_nonlocaltransport_temp() (fortran subroutine in module mom_cvmix_kpp) kpp_smooth_bld() (fortran subroutine in module mom_cvmix_kpp)

L

lastnoncommentindex() (fortran function in module mom_file_parser) lastnoncommentnonblank() (fortran function in module mom_file_parser) lateral_boundary_diffusion() (fortran subroutine in module mom_lateral_boundary_diffusion) lateral_boundary_diffusion_cs (fortran type in module mom_lateral_boundary_diffusion) lateral_boundary_diffusion_init() (fortran function in module mom_lateral_boundary_diffusion) layered_diabatic() (fortran subroutine in module mom_diabatic_driver) left_int() (fortran function in module mom_string_functions) left_ints() (fortran function in module mom_string_functions) left_real() (fortran function in module mom_string_functions) left_reals() (fortran function in module mom_string_functions) limit_mass_flux_3d() (fortran subroutine in module mom_offline_aux) limit_topography() (fortran subroutine in module mom_shared_initialization) linear_solver() (fortran subroutine in module regrid_edge_values) (fortran subroutine in module regrid_solvers) link_msg (fortran type in module mom_document) link_parameter (fortran type in module mom_file_parser) local_bt_cont_u_type (fortran type in module mom_barotropic) local_bt_cont_v_type (fortran type in module mom_barotropic) localtesti() (fortran function in module mom_string_functions) localtestr() (fortran function in module mom_string_functions)

localtests() (fortran function in module mom_string_functions) lock_exchange_initialization (module) lock_exchange_initialize_thickness() (fortran subroutine in module lock_exchange_initialization) lock_tracer_registry() (fortran subroutine in module mom_tracer_registry) log_available_diag() (fortran subroutine in module mom_diag_mediator) log_chksum_diag() (fortran subroutine in module mom_diag_mediator) log_param_char() (fortran subroutine in module mom_file_parser) log_param_int() (fortran subroutine in module mom_file_parser) log_param_int_array() (fortran subroutine in module mom_file_parser) log_param_logical() (fortran subroutine in module mom_file_parser) log_param_real() (fortran subroutine in module mom_file_parser) log_param_real_array() (fortran subroutine in module mom_file_parser) log_param_time() (fortran subroutine in module mom_file_parser) log_version_cs() (fortran subroutine in module mom_file_parser) log_version_plain() (fortran subroutine in module mom_file_parser) logical_string() (fortran function in module mom_document) lookup_seg_field() (fortran function in module mom_open_boundary) loop_bounds_type (fortran type in module mom_continuity_ppm) (fortran type in module mom_ice_shelf_dynamics) (fortran type in module mom_internal_tides) lowercase() (fortran function in module mom_string_functions)

M

make_frazil() (fortran subroutine in module mom_diabatic_aux) marine_ice_cs (fortran type in module mom_marine_ice) marine_ice_init() (fortran subroutine in module mom_marine_ice) mark_unstable_cells() (fortran subroutine in module mom_neutral_diffusion) mask_outside_obcs() (fortran subroutine in module mom_open_boundary) matrix_diagonal() (fortran subroutine in module mom_ice_shelf_dynamics) measure_input_bounds() (fortran subroutine in module mom_remapping) measure_output_bounds() (fortran subroutine in module mom_remapping) mech_forcing (fortran type in module mom_forcing_type) mech_forcing_diags() (fortran subroutine in module mom_forcing_type) mech_forcing_singlepointprint() (fortran subroutine in module mom_forcing_type) mechanical_entrainment() (fortran subroutine in module mom_bulk_mixed_layer) meke_alloc_register_restart() (fortran subroutine in module mom_meke) meke_cs (fortran type in module mom_meke) meke_end() (fortran subroutine in module mom_meke) meke_equilibrium() (fortran subroutine in module mom_meke) meke_equilibrium_restoring() (fortran subroutine in module mom_meke) meke_init() (fortran function in module mom_meke) meke_lengthscales() (fortran subroutine in module mom_meke) meke_lengthscales_0d() (fortran subroutine in module mom_meke) meke_type (fortran type in module mom_meke_types) memory_size_type (fortran type in module mom_barotropic) merid_face_thickness() (fortran subroutine in module mom_continuity_ppm) merid_flux_en() (fortran subroutine in module mom_internal_tides) merid_flux_layer() (fortran subroutine in module mom_continuity_ppm) meridional_flux_adjust() (fortran subroutine in module mom_continuity_ppm) meridional_mass_flux() (fortran subroutine in module mom_continuity_ppm) mesghasbeendocumented() (fortran function in module mom_document) meshgrid() (fortran subroutine in module mom_horizontal_regridding) meso_buoyancy_forcing() (fortran subroutine in module meso_surface_forcing) meso_surface_forcing (module) meso_surface_forcing_cs (fortran type in module meso_surface_forcing) meso_surface_forcing_init() (fortran subroutine in module meso_surface_forcing) mixedlayer_convection() (fortran subroutine in module mom_bulk_mixed_layer) mixedlayer_detrain_1() (fortran subroutine in module mom_bulk_mixed_layer) mixedlayer_detrain_2() (fortran subroutine in module mom_bulk_mixed_layer) mixedlayer_restrat() (fortran subroutine in module mom_mixed_layer_restrat) mixedlayer_restrat_bml() (fortran subroutine in module mom_mixed_layer_restrat) mixedlayer_restrat_cs (fortran type in module mom_mixed_layer_restrat) mixedlayer_restrat_general() (fortran subroutine in module mom_mixed_layer_restrat) mixedlayer_restrat_init() (fortran function in module mom_mixed_layer_restrat) mixedlayer_restrat_register_restarts() (fortran subroutine in module mom_mixed_layer_restrat) modify_vardesc() (fortran subroutine in module mom_io) modulo_around_point() (fortran function in module mom_shared_initialization) mom (module) mom_accel_chksum() (fortran subroutine in module mom_checksum_packages) mom_ale (module) mom_ale_sponge (module) mom_array_transform (module) mom_barotropic (module) mom_bkgnd_mixing (module) mom_boundary_update (module) mom_bulk_mixed_layer (module) mom_calculate_grad_coriolis() (fortran subroutine in module mom_shared_initialization) mom_checksum_packages (module) mom_checksums (module) mom_checksums_init() (fortran subroutine in module mom_checksums) mom_coms (module) mom_constants (module) mom_continuity (module) mom_continuity_ppm (module) mom_control_struct (fortran type in module mom) mom_controlled_forcing (module) mom_coord_initialization (module) mom_coriolisadv (module) mom_cpu_clock (module) mom_cvmix_conv (module) mom_cvmix_ddiff (module) mom_cvmix_kpp (module) mom_cvmix_shear (module) mom_debugging (module) mom_debugging_init() (fortran subroutine in module mom_debugging) mom_density_integrals (module) mom_diabatic_aux (module) mom_diabatic_driver (module) mom_diag_ids (fortran type in module mom) mom_diag_manager_wrapper (module) mom_diag_mediator (module) mom_diag_remap (module) mom_diag_vkernels (module) mom_diagnostics (module) mom_diagnostics_end() (fortran subroutine in module mom_diagnostics) mom_diagnostics_init() (fortran subroutine in module mom_diagnostics) mom_diapyc_energy_req (module) mom_document (module) mom_domain_type (fortran type in module mom_domains) mom_domains (module) mom_domains_init() (fortran subroutine in module mom_domains) mom_dyn_horgrid (module) mom_dyn_split_rk2_cs (fortran type in module mom_dynamics_split_rk2) mom_dyn_unsplit_cs (fortran type in module mom_dynamics_unsplit) mom_dyn_unsplit_rk2_cs (fortran type in module mom_dynamics_unsplit_rk2) mom_dynamics_split_rk2 (module) mom_dynamics_unsplit (module) mom_dynamics_unsplit_rk2 (module) mom_end() (fortran subroutine in module mom) MOM_energetic_PBL (module) mom_energetic_pbl (module) mom_entrain_diffusive (module) mom_eos (module) mom_eos_linear (module) mom_eos_nemo (module) mom_eos_teos10 (module) mom_eos_unesco (module) mom_eos_wright (module) mom_error() (fortran subroutine in module mom_error_handler) mom_error_handler (module) mom_file_exists() (fortran function in module mom_io) mom_file_parser (module) mom_fixed_initialization (module) mom_forcing_chksum() (fortran subroutine in module mom_forcing_type) mom_forcing_type (module) mom_full_convection (module) mom_generic_flux_init() (fortran subroutine in module mom_generic_tracer) mom_generic_tracer (module) mom_generic_tracer_column_physics() (fortran subroutine in module mom_generic_tracer) mom_generic_tracer_cs (fortran type in module mom_generic_tracer) mom_generic_tracer_fluxes_accumulate() (fortran subroutine in module mom_generic_tracer) mom_generic_tracer_get() (fortran subroutine in module mom_generic_tracer) mom_generic_tracer_min_max() (fortran function in module mom_generic_tracer) mom_generic_tracer_stock() (fortran function in module mom_generic_tracer) mom_generic_tracer_surface_state() (fortran subroutine in module mom_generic_tracer)

