/home/cermak/venv/esmg/bin/doxygen Doxyfile_rtd_dox Searching for include files... Searching for files in directory /home/cermak/src/MOM6/src/framework Searching for files in directory /home/cermak/src/MOM6/config_src/dynamic_symmetric Searching for example files... Searching for files in directory /home/cermak/src/MOM6/src Searching for files in directory /home/cermak/src/MOM6/src/ALE Searching for files in directory /home/cermak/src/MOM6/src/core Searching for files in directory /home/cermak/src/MOM6/src/diagnostics Searching for files in directory /home/cermak/src/MOM6/src/equation_of_state Searching for files in directory /home/cermak/src/MOM6/src/equation_of_state/TEOS10 Searching for files in directory /home/cermak/src/MOM6/src/framework Searching for files in directory /home/cermak/src/MOM6/src/ice_shelf Searching for files in directory /home/cermak/src/MOM6/src/initialization Searching for files in directory /home/cermak/src/MOM6/src/ocean_data_assim Searching for files in directory /home/cermak/src/MOM6/src/parameterizations Searching for files in directory /home/cermak/src/MOM6/src/parameterizations/lateral Searching for files in directory /home/cermak/src/MOM6/src/parameterizations/vertical Searching for files in directory /home/cermak/src/MOM6/src/tracer Searching for files in directory /home/cermak/src/MOM6/src/user Searching for images... Searching for files in directory /home/cermak/src/MOM6/docs/images Searching for files in directory /home/cermak/src/MOM6/src Searching for files in directory /home/cermak/src/MOM6/src/ALE Searching for files in directory /home/cermak/src/MOM6/src/core Searching for files in directory /home/cermak/src/MOM6/src/diagnostics Searching for files in directory /home/cermak/src/MOM6/src/equation_of_state Searching for files in directory /home/cermak/src/MOM6/src/equation_of_state/TEOS10 Searching for files in directory /home/cermak/src/MOM6/src/framework Searching for files in directory /home/cermak/src/MOM6/src/ice_shelf Searching for files in directory /home/cermak/src/MOM6/src/initialization Searching for files in directory /home/cermak/src/MOM6/src/ocean_data_assim Searching for files in directory /home/cermak/src/MOM6/src/parameterizations Searching for files in directory /home/cermak/src/MOM6/src/parameterizations/lateral Searching for files in directory /home/cermak/src/MOM6/src/parameterizations/vertical Searching for files in directory /home/cermak/src/MOM6/src/tracer Searching for files in directory /home/cermak/src/MOM6/src/user Searching for dot files... Searching for msc files... Searching for dia files... Searching for files to exclude Searching for files in directory /home/cermak/src/MOM6/src/equation_of_state/TEOS10 Searching INPUT for files to process... Searching for files in directory /home/cermak/src/MOM6/src Searching for files in directory /home/cermak/src/MOM6/src/ALE Searching for files in directory /home/cermak/src/MOM6/src/core Searching for files in directory /home/cermak/src/MOM6/src/diagnostics Searching for files in directory /home/cermak/src/MOM6/src/equation_of_state Searching for files in directory /home/cermak/src/MOM6/src/equation_of_state/TEOS10 Searching for files in directory /home/cermak/src/MOM6/src/framework Searching for files in directory /home/cermak/src/MOM6/src/ice_shelf Searching for files in directory /home/cermak/src/MOM6/src/initialization Searching for files in