mom_geothermal (module) mom_get_input (module) mom_get_verbosity() (fortran function in module mom_error_handler) mom_grid (module) mom_grid_end() (fortran subroutine in module mom_grid) mom_grid_init() (fortran subroutine in module mom_grid) mom_grid_initialize (module) mom_hor_index (module) mom_hor_visc (module) mom_horizontal_regridding (module) mom_ice_shelf (module) mom_ice_shelf_dynamics (module) mom_ice_shelf_initialize (module) mom_ice_shelf_state (module) mom_infra_endNone() (fortran subroutine in module mom_coms) mom_initialize_coord() (fortran subroutine in module mom_coord_initialization) mom_initialize_fixed() (fortran subroutine in module mom_fixed_initialization) mom_initialize_rotation() (fortran subroutine in module mom_shared_initialization) mom_initialize_state() (fortran subroutine in module mom_state_initialization) mom_initialize_topography() (fortran subroutine in module mom_fixed_initialization) mom_initialize_tracer_from_z() (fortran subroutine in module mom_tracer_initialization_from_z) mom_int_tide_input (module) mom_interface_heights (module) mom_internal_tides (module) mom_intrinsic_functions (module) mom_io (module) mom_io_init() (fortran subroutine in module mom_io) mom_isopycnal_slopes (module) mom_kappa_shear (module) mom_lateral_boundary_diffusion (module) mom_lateral_mixing_coeffs (module) mom_marine_ice (module) mom_mech_forcing_chksum() (fortran subroutine in module mom_forcing_type) mom_meke (module) mom_meke_types (module) mom_mesg() (fortran subroutine in module mom_error_handler) mom_mixed_layer_restrat (module) mom_neutral_diffusion (module) mom_obsolete_diagnostics (module) mom_obsolete_params (module) mom_ocmip2_cfc (module) MOM_oda_driver_mod (module) mom_oda_driver_mod (module) mom_offline_aux (module) mom_offline_main (module) mom_opacity (module) mom_open_boundary (module) mom_pointaccel (module) mom_pressureforce (module) mom_pressureforce_fv (module) mom_pressureforce_mont (module) mom_random (module) mom_read_data_1d() (fortran subroutine in module mom_io) mom_read_data_2d() (fortran subroutine in module mom_io) mom_read_data_3d() (fortran subroutine in module mom_io) mom_read_data_4d() (fortran subroutine in module mom_io) mom_read_vector_2d() (fortran subroutine in module mom_io) mom_read_vector_3d() (fortran subroutine in module mom_io) mom_regridding (module) mom_regularize_layers (module) mom_remapping (module) mom_restart (module) mom_restart_cs (fortran type in module mom_restart) mom_safe_alloc (module) mom_set_diffusivity (module) mom_set_verbosity() (fortran subroutine in module mom_error_handler) mom_set_visc (module) mom_shared_init_init() (fortran subroutine in module mom_shared_initialization) mom_shared_initialization (module) mom_spatial_means (module) mom_sponge (module) mom_state_chksum_3arg() (fortran subroutine in module mom_checksum_packages) mom_state_chksum_5arg() (fortran subroutine in module mom_checksum_packages) mom_state_init_tests() (fortran subroutine in module mom_state_initialization) mom_state_initialization (module) mom_state_is_synchronized() (fortran function in module mom) mom_state_stats() (fortran subroutine in module mom_checksum_packages) mom_string_functions (module) mom_sum_output (module) mom_sum_output_end() (fortran subroutine in module mom_sum_output) mom_sum_output_init() (fortran subroutine in module mom_sum_output) mom_surface_chksum() (fortran subroutine in module mom_checksum_packages) mom_surface_forcing (module) mom_surface_forcing_gfdl (module) mom_temp_salt_initialize_from_z() (fortran subroutine in module mom_state_initialization) mom_tfreeze (module) mom_thermo_chksum() (fortran subroutine in module mom_checksum_packages) mom_thermovar_chksum() (fortran subroutine in module mom_variables) mom_thickness_diffuse (module) mom_tidal_forcing (module) mom_tidal_mixing (module) mom_time_manager (module) mom_timing_init() (fortran subroutine in module mom) mom_tracer_advect (module) mom_tracer_chkinv() (fortran subroutine in module mom_tracer_registry) mom_tracer_chksum() (fortran subroutine in module mom_tracer_registry) mom_tracer_diabatic (module) MOM_tracer_flow_control (module) mom_tracer_flow_control (module) mom_tracer_hor_diff (module) mom_tracer_initialization_from_z (module) mom_tracer_registry (module) mom_tracer_z_init (module) mom_transcribe_grid (module) mom_transform_fms (module) mom_unit_scaling (module) mom_unit_tests (module) mom_variables (module) mom_verbose_enough() (fortran function in module mom_error_handler) mom_vert_friction (module) mom_verticalgrid (module) mom_wave_interface (module) mom_wave_interface_init() (fortran subroutine in module mom_wave_interface) mom_wave_interface_init_lite() (fortran subroutine in module mom_wave_interface) mom_wave_speed (module) mom_wave_structure (module) mom_write_cputime (module) mom_write_cputime_end() (fortran subroutine in module mom_write_cputime) mom_write_cputime_init() (fortran subroutine in module mom_write_cputime) monotonize_cubic() (fortran subroutine in module p3m_functions) mstar_langmuir() (fortran subroutine in module mom_energetic_pbl) myalloc() (fortran subroutine in module mom_forcing_type) mystats() (fortran subroutine in module mom_horizontal_regridding)

N

ndiff_unit_tests_continuous() (fortran function in module mom_neutral_diffusion) ndiff_unit_tests_discontinuous() (fortran function in module mom_neutral_diffusion) near_boundary_unit_tests() (fortran function in module mom_lateral_boundary_diffusion) NETCDF (module) netcdf (module) neutral_diffusion() (fortran subroutine in module mom_neutral_diffusion) neutral_diffusion_calc_coeffs() (fortran subroutine in module mom_neutral_diffusion) neutral_diffusion_cs (fortran type in module mom_neutral_diffusion) neutral_diffusion_end() (fortran subroutine in module mom_neutral_diffusion) neutral_diffusion_init() (fortran function in module mom_neutral_diffusion) neutral_diffusion_unit_tests() (fortran function in module mom_neutral_diffusion) neutral_surface_flux() (fortran subroutine in module mom_neutral_diffusion)

neutral_surface_t_eval() (fortran subroutine in module mom_neutral_diffusion) neverworld_initialization (module) neverworld_initialize_thickness() (fortran subroutine in module neverworld_initialization) neverworld_initialize_topography() (fortran subroutine in module neverworld_initialization) neverworld_wind_forcing() (fortran subroutine in module mom_surface_forcing) next_modulo_time() (fortran function in module mom_offline_aux) nodal_fu() (fortran subroutine in module mom_tidal_forcing) ns_coast() (fortran function in module basin_builder) (fortran function in module neverworld_initialization) ns_conic_ridge() (fortran function in module basin_builder) ns_ridge() (fortran function in module neverworld_initialization) ns_scurve_ridge() (fortran function in module basin_builder) num_timelevels() (fortran function in module mom_io)

O

obc_register_end() (fortran subroutine in module mom_boundary_update) obc_registry_init() (fortran subroutine in module mom_open_boundary) obc_registry_type (fortran type in module mom_open_boundary) obc_segment_data_type (fortran type in module mom_open_boundary) obc_segment_tracer_type (fortran type in module mom_open_boundary) obc_segment_type (fortran type in module mom_open_boundary) obc_struct_type (fortran type in module mom_open_boundary) obsolete_char() (fortran subroutine in module mom_obsolete_params) obsolete_int() (fortran subroutine in module mom_obsolete_params) obsolete_logical() (fortran subroutine in module mom_obsolete_params) obsolete_real() (fortran subroutine in module mom_obsolete_params) obsolete_restart (fortran type in module mom_restart) ocean_control_struct (fortran type in module ocean_da_types_mod) ocean_da_core_init() (fortran subroutine in module ocean_da_core_mod) ocean_da_core_mod (module) ocean_da_types_mod (module) ocean_grid_type (fortran type in module mom_grid) ocean_internal_state (fortran type in module mom_variables) ocean_model_data1d_get() (fortran subroutine in module ocean_model_mod) ocean_model_data2d_get() (fortran subroutine in module ocean_model_mod) ocean_model_end() (fortran subroutine in module ocean_model_mod) ocean_model_flux_init() (fortran subroutine in module ocean_model_mod) ocean_model_get_uv_surf() (fortran subroutine in module ocean_model_mod) ocean_model_init() (fortran subroutine in module ocean_model_mod) ocean_model_init_sfc() (fortran subroutine in module ocean_model_mod) ocean_model_mod (module) ocean_model_restart() (fortran subroutine in module ocean_model_mod) ocean_model_save_restart() (fortran subroutine in module ocean_model_mod) ocean_obc_type (fortran type in module mom_open_boundary) ocean_profile_type (fortran type in module ocean_da_types_mod) ocean_public_type (fortran type in module ocean_model_mod) ocean_public_type_chksum() (fortran subroutine in module ocean_model_mod) ocean_register_diag() (fortran function in module mom_diag_mediator) ocean_state_type (fortran type in module ocean_model_mod) ocean_stock_pe() (fortran subroutine in module ocean_model_mod) ocmip2_cfc_column_physics() (fortran subroutine in module mom_ocmip2_cfc) ocmip2_cfc_cs (fortran type in module mom_ocmip2_cfc) ocmip2_cfc_end() (fortran subroutine in module mom_ocmip2_cfc) ocmip2_cfc_stock() (fortran function in module mom_ocmip2_cfc) ocmip2_cfc_surface_state() (fortran subroutine in module mom_ocmip2_cfc) oda() (fortran subroutine in module mom_oda_driver_mod) oda_cs (fortran type in module mom_oda_driver_mod) oda_end() (fortran subroutine in module mom_oda_driver_mod)

offline_add_diurnal_sw() (fortran subroutine in module mom_offline_aux) offline_advection_ale() (fortran subroutine in module mom_offline_main) offline_advection_layer() (fortran subroutine in module mom_offline_main) offline_diabatic_ale() (fortran subroutine in module mom_offline_main) offline_fw_fluxes_into_ocean() (fortran subroutine in module mom_offline_main) offline_fw_fluxes_out_ocean() (fortran subroutine in module mom_offline_main) offline_redistribute_residual() (fortran subroutine in module mom_offline_main) offline_transport_cs (fortran type in module mom_offline_main) offline_transport_end() (fortran subroutine in module mom_offline_main) offline_transport_init() (fortran subroutine in module mom_offline_main) oil_stock() (fortran function in module oil_tracer) oil_tracer (module) oil_tracer_column_physics() (fortran subroutine in module oil_tracer) oil_tracer_cs (fortran type in module oil_tracer) oil_tracer_end() (fortran subroutine in module oil_tracer) oil_tracer_surface_state() (fortran subroutine in module oil_tracer) old_inflate_layers_1d() (fortran subroutine in module coord_rho) opacity_cs (fortran type in module mom_opacity) opacity_end() (fortran subroutine in module mom_opacity) opacity_from_chl() (fortran subroutine in module mom_opacity) opacity_init() (fortran subroutine in module mom_opacity) opacity_manizza() (fortran function in module mom_opacity) opacity_morel() (fortran function in module mom_opacity) open_boundary_apply_normal_flow() (fortran subroutine in module mom_open_boundary) open_boundary_config() (fortran subroutine in module mom_open_boundary) open_boundary_dealloc() (fortran subroutine in module mom_open_boundary) open_boundary_end() (fortran subroutine in module mom_open_boundary) open_boundary_impose_land_mask() (fortran subroutine in module mom_open_boundary) open_boundary_impose_normal_slope() (fortran subroutine in module mom_open_boundary) open_boundary_init() (fortran subroutine in module mom_open_boundary) open_boundary_query() (fortran function in module mom_open_boundary) open_boundary_register_restarts() (fortran subroutine in module mom_open_boundary) open_boundary_test_extern_h() (fortran subroutine in module mom_open_boundary) open_boundary_test_extern_uv() (fortran subroutine in module mom_open_boundary) open_boundary_zero_normal_flow() (fortran subroutine in module mom_open_boundary) open_doc_file() (fortran subroutine in module mom_document) open_param_file() (fortran subroutine in module mom_file_parser) open_profile_file() (fortran function in module write_ocean_obs_mod) open_restart_units() (fortran function in module mom_restart) openmultilinecomment() (fortran function in module mom_file_parser) openparameterblock() (fortran subroutine in module mom_file_parser) optics_nbands() (fortran function in module mom_opacity) optics_type (fortran type in module mom_opacity) overridewarninghasbeenissued() (fortran function in module mom_file_parser)

P

p0d (fortran type in module mom_restart) p1d (fortran type in module mom_restart) p1m_boundary_extrapolation() (fortran subroutine in module p1m_functions) p1m_functions (module) p1m_interpolation() (fortran subroutine in module p1m_functions) p2d (fortran type in module mom_ale_sponge) (fortran type in module mom_restart) (fortran type in module mom_sponge) (fortran type in module mom_tracer_hor_diff) (fortran type in module mom_variables) p2di (fortran type in module mom_tracer_hor_diff) p3d (fortran type in module mom_ale_sponge) (fortran type in module mom_restart) (fortran type in module mom_sponge) (fortran type in module mom_variables) p3m_boundary_extrapolation() (fortran subroutine in module p3m_functions) p3m_functions (module) p3m_interpolation() (fortran subroutine in module p3m_functions) p3m_limiter() (fortran subroutine in module p3m_functions) p4d (fortran type in module mom_restart) param_file_type (fortran type in module mom_file_parser) parameter_block (fortran type in module mom_file_parser) parse_for_tracer_reservoirs() (fortran subroutine in module mom_open_boundary) parse_segment_data_str() (fortran subroutine in module mom_open_boundary) parse_segment_manifest_str() (fortran subroutine in module mom_open_boundary) parse_segment_param_real() (fortran subroutine in module mom_open_boundary) parse_segment_str() (fortran subroutine in module mom_open_boundary) pass_var_2d() (fortran subroutine in module mom_domains) pass_var_3d() (fortran subroutine in module mom_domains) pass_var_complete_2d() (fortran subroutine in module mom_domains) pass_var_complete_3d() (fortran subroutine in module mom_domains) pass_var_start_2d() (fortran function in module mom_domains) pass_var_start_3d() (fortran function in module mom_domains) pass_vector_2d() (fortran subroutine in module mom_domains) pass_vector_3d() (fortran subroutine in module mom_domains) pass_vector_complete_2d() (fortran subroutine in module mom_domains) pass_vector_complete_3d() (fortran subroutine in module mom_domains) pass_vector_start_2d() (fortran function in module mom_domains) pass_vector_start_3d() (fortran function in module mom_domains) PCM_functions (module) pcm_functions (module) pcm_reconstruction() (fortran subroutine in module pcm_functions) periodic_int() (fortran function in module mom_controlled_forcing) periodic_real() (fortran function in module mom_controlled_forcing) phillips_initialization (module) phillips_initialize_sponges() (fortran subroutine in module phillips_initialization) phillips_initialize_thickness() (fortran subroutine in module phillips_initialization) phillips_initialize_topography() (fortran subroutine in module phillips_initialization) phillips_initialize_velocity() (fortran subroutine in module phillips_initialization) plm_boundary_extrapolation() (fortran subroutine in module plm_functions) plm_diff() (fortran subroutine in module mom_neutral_diffusion) plm_extrapolate_slope() (fortran function in module plm_functions) plm_functions (module) plm_monotonized_slope() (fortran function in module plm_functions) plm_reconstruction() (fortran subroutine in module plm_functions) plm_slope_cw() (fortran function in module plm_functions) plm_slope_wa() (fortran function in module plm_functions) pointaccel_cs (fortran type in module mom_pointaccel) pointaccel_init() (fortran subroutine in module mom_pointaccel) polynomial_functions (module) popblocklevel() (fortran function in module mom_file_parser) populate_param_data() (fortran subroutine in module mom_file_parser) post_data_0d() (fortran subroutine in module mom_diag_mediator)

post_data_1d_k() (fortran subroutine in module mom_diag_mediator) post_data_2d() (fortran subroutine in module mom_diag_mediator) post_data_2d_low() (fortran subroutine in module mom_diag_mediator) post_data_3d() (fortran subroutine in module mom_diag_mediator) post_data_3d_low() (fortran subroutine in module mom_diag_mediator) post_offline_convergence_diags() (fortran subroutine in module mom_offline_main) post_surface_dyn_diags() (fortran subroutine in module mom_diagnostics) post_surface_thermo_diags() (fortran subroutine in module mom_diagnostics) post_tidal_diagnostics() (fortran subroutine in module mom_tidal_mixing) post_tracer_diagnostics_at_sync() (fortran subroutine in module mom_tracer_registry) post_tracer_transport_diagnostics() (fortran subroutine in module mom_tracer_registry) post_transport_diagnostics() (fortran subroutine in module mom_diagnostics) post_xy_average() (fortran subroutine in module mom_diag_mediator) postale_tracer_diagnostics() (fortran subroutine in module mom_tracer_registry) ppm_angular_advect() (fortran subroutine in module mom_internal_tides) ppm_ave() (fortran function in module mom_neutral_diffusion) ppm_boundary_extrapolation() (fortran subroutine in module ppm_functions) ppm_edge() (fortran function in module mom_neutral_diffusion) ppm_functions (module) ppm_left_right_edge_values() (fortran subroutine in module mom_neutral_diffusion) ppm_limit_cw84() (fortran subroutine in module mom_continuity_ppm) ppm_limit_pos() (fortran subroutine in module mom_continuity_ppm) (fortran subroutine in module mom_internal_tides) ppm_limiter_standard() (fortran subroutine in module ppm_functions) ppm_reconstruction() (fortran subroutine in module ppm_functions) ppm_reconstruction_x() (fortran subroutine in module mom_continuity_ppm) (fortran subroutine in module mom_internal_tides) ppm_reconstruction_y() (fortran subroutine in module mom_continuity_ppm) (fortran subroutine in module mom_internal_tides) pqm_boundary_extrapolation() (fortran subroutine in module pqm_functions) pqm_boundary_extrapolation_v1() (fortran subroutine in module pqm_functions) pqm_functions (module) pqm_limiter() (fortran subroutine in module pqm_functions) pqm_reconstruction() (fortran subroutine in module pqm_functions) preale_tracer_diagnostics() (fortran subroutine in module mom_tracer_registry) pressureforce() (fortran subroutine in module mom_pressureforce) pressureforce_cs (fortran type in module mom_pressureforce) pressureforce_end() (fortran subroutine in module mom_pressureforce) pressureforce_fv_bouss() (fortran subroutine in module mom_pressureforce_fv) pressureforce_fv_cs (fortran type in module mom_pressureforce_fv) pressureforce_fv_end() (fortran subroutine in module mom_pressureforce_fv) pressureforce_fv_init() (fortran subroutine in module mom_pressureforce_fv) pressureforce_fv_nonbouss() (fortran subroutine in module mom_pressureforce_fv) pressureforce_init() (fortran subroutine in module mom_pressureforce) pressureforce_mont_bouss() (fortran subroutine in module mom_pressureforce_mont) pressureforce_mont_cs (fortran type in module mom_pressureforce_mont) pressureforce_mont_end() (fortran subroutine in module mom_pressureforce_mont) pressureforce_mont_init() (fortran subroutine in module mom_pressureforce_mont) pressureforce_mont_nonbouss() (fortran subroutine in module mom_pressureforce_mont) prng (fortran type in module mom_random) propagate() (fortran subroutine in module mom_internal_tides) propagate_corner_spread() (fortran subroutine in module mom_internal_tides) propagate_int_tide() (fortran subroutine in module mom_internal_tides) propagate_x() (fortran subroutine in module mom_internal_tides) propagate_y() (fortran subroutine in module mom_internal_tides) pseudo_salt_stock() (fortran function in module pseudo_salt_tracer) pseudo_salt_tracer (module) pseudo_salt_tracer_column_physics() (fortran subroutine in module pseudo_salt_tracer) pseudo_salt_tracer_cs (fortran type in module pseudo_salt_tracer) pseudo_salt_tracer_end() (fortran subroutine in module pseudo_salt_tracer) pseudo_salt_tracer_surface_state() (fortran subroutine in module pseudo_salt_tracer) ptr_mpp_domain (fortran type in module mom_oda_driver_mod) pushblocklevel() (fortran function in module mom_file_parser)

Q

quad_area() (fortran function in module mom_ice_shelf_dynamics) query_averaging_enabled() (fortran function in module mom_diag_mediator) query_compressible() (fortran function in module mom_eos) query_efp_overflow_error() (fortran function in module mom_coms) query_initialized_0d() (fortran function in module mom_restart) query_initialized_0d_name() (fortran function in module mom_restart) query_initialized_1d() (fortran function in module mom_restart) query_initialized_1d_name() (fortran function in module mom_restart)

query_initialized_2d() (fortran function in module mom_restart) query_initialized_2d_name() (fortran function in module mom_restart) query_initialized_3d() (fortran function in module mom_restart) query_initialized_3d_name() (fortran function in module mom_restart) query_initialized_4d() (fortran function in module mom_restart) query_initialized_4d_name() (fortran function in module mom_restart) query_initialized_name() (fortran function in module mom_restart) query_vardesc() (fortran subroutine in module mom_io)

R

radiation_open_bdry_conds() (fortran subroutine in module mom_open_boundary) random_01() (fortran function in module mom_random) random_0d_constructor() (fortran subroutine in module mom_random) random_2d_01() (fortran subroutine in module mom_random) random_2d_constructor() (fortran subroutine in module mom_random) random_2d_norm() (fortran subroutine in module mom_random) random_destruct() (fortran subroutine in module mom_random) random_norm() (fortran function in module mom_random) random_unit_tests() (fortran function in module mom_random) range_ok() (fortran function in module user_change_diffusivity) ratio_max() (fortran function in module mom_continuity_ppm) read_all_input() (fortran subroutine in module mom_offline_main) read_axis_data() (fortran subroutine in module mom_io) read_depth_list() (fortran subroutine in module mom_sum_output) read_face_length_list() (fortran subroutine in module mom_shared_initialization) read_param_char() (fortran subroutine in module mom_file_parser) read_param_char_array() (fortran subroutine in module mom_file_parser) read_param_int() (fortran subroutine in module mom_file_parser) read_param_int_array() (fortran subroutine in module mom_file_parser) read_param_logical() (fortran subroutine in module mom_file_parser) read_param_real() (fortran subroutine in module mom_file_parser) read_param_real_array() (fortran subroutine in module mom_file_parser) read_param_time() (fortran subroutine in module mom_file_parser) read_tidal_constituents() (fortran subroutine in module mom_tidal_mixing) read_tidal_energy() (fortran subroutine in module mom_tidal_mixing) read_z_edges() (fortran subroutine in module mom_tracer_z_init) real_array_string() (fortran function in module mom_document) real_string() (fortran function in module mom_document) real_to_efp() (fortran function in module mom_coms) real_to_ints() (fortran function in module mom_coms) real_to_time() (fortran function in module mom_time_manager) reflect() (fortran subroutine in module mom_internal_tides) refract() (fortran subroutine in module mom_internal_tides) regional_dyes (module) regional_dyes_end() (fortran subroutine in module regional_dyes) register_advection_test_tracer() (fortran function in module advection_test_tracer) register_barotropic_restarts() (fortran subroutine in module mom_barotropic) register_boundary_impulse_tracer() (fortran function in module boundary_impulse_tracer) register_cell_measure() (fortran subroutine in module mom_diag_mediator) register_ctrl_forcing_restarts() (fortran subroutine in module mom_controlled_forcing) register_diag_field() (fortran function in module mom_diag_mediator) register_diag_field_array_fms() (fortran function in module mom_diag_manager_wrapper) register_diag_field_expand_axes() (fortran function in module mom_diag_mediator) register_diag_field_expand_cmor() (fortran function in module mom_diag_mediator) register_diag_field_scalar_fms() (fortran function in module mom_diag_manager_wrapper) register_diags() (fortran subroutine in module mom) register_diags_offline_transport() (fortran subroutine in module mom_offline_main) register_dome_tracer() (fortran function in module dome_tracer) register_dye_tracer() (fortran function in module regional_dyes) register_dyed_channel_obc() (fortran function in module dyed_channel_initialization) register_dyed_obc_tracer() (fortran function in module dyed_obc_tracer) register_file_obc() (fortran function in module mom_open_boundary) register_forcing_type_diags() (fortran subroutine in module mom_forcing_type) register_ice_shelf_dyn_restarts() (fortran subroutine in module mom_ice_shelf_dynamics) register_ideal_age_tracer() (fortran function in module ideal_age_example) register_isomip_tracer() (fortran function in module isomip_tracer) register_kelvin_obc() (fortran function in module kelvin_initialization) register_mom_generic_tracer() (fortran function in module mom_generic_tracer) register_obc() (fortran subroutine in module mom_open_boundary) register_obsolete_diagnostics() (fortran subroutine in module mom_obsolete_diagnostics) register_ocmip2_cfc() (fortran function in module mom_ocmip2_cfc) register_oil_tracer() (fortran function in module oil_tracer) register_pseudo_salt_tracer() (fortran function in module pseudo_salt_tracer) register_restart_field_0d() (fortran subroutine in module mom_restart) register_restart_field_1d() (fortran subroutine in module mom_restart) register_restart_field_2d() (fortran subroutine in module mom_restart) register_restart_field_3d() (fortran subroutine in module mom_restart) register_restart_field_4d() (fortran subroutine in module mom_restart) register_restart_field_as_obsolete() (fortran subroutine in module mom_restart) register_restart_field_ptr0d() (fortran subroutine in module mom_restart) register_restart_field_ptr1d() (fortran subroutine in module mom_restart) register_restart_field_ptr2d() (fortran subroutine in module mom_restart) register_restart_field_ptr3d() (fortran subroutine in module mom_restart) register_restart_field_ptr4d() (fortran subroutine in module mom_restart) register_restart_pair_ptr2d() (fortran subroutine in module mom_restart) register_restart_pair_ptr3d() (fortran subroutine in module mom_restart) register_restart_pair_ptr4d() (fortran subroutine in module mom_restart) register_restarts_dyn_split_rk2() (fortran subroutine in module mom_dynamics_split_rk2) register_restarts_dyn_unsplit() (fortran subroutine in module mom_dynamics_unsplit) register_restarts_dyn_unsplit_rk2() (fortran subroutine in module mom_dynamics_unsplit_rk2) register_rgc_tracer() (fortran function in module rgc_tracer) register_scalar_field() (fortran function in module mom_diag_mediator) register_segment_tracer() (fortran subroutine in module mom_open_boundary) register_shelfwave_obc() (fortran function in module shelfwave_initialization) register_static_field() (fortran function in module mom_diag_mediator) register_surface_diags() (fortran subroutine in module mom_diagnostics) register_temp_salt_segments() (fortran subroutine in module mom_open_boundary) register_tidal_bay_obc() (fortran function in module tidal_bay_initialization) register_time_deriv() (fortran subroutine in module mom_diagnostics) register_tracer() (fortran subroutine in module mom_tracer_registry) register_tracer_diagnostics() (fortran subroutine in module mom_tracer_registry)

register_transport_diags() (fortran subroutine in module mom_diagnostics) regrid_consts (module) regrid_edge_values (module) regrid_interp (module) regrid_solvers (module) regridding_cs (fortran type in module mom_regridding) regridding_main() (fortran subroutine in module mom_regridding) regridding_set_ppolys() (fortran subroutine in module regrid_interp) regularize_ints() (fortran subroutine in module mom_coms) regularize_layers() (fortran subroutine in module mom_regularize_layers) regularize_layers_cs (fortran type in module mom_regularize_layers) regularize_layers_init() (fortran subroutine in module mom_regularize_layers) regularize_surface() (fortran subroutine in module mom_regularize_layers) reintegrate_column() (fortran subroutine in module mom_diag_vkernels) remaining_transport_sum() (fortran function in module mom_offline_main) remap_all_state_vars() (fortran subroutine in module mom_ale) remap_via_sub_cells() (fortran subroutine in module mom_remapping) remapbydeltaz() (fortran subroutine in module mom_remapping) remapbyprojection() (fortran subroutine in module mom_remapping) remapping_core_h() (fortran subroutine in module mom_remapping) remapping_core_w() (fortran subroutine in module mom_remapping) remapping_cs (fortran type in module mom_remapping) remapping_set_param() (fortran subroutine in module mom_remapping) remapping_unit_tests() (fortran function in module mom_remapping) remove_spaces() (fortran function in module mom_string_functions) removecomments() (fortran function in module mom_file_parser) reopen_file() (fortran subroutine in module mom_io) replacetabs() (fortran function in module mom_file_parser) reproducing_efp_sum_2d() (fortran function in module mom_coms) reproducing_sum_2d() (fortran function in module mom_coms) reproducing_sum_3d() (fortran function in module mom_coms) rescale_dyn_horgrid_bathymetry() (fortran subroutine in module mom_dyn_horgrid) rescale_grid_bathymetry() (fortran subroutine in module mom_grid) reset_efp_overflow_error() (fortran subroutine in module mom_coms) reset_face_lengths_file() (fortran subroutine in module mom_shared_initialization) reset_face_lengths_list() (fortran subroutine in module mom_shared_initialization) reset_face_lengths_named() (fortran subroutine in module mom_shared_initialization) resort_ml() (fortran subroutine in module mom_bulk_mixed_layer) restart_end() (fortran subroutine in module mom_restart) restart_error() (fortran subroutine in module mom_restart) restart_files_exist() (fortran function in module mom_restart) restart_init() (fortran subroutine in module mom_restart) restart_init_end() (fortran subroutine in module mom_restart) restore_state() (fortran subroutine in module mom_restart) rgc_initialization (module) rgc_initialize_sponges() (fortran subroutine in module rgc_initialization) rgc_tracer (module) rgc_tracer_column_physics() (fortran subroutine in module rgc_tracer) rgc_tracer_cs (fortran type in module rgc_tracer) rgc_tracer_end() (fortran subroutine in module rgc_tracer) rho_cs (fortran type in module coord_rho) rho_function1() (fortran function in module mom_regridding) rho_interfaces_col() (fortran subroutine in module coord_slight) rossby_front_2d_initialization (module) rossby_front_initialize_temperature_salinity() (fortran subroutine in module rossby_front_2d_initialization) rossby_front_initialize_thickness() (fortran subroutine in module rossby_front_2d_initialization) rossby_front_initialize_velocity() (fortran subroutine in module rossby_front_2d_initialization) rotate_ale_sponge() (fortran subroutine in module mom_ale_sponge) rotate_array_integer() (fortran subroutine in module mom_array_transform) rotate_array_logical() (fortran subroutine in module mom_array_transform) rotate_array_pair_integer() (fortran subroutine in module mom_array_transform) rotate_array_pair_real_2d() (fortran subroutine in module mom_array_transform) rotate_array_pair_real_3d() (fortran subroutine in module mom_array_transform) rotate_array_real_2d() (fortran subroutine in module mom_array_transform) rotate_array_real_3d() (fortran subroutine in module mom_array_transform) rotate_array_real_4d() (fortran subroutine in module mom_array_transform) rotate_dyngrid() (fortran subroutine in module mom_transcribe_grid) rotate_forcing() (fortran subroutine in module mom_forcing_type) rotate_hor_index() (fortran subroutine in module mom_hor_index) rotate_initial_state() (fortran subroutine in module mom) rotate_mech_forcing() (fortran subroutine in module mom_forcing_type) rotate_obc_config() (fortran subroutine in module mom_open_boundary) rotate_obc_init() (fortran subroutine in module mom_open_boundary) rotate_obc_segment_config() (fortran subroutine in module mom_open_boundary) rotate_obc_segment_data() (fortran subroutine in module mom_open_boundary) rotate_surface_state() (fortran subroutine in module mom_variables) rotate_vector_real_2d() (fortran subroutine in module mom_array_transform) rotate_vector_real_3d() (fortran subroutine in module mom_array_transform) rotate_vector_real_4d() (fortran subroutine in module mom_array_transform) rotated_mpp_chksum_real_0d() (fortran function in module mom_transform_fms) rotated_mpp_chksum_real_1d() (fortran function in module mom_transform_fms) rotated_mpp_chksum_real_2d() (fortran function in module mom_transform_fms) rotated_mpp_chksum_real_3d() (fortran function in module mom_transform_fms) rotated_mpp_chksum_real_4d() (fortran function in module mom_transform_fms) rotated_time_interp_external_0d() (fortran subroutine in module mom_transform_fms) rotated_time_interp_external_2d() (fortran subroutine in module mom_transform_fms) rotated_time_interp_external_3d() (fortran subroutine in module mom_transform_fms) rotated_write_field_real_0d() (fortran subroutine in module mom_transform_fms) rotated_write_field_real_1d() (fortran subroutine in module mom_transform_fms) rotated_write_field_real_2d() (fortran subroutine in module mom_transform_fms) rotated_write_field_real_3d() (fortran subroutine in module mom_transform_fms) rotated_write_field_real_4d() (fortran subroutine in module mom_transform_fms)

S

safe_alloc_allocatable_2d() (fortran subroutine in module mom_safe_alloc) safe_alloc_allocatable_3d() (fortran subroutine in module mom_safe_alloc) safe_alloc_allocatable_3d_6arg() (fortran subroutine in module mom_safe_alloc) safe_alloc_ptr_1d() (fortran subroutine in module mom_safe_alloc) safe_alloc_ptr_2d() (fortran subroutine in module mom_safe_alloc) safe_alloc_ptr_2d_2arg() (fortran subroutine in module mom_safe_alloc) safe_alloc_ptr_3d() (fortran subroutine in module mom_safe_alloc) safe_alloc_ptr_3d_3arg() (fortran subroutine in module mom_safe_alloc) safe_alloc_ptr_3d_6arg() (fortran subroutine in module mom_safe_alloc) safe_string_copy() (fortran subroutine in module mom_io) save_obs_diff() (fortran subroutine in module mom_oda_driver_mod) save_restart() (fortran subroutine in module mom_restart) scm_cvmix_tests (module) scm_cvmix_tests_buoyancy_forcing() (fortran subroutine in module scm_cvmix_tests) scm_cvmix_tests_cs (fortran type in module scm_cvmix_tests) scm_cvmix_tests_surface_forcing_init() (fortran subroutine in module scm_cvmix_tests) scm_cvmix_tests_ts_init() (fortran subroutine in module scm_cvmix_tests) scm_cvmix_tests_wind_forcing() (fortran subroutine in module scm_cvmix_tests) scm_idealized_hurricane_wind_forcing() (fortran subroutine in module idealized_hurricane) scurve() (fortran function in module basin_builder) (fortran function in module mom_surface_forcing) (fortran function in module neverworld_initialization) scurve_wind_forcing() (fortran subroutine in module mom_surface_forcing) seamount_initialization (module) seamount_initialize_temperature_salinity() (fortran subroutine in module seamount_initialization) seamount_initialize_thickness() (fortran subroutine in module seamount_initialization) seamount_initialize_topography() (fortran subroutine in module seamount_initialization) search_other_column() (fortran function in module mom_neutral_diffusion) sech() (fortran function in module phillips_initialization) seed_from_index() (fortran function in module mom_random) seed_from_time() (fortran function in module mom_random) segment_tracer_registry_end() (fortran subroutine in module mom_open_boundary) segment_tracer_registry_init() (fortran subroutine in module mom_open_boundary) segment_tracer_registry_type (fortran type in module mom_open_boundary) set_adapt_params() (fortran subroutine in module coord_adapt) set_analysis_time() (fortran subroutine in module mom_oda_driver_mod) set_axes_info() (fortran subroutine in module mom_diag_mediator) set_axes_info_dsamp() (fortran subroutine in module mom_diag_mediator) set_bbl_tke() (fortran subroutine in module mom_set_diffusivity) set_coord_from_file() (fortran subroutine in module mom_coord_initialization) set_coord_from_gprime() (fortran subroutine in module mom_coord_initialization) set_coord_from_layer_density() (fortran subroutine in module mom_coord_initialization) set_coord_from_ts_profile() (fortran subroutine in module mom_coord_initialization) set_coord_from_ts_range() (fortran subroutine in module mom_coord_initialization) set_coord_from_ts_ref() (fortran subroutine in module mom_coord_initialization) set_coord_linear() (fortran subroutine in module mom_coord_initialization) set_coord_to_none() (fortran subroutine in module mom_coord_initialization) set_coupler_values() (fortran subroutine in module fms_coupler_util) set_density_ratios() (fortran subroutine in module mom_set_diffusivity) set_dependent_diagnostics() (fortran subroutine in module mom_diagnostics) set_derived_dyn_horgrid() (fortran subroutine in module mom_dyn_horgrid) set_derived_forcing_fields() (fortran subroutine in module mom_forcing_type) set_derived_metrics() (fortran subroutine in module mom_grid) set_diag_mediator_grid() (fortran subroutine in module mom_diag_mediator) set_diffusivity() (fortran subroutine in module mom_set_diffusivity) set_diffusivity_cs (fortran type in module mom_set_diffusivity) set_diffusivity_end() (fortran subroutine in module mom_set_diffusivity) set_diffusivity_init() (fortran subroutine in module mom_set_diffusivity) set_dtbt() (fortran subroutine in module mom_barotropic) set_ent_bl() (fortran subroutine in module mom_entrain_diffusive) set_first_direction() (fortran subroutine in module mom_grid) set_forcing() (fortran subroutine in module mom_surface_forcing) set_grid_metrics() (fortran subroutine in module mom_grid_initialize) set_grid_metrics_cartesian() (fortran subroutine in module mom_grid_initialize) set_grid_metrics_from_mosaic() (fortran subroutine in module mom_grid_initialize) set_grid_metrics_mercator() (fortran subroutine in module mom_grid_initialize) set_grid_metrics_spherical() (fortran subroutine in module mom_grid_initialize) set_hycom_params() (fortran subroutine in module coord_hycom) set_int_tide_input() (fortran subroutine in module mom_int_tide_input) set_interp_extrap() (fortran subroutine in module regrid_interp) set_interp_scheme() (fortran subroutine in module regrid_interp) set_local_bt_cont_types() (fortran subroutine in module mom_barotropic) set_masks_for_axes() (fortran subroutine in module mom_diag_mediator) set_masks_for_axes_dsamp() (fortran subroutine in module mom_diag_mediator) set_merid_bt_cont() (fortran subroutine in module mom_continuity_ppm) set_net_mass_forcing() (fortran subroutine in module mom_forcing_type) set_opacity() (fortran subroutine in module mom_opacity) set_pbce_bouss() (fortran subroutine in module mom_pressureforce_mont) set_pbce_nonbouss() (fortran subroutine in module mom_pressureforce_mont) set_pen_shortwave() (fortran subroutine in module mom_diabatic_aux) set_prior_tracer() (fortran subroutine in module mom_oda_driver_mod) set_regrid_max_depths() (fortran subroutine in module mom_regridding) set_regrid_max_thickness() (fortran subroutine in module mom_regridding) set_regrid_params() (fortran subroutine in module mom_regridding) set_restart_fields() (fortran subroutine in module mom) set_rho_params() (fortran subroutine in module coord_rho) set_rotation_beta_plane() (fortran subroutine in module mom_shared_initialization) set_rotation_planetary() (fortran subroutine in module mom_shared_initialization) set_sigma_params() (fortran subroutine in module coord_sigma) set_slight_params() (fortran subroutine in module coord_slight) set_target_densities() (fortran subroutine in module mom_regridding) set_target_densities_from_gv() (fortran subroutine in module mom_regridding) set_tracer_data() (fortran subroutine in module mom_open_boundary) set_u_at_v() (fortran function in module mom_set_visc)

set_up_ale_sponge_field_fixed() (fortran subroutine in module mom_ale_sponge) set_up_ale_sponge_field_varying() (fortran subroutine in module mom_ale_sponge) set_up_ale_sponge_vel_field_fixed() (fortran subroutine in module mom_ale_sponge) set_up_ale_sponge_vel_field_varying() (fortran subroutine in module mom_ale_sponge) set_up_bt_obc() (fortran subroutine in module mom_barotropic) set_up_sponge_field() (fortran subroutine in module mom_sponge) set_up_sponge_ml_density() (fortran subroutine in module mom_sponge) set_v_at_u() (fortran function in module mom_set_visc) set_velocity_depth_max() (fortran subroutine in module mom_shared_initialization) (fortran subroutine in module mom_state_initialization) set_velocity_depth_min() (fortran subroutine in module mom_shared_initialization) (fortran subroutine in module mom_state_initialization) set_visc_cs (fortran type in module mom_set_visc) set_visc_end() (fortran subroutine in module mom_set_visc) set_visc_init() (fortran subroutine in module mom_set_visc) set_visc_register_restarts() (fortran subroutine in module mom_set_visc) set_viscous_bbl() (fortran subroutine in module mom_set_visc) set_viscous_ml() (fortran subroutine in module mom_set_visc) set_zlike_params() (fortran subroutine in module coord_zlike) set_zonal_bt_cont() (fortran subroutine in module mom_continuity_ppm) setcoordinateresolution() (fortran subroutine in module mom_regridding) setreconstructiontype() (fortran subroutine in module mom_remapping) setup_obc_tracer_reservoirs() (fortran subroutine in module mom_open_boundary) setup_segment_indices() (fortran subroutine in module mom_open_boundary) setup_tidal_diagnostics() (fortran subroutine in module mom_tidal_mixing) setup_u_point_obc() (fortran subroutine in module mom_open_boundary) setup_v_point_obc() (fortran subroutine in module mom_open_boundary) setverticalgridaxes() (fortran subroutine in module mom_verticalgrid) shelf_advance_front() (fortran subroutine in module mom_ice_shelf_dynamics) shelf_calc_flux() (fortran subroutine in module mom_ice_shelf) shelfwave_initialization (module) shelfwave_initialize_topography() (fortran subroutine in module shelfwave_initialization) shelfwave_obc_cs (fortran type in module shelfwave_initialization) shelfwave_obc_end() (fortran subroutine in module shelfwave_initialization) shelfwave_set_obc_data() (fortran subroutine in module shelfwave_initialization) sigma_cs (fortran type in module coord_sigma) signum() (fortran function in module mom_neutral_diffusion) simplifywhitespace() (fortran function in module mom_file_parser) slasher() (fortran function in module mom_string_functions) slight_cs (fortran type in module coord_slight) slope_limiter() (fortran function in module mom_ice_shelf_dynamics) sloshing_initialization (module) sloshing_initialize_temperature_salinity() (fortran subroutine in module sloshing_initialization) sloshing_initialize_thickness() (fortran subroutine in module sloshing_initialization) sloshing_initialize_topography() (fortran subroutine in module sloshing_initialization) smooth_gme() (fortran subroutine in module mom_hor_visc) smooth_heights() (fortran subroutine in module mom_horizontal_regridding) smoothed_drdt_drds() (fortran subroutine in module mom_full_convection) soliton_initialization (module) soliton_initialize_thickness() (fortran subroutine in module soliton_initialization) soliton_initialize_velocity() (fortran subroutine in module soliton_initialization) solo_step_ice_shelf() (fortran subroutine in module mom_ice_shelf) solve_diag_dominant_tridiag() (fortran subroutine in module regrid_edge_values) (fortran subroutine in module regrid_solvers) solve_linear_system() (fortran subroutine in module regrid_solvers) solve_tridiagonal_system() (fortran subroutine in module regrid_solvers) sort_ml() (fortran subroutine in module mom_bulk_mixed_layer) spike() (fortran function in module neverworld_initialization) sponge_cs (fortran type in module mom_sponge) sponge_end() (fortran subroutine in module mom_sponge) start_group_pass() (fortran subroutine in module mom_domains) state_dependent_char() (fortran function in module regrid_consts) state_dependent_int() (fortran function in module regrid_consts) stats (fortran type in module mom_checksum_packages) step_forward_meke() (fortran subroutine in module mom_meke) step_mom() (fortran subroutine in module mom) step_mom_dyn_split_rk2() (fortran subroutine in module mom_dynamics_split_rk2) step_mom_dyn_unsplit() (fortran subroutine in module mom_dynamics_unsplit) step_mom_dyn_unsplit_rk2() (fortran subroutine in module mom_dynamics_unsplit_rk2) step_mom_dynamics() (fortran subroutine in module mom) step_mom_thermo() (fortran subroutine in module mom) step_mom_tracer_dyn() (fortran subroutine in module mom) step_offline() (fortran subroutine in module mom) stokesmixing() (fortran subroutine in module mom_wave_interface) store_stocks() (fortran subroutine in module mom_tracer_flow_control) streamfn_solver() (fortran subroutine in module mom_thickness_diffuse) string_functions_unit_tests() (fortran function in module mom_string_functions) strip_quotes() (fortran function in module mom_file_parser) sum_en() (fortran subroutine in module mom_internal_tides) sum_output_cs (fortran type in module mom_sum_output) sumswoverbands() (fortran subroutine in module mom_opacity) supercritical_initialization (module) supercritical_set_obc_data() (fortran subroutine in module supercritical_initialization) surface (fortran type in module mom_variables) surface_bands_by_data_override() (fortran subroutine in module mom_wave_interface) surface_diag_ids (fortran type in module mom_diagnostics) surface_forcing_cs (fortran type in module mom_surface_forcing) (fortran type in module mom_surface_forcing_gfdl) surface_forcing_end() (fortran subroutine in module mom_surface_forcing) (fortran subroutine in module mom_surface_forcing_gfdl) surface_forcing_init() (fortran subroutine in module mom_surface_forcing) (fortran subroutine in module mom_surface_forcing_gfdl) sw_pen_frac_morel() (fortran function in module mom_opacity) swap() (fortran subroutine in module mom_barotropic)

T

tdma6() (fortran subroutine in module mom_wave_speed) teleport() (fortran subroutine in module mom_internal_tides) test_answer() (fortran function in module mom_remapping) test_boundary_k_range() (fortran function in module mom_lateral_boundary_diffusion) test_data1d() (fortran function in module mom_neutral_diffusion) test_data1di() (fortran function in module mom_neutral_diffusion) test_fn() (fortran function in module mom_random) test_fv_diff() (fortran function in module mom_neutral_diffusion) test_fvlsq_slope() (fortran function in module mom_neutral_diffusion) test_ifndp() (fortran function in module mom_neutral_diffusion) test_interp() (fortran function in module mom_diag_vkernels) test_layer_fluxes() (fortran function in module mom_lateral_boundary_diffusion) test_line() (fortran subroutine in module regrid_edge_values) test_nsp() (fortran function in module mom_neutral_diffusion) test_reintegrate() (fortran function in module mom_diag_vkernels) test_rnp() (fortran function in module mom_neutral_diffusion) testformattedfloatisreal() (fortran function in module mom_document) thermo_var_ptrs (fortran type in module mom_variables) thickness_diffuse() (fortran subroutine in module mom_thickness_diffuse) thickness_diffuse_cs (fortran type in module mom_thickness_diffuse) thickness_diffuse_end() (fortran subroutine in module mom_thickness_diffuse) thickness_diffuse_full() (fortran subroutine in module mom_thickness_diffuse) thickness_diffuse_get_kh() (fortran subroutine in module mom_thickness_diffuse) thickness_diffuse_init() (fortran subroutine in module mom_thickness_diffuse) tidal_bay_initialization (module) tidal_bay_obc_cs (fortran type in module tidal_bay_initialization) tidal_bay_obc_end() (fortran subroutine in module tidal_bay_initialization) tidal_bay_set_obc_data() (fortran subroutine in module tidal_bay_initialization) tidal_forcing (module) tidal_forcing_cs (fortran type in module mom_tidal_forcing) tidal_forcing_end() (fortran subroutine in module mom_tidal_forcing) tidal_forcing_init() (fortran subroutine in module mom_tidal_forcing) tidal_forcing_sensitivity() (fortran subroutine in module mom_tidal_forcing) tidal_frequency() (fortran function in module mom_tidal_forcing)

tidal_mixing_cs (fortran type in module mom_tidal_mixing) tidal_mixing_diags (fortran type in module mom_tidal_mixing) tidal_mixing_end() (fortran subroutine in module mom_tidal_mixing) tidal_mixing_h_amp() (fortran subroutine in module mom_tidal_mixing) tidal_mixing_init() (fortran function in module mom_tidal_mixing) time_string() (fortran function in module mom_document) totalstuff() (fortran function in module mom_debugging) totaltands() (fortran subroutine in module mom_debugging) tracer_advect_cs (fortran type in module mom_tracer_advect) tracer_advect_end() (fortran subroutine in module mom_tracer_advect) tracer_advect_init() (fortran subroutine in module mom_tracer_advect) tracer_column_physics() (fortran subroutine in module user_tracer_example) tracer_epipycnal_ml_diff() (fortran subroutine in module mom_tracer_hor_diff) tracer_flow_control_cs (fortran type in module mom_tracer_flow_control) tracer_flow_control_end() (fortran subroutine in module mom_tracer_flow_control) tracer_flow_control_init() (fortran subroutine in module mom_tracer_flow_control) tracer_hor_diff_cs (fortran type in module mom_tracer_hor_diff) tracer_hor_diff_end() (fortran subroutine in module mom_tracer_hor_diff) tracer_hor_diff_init() (fortran subroutine in module mom_tracer_hor_diff) tracer_hordiff() (fortran subroutine in module mom_tracer_hor_diff) tracer_name_lookup() (fortran subroutine in module mom_tracer_registry) tracer_registry_end() (fortran subroutine in module mom_tracer_registry) tracer_registry_init() (fortran subroutine in module mom_tracer_registry) tracer_registry_type (fortran type in module mom_tracer_registry) tracer_type (fortran type in module mom_tracer_registry) tracer_vertdiff() (fortran subroutine in module mom_tracer_diabatic) tracer_z_init() (fortran function in module mom_tracer_z_init) tracer_z_init_array() (fortran subroutine in module mom_tracer_z_init) transport_diag_ids (fortran type in module mom_diagnostics) tridiag_det() (fortran subroutine in module mom_wave_speed) tridiag_solver() (fortran subroutine in module mom_wave_structure) tridiagts() (fortran subroutine in module mom_diabatic_aux) trim_for_ice() (fortran subroutine in module mom_state_initialization) ts_plm_edge_values() (fortran subroutine in module mom_ale) ts_ppm_edge_values() (fortran subroutine in module mom_ale)

U

uhbt_to_ubt() (fortran function in module mom_barotropic) undef_string() (fortran function in module mom_document) uniformresolution() (fortran function in module mom_regridding) unit_scale_type (fortran type in module mom_unit_scaling) unit_scaling_end() (fortran subroutine in module mom_unit_scaling) unit_scaling_init() (fortran subroutine in module mom_unit_scaling) unit_tests() (fortran subroutine in module mom_unit_tests) update_ale_sponge_field() (fortran subroutine in module mom_ale_sponge) update_h_horizontal_flux() (fortran subroutine in module mom_offline_aux) update_h_vertical_flux() (fortran subroutine in module mom_offline_aux) update_ice_shelf() (fortran subroutine in module mom_ice_shelf_dynamics) update_obc_cs (fortran type in module mom_boundary_update) update_obc_data() (fortran subroutine in module mom_boundary_update) update_obc_ramp() (fortran subroutine in module mom_open_boundary) update_obc_segment_data() (fortran subroutine in module mom_open_boundary) update_ocean_model() (fortran subroutine in module ocean_model_mod) update_od_ffrac() (fortran subroutine in module mom_ice_shelf_dynamics) update_od_ffrac_uncoupled() (fortran subroutine in module mom_ice_shelf_dynamics) update_offline_fields() (fortran subroutine in module mom_offline_main) update_offline_from_arrays() (fortran subroutine in module mom_offline_aux) update_offline_from_files() (fortran subroutine in module mom_offline_aux) update_segment_tracer_reservoirs() (fortran subroutine in module mom_open_boundary) update_shelf_mass() (fortran subroutine in module mom_ice_shelf) update_stokes_drift() (fortran subroutine in module mom_wave_interface) update_surface_waves() (fortran subroutine in module mom_wave_interface) update_velocity_masks() (fortran subroutine in module mom_ice_shelf_dynamics) updatecfltruncationvalue() (fortran subroutine in module mom_vert_friction) uppercase() (fortran function in module mom_string_functions) user_alter_forcing() (fortran subroutine in module user_revise_forcing) user_buoyancy_forcing() (fortran subroutine in module user_surface_forcing) user_change_diff() (fortran subroutine in module user_change_diffusivity) user_change_diff_cs (fortran type in module user_change_diffusivity)

user_change_diff_end() (fortran subroutine in module user_change_diffusivity) user_change_diff_init() (fortran subroutine in module user_change_diffusivity) user_change_diffusivity (module) user_ice_shelf_cs (fortran type in module user_shelf_init) user_init_ice_thickness() (fortran subroutine in module user_shelf_init) user_init_temperature_salinity() (fortran subroutine in module user_initialization) user_initialization (module) user_initialize_shelf_mass() (fortran subroutine in module user_shelf_init) user_initialize_sponges() (fortran subroutine in module user_initialization) user_initialize_thickness() (fortran subroutine in module user_initialization) user_initialize_topography() (fortran subroutine in module user_initialization) user_initialize_tracer() (fortran subroutine in module user_tracer_example) user_initialize_velocity() (fortran subroutine in module user_initialization) user_register_tracer_example() (fortran function in module user_tracer_example) user_revise_forcing (module) user_revise_forcing_cs (fortran type in module user_revise_forcing) user_revise_forcing_init() (fortran subroutine in module user_revise_forcing) user_set_coord() (fortran subroutine in module user_initialization) user_set_obc_data() (fortran subroutine in module user_initialization) user_set_rotation() (fortran subroutine in module user_initialization) user_shelf_init (module) user_surface_forcing (module) user_surface_forcing_cs (fortran type in module user_surface_forcing) user_surface_forcing_init() (fortran subroutine in module user_surface_forcing) user_tracer_example (module) user_tracer_example_cs (fortran type in module user_tracer_example) user_tracer_example_end() (fortran subroutine in module user_tracer_example) user_tracer_stock() (fortran function in module user_tracer_example) user_tracer_surface_state() (fortran subroutine in module user_tracer_example) user_update_shelf_mass() (fortran subroutine in module user_shelf_init) user_wind_forcing() (fortran subroutine in module user_surface_forcing) ust_2_u10_coare3p5() (fortran subroutine in module mom_wave_interface)

V

val_weights() (fortran function in module user_change_diffusivity) var_desc() (fortran function in module mom_io) vardesc (fortran type in module mom_io) varmix_cs (fortran type in module mom_lateral_mixing_coeffs) varmix_init() (fortran subroutine in module mom_lateral_mixing_coeffs) vert_fill_ts() (fortran subroutine in module mom_isopycnal_slopes) verticalgrid_type (fortran type in module mom_verticalgrid) verticalgridend() (fortran subroutine in module mom_verticalgrid) verticalgridinit() (fortran subroutine in module mom_verticalgrid) vertically_interpolate_diag_field() (fortran subroutine in module mom_diag_remap)

vertically_reintegrate_diag_field() (fortran subroutine in module mom_diag_remap) vertvisc() (fortran subroutine in module mom_vert_friction) vertvisc_coef() (fortran subroutine in module mom_vert_friction) vertvisc_cs (fortran type in module mom_vert_friction) vertvisc_end() (fortran subroutine in module mom_vert_friction) vertvisc_init() (fortran subroutine in module mom_vert_friction) vertvisc_limit_vel() (fortran subroutine in module mom_vert_friction) vertvisc_remnant() (fortran subroutine in module mom_vert_friction) vertvisc_type (fortran type in module mom_variables) vhbt_to_vbt() (fortran function in module mom_barotropic)

W

wave_parameters_cs (fortran type in module mom_wave_interface) wave_speed() (fortran subroutine in module mom_wave_speed) wave_speed_cs (fortran type in module mom_wave_speed) wave_speed_init() (fortran subroutine in module mom_wave_speed) wave_speed_set_param() (fortran subroutine in module mom_wave_speed) wave_speeds() (fortran subroutine in module mom_wave_speed) wave_structure() (fortran subroutine in module mom_wave_structure) wave_structure_cs (fortran type in module mom_wave_structure) wave_structure_init() (fortran subroutine in module mom_wave_structure) waves_end() (fortran subroutine in module mom_wave_interface) wind_forcing_1gyre() (fortran subroutine in module mom_surface_forcing) wind_forcing_2gyre() (fortran subroutine in module mom_surface_forcing) wind_forcing_by_data_override() (fortran subroutine in module mom_surface_forcing) wind_forcing_const() (fortran subroutine in module mom_surface_forcing) wind_forcing_from_file() (fortran subroutine in module mom_surface_forcing) wind_forcing_gyres() (fortran subroutine in module mom_surface_forcing)

write_bfb_log() (fortran subroutine in module bfb_initialization) write_cputime() (fortran subroutine in module mom_write_cputime) write_cputime_cs (fortran type in module mom_write_cputime) write_cputime_start_clock() (fortran subroutine in module mom_write_cputime) write_depth_list() (fortran subroutine in module mom_sum_output) write_energy() (fortran subroutine in module mom_sum_output) write_ocean_geometry_file() (fortran subroutine in module mom_shared_initialization) write_ocean_obs_init() (fortran subroutine in module write_ocean_obs_mod) write_ocean_obs_mod (module) write_profile() (fortran subroutine in module write_ocean_obs_mod) write_static_fields() (fortran subroutine in module mom_diagnostics) write_u_accel() (fortran subroutine in module mom_pointaccel) write_user_log() (fortran subroutine in module user_initialization) (fortran subroutine in module user_shelf_init) write_v_accel() (fortran subroutine in module mom_pointaccel) write_vertgrid_file() (fortran subroutine in module mom_coord_initialization) writemessageanddesc() (fortran subroutine in module mom_document)

Y

ypseudo() (fortran function in module rossby_front_2d_initialization)

Z

zchksum() (fortran subroutine in module mom_checksums) zlike_cs (fortran type in module coord_zlike) zonal_face_thickness() (fortran subroutine in module mom_continuity_ppm)

zonal_flux_adjust() (fortran subroutine in module mom_continuity_ppm) zonal_flux_en() (fortran subroutine in module mom_internal_tides) zonal_flux_layer() (fortran subroutine in module mom_continuity_ppm) zonal_mass_flux() (fortran subroutine in module mom_continuity_ppm)