directory /home/cermak/src/MOM6/src/ocean_data_assim Searching for files in directory /home/cermak/src/MOM6/src/parameterizations Searching for files in directory /home/cermak/src/MOM6/src/parameterizations/lateral Searching for files in directory /home/cermak/src/MOM6/src/parameterizations/vertical Searching for files in directory /home/cermak/src/MOM6/src/tracer Searching for files in directory /home/cermak/src/MOM6/src/user Searching for files in directory /home/cermak/src/MOM6/config_src/solo_driver Searching for files in directory /home/cermak/src/MOM6/config_src/dynamic_symmetric Searching for files in directory /home/cermak/src/MOM6/config_src/external Searching for files in directory /home/cermak/src/MOM6/config_src/external/GFDL_ocean_BGC Searching for files in directory /home/cermak/src/MOM6/config_src/external/ODA_hooks Searching for files in directory /home/cermak/src/MOM6/config_src/coupled_driver Reading and parsing tag files Parsing files Preprocessing /home/cermak/src/MOM6/src/ALE/_ALE.dox... Parsing file /home/cermak/src/MOM6/src/ALE/_ALE.dox... Preprocessing /home/cermak/src/MOM6/src/ALE/_ALE_timestep.dox... Parsing file /home/cermak/src/MOM6/src/ALE/_ALE_timestep.dox... Preprocessing /home/cermak/src/MOM6/src/core/_Baroclinic_Momentum.dox... Parsing file /home/cermak/src/MOM6/src/core/_Baroclinic_Momentum.dox... Preprocessing /home/cermak/src/MOM6/src/core/_Barotropic_Baroclinic_Coupling.dox... Parsing file /home/cermak/src/MOM6/src/core/_Barotropic_Baroclinic_Coupling.dox... Preprocessing /home/cermak/src/MOM6/src/core/_Barotropic_Momentum.dox... Parsing file /home/cermak/src/MOM6/src/core/_Barotropic_Momentum.dox... Preprocessing /home/cermak/src/MOM6/src/core/_Discrete_Coriolis.dox... Parsing file /home/cermak/src/MOM6/src/core/_Discrete_Coriolis.dox... Preprocessing /home/cermak/src/MOM6/src/core/_Discrete_grids.dox... Parsing file /home/cermak/src/MOM6/src/core/_Discrete_grids.dox... Preprocessing /home/cermak/src/MOM6/src/core/_Discrete_OBC.dox... Parsing file /home/cermak/src/MOM6/src/core/_Discrete_OBC.dox... Preprocessing /home/cermak/src/MOM6/src/core/_Discrete_PG.dox... Parsing file /home/cermak/src/MOM6/src/core/_Discrete_PG.dox... Preprocessing /home/cermak/src/MOM6/src/core/_Energetic_consistancy.dox... Parsing file /home/cermak/src/MOM6/src/core/_Energetic_consistancy.dox... Preprocessing /home/cermak/src/MOM6/src/core/_Finite_difference.dox... Parsing file /home/cermak/src/MOM6/src/core/_Finite_difference.dox... Preprocessing /home/cermak/src/MOM6/src/core/_General_coordinate.dox... Parsing file /home/cermak/src/MOM6/src/core/_General_coordinate.dox... Preprocessing /home/cermak/src/MOM6/src/core/_Governing.dox... Parsing file /home/cermak/src/MOM6/src/core/_Governing.dox... Preprocessing /home/cermak/src/MOM6/src/core/_Notation.dox... Parsing file /home/cermak/src/MOM6/src/core/_Notation.dox... Preprocessing /home/cermak/src/MOM6/src/core/_PPM.dox... Parsing file /home/cermak/src/MOM6/src/core/_PPM.dox... Preprocessing /home/cermak/src/MOM6/src/core/_Sea_ice.dox... Parsing file /home/cermak/src/MOM6/src/core/_Sea_ice.dox... Preprocessing /home/cermak/src/MOM6/src/core/_Solar_radiation.dox... Parsing file /home/cermak/src/MOM6/src/core/_Solar_radiation.dox... Preprocessing /home/cermak/src/MOM6/src/core/_Specifics.dox... Parsing file /home/cermak/src/MOM6/src/core/_Specifics.dox... Preprocessing /home/cermak/src/MOM6/src/core/_Time_Filter.dox... Parsing file /home/cermak/src/MOM6/src/core/_Time_Filter.dox... Preprocessing /home/cermak/src/MOM6/src/equation_of_state/_Equation_of_State.dox... Parsing file /home/cermak/src/MOM6/src/equation_of_state/_Equation_of_State.dox... Preprocessing /home/cermak/src/MOM6/src/framework/_Diagnostics.dox... Parsing file /home/cermak/src/MOM6/src/framework/_Diagnostics.dox... Preprocessing /home/cermak/src/MOM6/src/framework/_Domain_decomposition.dox... Parsing file /home/cermak/src/MOM6/src/framework/_Domain_decomposition.dox... Preprocessing /home/cermak/src/MOM6/src/framework/_Global_grids.dox... Parsing file /home/cermak/src/MOM6/src/framework/_Global_grids.dox... Preprocessing /home/cermak/src/MOM6/src/framework/_Horizontal_indexing.dox... Parsing file /home/cermak/src/MOM6/src/framework/_Horizontal_indexing.dox... Preprocessing /home/cermak/src/MOM6/src/framework/_Parallel_IO.dox... Parsing file /home/cermak/src/MOM6/src/framework/_Parallel_IO.dox... Preprocessing /home/cermak/src/MOM6/src/framework/_Regional_grids.dox... Parsing file /home/cermak/src/MOM6/src/framework/_Regional_grids.dox... Preprocessing /home/cermak/src/MOM6/src/framework/_Runtime_parameter_system.dox... Parsing file /home/cermak/src/MOM6/src/framework/_Runtime_parameter_system.dox... Preprocessing /home/cermak/src/MOM6/src/framework/_Testing.dox... Parsing file /home/cermak/src/MOM6/src/framework/_Testing.dox... Preprocessing /home/cermak/src/MOM6/src/framework/_Vertical_grids.dox... Parsing file /home/cermak/src/MOM6/src/framework/_Vertical_grids.dox... Preprocessing /home/cermak/src/MOM6/src/parameterizations/vertical/_CVMix_KPP.dox... Parsing file /home/cermak/src/MOM6/src/parameterizations/vertical/_CVMix_KPP.dox... Preprocessing /home/cermak/src/MOM6/src/tracer/_Advection.dox... Parsing file /home/cermak/src/MOM6/src/tracer/_Advection.dox... Preprocessing /home/cermak/src/MOM6/src/tracer/_Discrete_tracer.dox... Parsing file /home/cermak/src/MOM6/src/tracer/_Discrete_tracer.dox... Preprocessing /home/cermak/src/MOM6/src/tracer/_Horizontal_diffusion.dox... Parsing file /home/cermak/src/MOM6/src/tracer/_Horizontal_diffusion.dox... Preprocessing /home/cermak/src/MOM6/src/tracer/_Passive_tracer.dox... Parsing file /home/cermak/src/MOM6/src/tracer/_Passive_tracer.dox... Preprocessing /home/cermak/src/MOM6/src/tracer/_Tracer_fluxes.dox... Parsing file /home/cermak/src/MOM6/src/tracer/_Tracer_fluxes.dox... Preprocessing /home/cermak/src/MOM6/src/tracer/_Tracer_timestep.dox... Parsing file /home/cermak/src/MOM6/src/tracer/_Tracer_timestep.dox... Preprocessing /home/cermak/src/MOM6/src/tracer/_Tracer_Transport.dox... Parsing file /home/cermak/src/MOM6/src/tracer/_Tracer_Transport.dox... Preprocessing /home/cermak/src/MOM6/src/tracer/_Vertical_diffusion.dox... Parsing file /home/cermak/src/MOM6/src/tracer/_Vertical_diffusion.dox... Preprocessing /home/cermak/src/MOM6/src/core/MOM.F90... Parsing file /home/cermak/src/MOM6/src/core/MOM.F90... Preprocessing /home/cermak/src/MOM6/src/ALE/MOM_ALE.F90... Parsing file /home/cermak/src/MOM6/src/ALE/MOM_ALE.F90... Preprocessing /home/cermak/src/MOM6/src/equation_of_state/MOM_EOS.F90... Parsing file /home/cermak/src/MOM6/src/equation_of_state/MOM_EOS.F90... Preprocessing /home/cermak/src/MOM6/src/framework/MOM_unit_scaling.F90... Parsing file /home/cermak/src/MOM6/src/framework/MOM_unit_scaling.F90... Preprocessing /home/cermak/src/MOM6/src/ice_shelf/MOM_ice_shelf.F90... Parsing file /home/cermak/src/MOM6/src/ice_shelf/MOM_ice_shelf.F90... Preprocessing /home/cermak/src/MOM6/src/parameterizations/lateral/MOM_MEKE.F90... Parsing file /home/cermak/src/MOM6/src/parameterizations/lateral/MOM_MEKE.F90... Building group list... Building directory list... Building namespace list... Building file list... Building class list... Associating documentation with classes... Computing nesting relations for classes... Building example list... Searching for enumerations... Searching for documented typedefs... Searching for members imported via using declarations... Searching for included using directives... Searching for documented variables... Building interface member list... Building member list... Searching for friends... Searching for documented defines... Computing class inheritance relations... Computing class usage relations... Flushing cached template relations that have become invalid... Computing class relations... Add enum values to enums... Searching for member function documentation... Creating members for template instances... Building page list... Search for main page... Computing page relations... Determining the scope of groups... Sorting lists... Freeing entry tree Determining which enums are documented Computing member relations... Building full member lists recursively... Adding members to member groups. Distributing member group documentation. Computing member references... Inheriting documentation... Generating disk names... Adding source references... Adding xrefitems... Sorting member lists... Computing dependencies between directories... Generating citations page... Counting data structures... Resolving user defined references... Finding anchors and sections in the documentation... Transferring function references... Combining using relations... Adding members to index pages... Generating style sheet... Generating search indices... Generating example documentation... Generating file sources... Parsing code for file /home/cermak/src/MOM6/src/ALE/_ALE.dox... Parsing code for file /home/cermak/src/MOM6/src/ALE/_ALE_timestep.dox... Generating code for file /home/cermak/src/MOM6/src/ALE/MOM_ALE.F90... Parsing code for file /home/cermak/src/MOM6/src/core/_Baroclinic_Momentum.dox... Parsing code for file /home/cermak/src/MOM6/src/core/_Barotropic_Baroclinic_Coupling.dox... Parsing code for file /home/cermak/src/MOM6/src/core/_Barotropic_Momentum.dox... Parsing code for file /home/cermak/src/MOM6/src/core/_Discrete_Coriolis.dox... Parsing code for file /home/cermak/src/MOM6/src/core/_Discrete_grids.dox... Parsing code for file /home/cermak/src/MOM6/src/core/_Discrete_OBC.dox... Parsing code for file /home/cermak/src/MOM6/src/core/_Discrete_PG.dox... Parsing code for file /home/cermak/src/MOM6/src/core/_Energetic_consistancy.dox... Parsing code for file /home/cermak/src/MOM6/src/core/_Finite_difference.dox... Parsing code for file /home/cermak/src/MOM6/src/core/_General_coordinate.dox... Parsing code for file /home/cermak/src/MOM6/src/core/_Governing.dox... Parsing code for file /home/cermak/src/MOM6/src/core/_Notation.dox... Parsing code for file /home/cermak/src/MOM6/src/core/_PPM.dox... Parsing code for file /home/cermak/src/MOM6/src/core/_Sea_ice.dox... Parsing code for file /home/cermak/src/MOM6/src/core/_Solar_radiation.dox... Parsing code for file /home/cermak/src/MOM6/src/core/_Specifics.dox... Parsing code for file /home/cermak/src/MOM6/src/core/_Time_Filter.dox... Generating code for file /home/cermak/src/MOM6/src/core/MOM.F90... Parsing code for file /home/cermak/src/MOM6/src/equation_of_state/_Equation_of_State.dox... Generating code for file /home/cermak/src/MOM6/src/equation_of_state/MOM_EOS.F90... Parsing code for file /home/cermak/src/MOM6/src/framework/_Diagnostics.dox... Parsing code for file /home/cermak/src/MOM6/src/framework/_Domain_decomposition.dox... Parsing code for file /home/cermak/src/MOM6/src/framework/_Global_grids.dox... Parsing code for file /home/cermak/src/MOM6/src/framework/_Horizontal_indexing.dox... Parsing code for file /home/cermak/src/MOM6/src/framework/_Parallel_IO.dox... Parsing code for file /home/cermak/src/MOM6/src/framework/_Regional_grids.dox... Parsing code for file /home/cermak/src/MOM6/src/framework/_Runtime_parameter_system.dox... Parsing code for file /home/cermak/src/MOM6/src/framework/_Testing.dox... Parsing code for file /home/cermak/src/MOM6/src/framework/_Vertical_grids.dox... Generating code for file /home/cermak/src/MOM6/src/framework/MOM_unit_scaling.F90... Generating code for file /home/cermak/src/MOM6/src/ice_shelf/MOM_ice_shelf.F90... Generating code for file /home/cermak/src/MOM6/src/parameterizations/lateral/MOM_MEKE.F90... Parsing code for file /home/cermak/src/MOM6/src/parameterizations/vertical/_CVMix_KPP.dox... Parsing code for file /home/cermak/src/MOM6/src/tracer/_Advection.dox... Parsing code for file /home/cermak/src/MOM6/src/tracer/_Discrete_tracer.dox... Parsing code for file /home/cermak/src/MOM6/src/tracer/_Horizontal_diffusion.dox... Parsing code for file /home/cermak/src/MOM6/src/tracer/_Passive_tracer.dox... Parsing code for file /home/cermak/src/MOM6/src/tracer/_Tracer_fluxes.dox... Parsing code for file /home/cermak/src/MOM6/src/tracer/_Tracer_timestep.dox... Parsing code for file /home/cermak/src/MOM6/src/tracer/_Tracer_Transport.dox... Parsing code for file /home/cermak/src/MOM6/src/tracer/_Vertical_diffusion.dox... Generating file documentation... Generating docs for file /home/cermak/src/MOM6/src/ALE/_ALE.dox... Generating docs for file /home/cermak/src/MOM6/src/ALE/_ALE_timestep.dox... Generating docs for file /home/cermak/src/MOM6/src/ALE/MOM_ALE.F90... Generating docs for file /home/cermak/src/MOM6/src/core/_Baroclinic_Momentum.dox... Generating docs for file /home/cermak/src/MOM6/src/core/_Barotropic_Baroclinic_Coupling.dox... Generating docs for file /home/cermak/src/MOM6/src/core/_Barotropic_Momentum.dox... Generating docs for file /home/cermak/src/MOM6/src/core/_Discrete_Coriolis.dox... Generating docs for file /home/cermak/src/MOM6/src/core/_Discrete_grids.dox... Generating docs for file /home/cermak/src/MOM6/src/core/_Discrete_OBC.dox... Generating docs for file /home/cermak/src/MOM6/src/core/_Discrete_PG.dox... Generating docs for file /home/cermak/src/MOM6/src/core/_Energetic_consistancy.dox... Generating docs for file /home/cermak/src/MOM6/src/core/_Finite_difference.dox... Generating docs for file /home/cermak/src/MOM6/src/core/_General_coordinate.dox... Generating docs for file /home/cermak/src/MOM6/src/core/_Governing.dox... Generating docs for file /home/cermak/src/MOM6/src/core/_Notation.dox... Generating docs for file /home/cermak/src/MOM6/src/core/_PPM.dox... Generating docs for file /home/cermak/src/MOM6/src/core/_Sea_ice.dox... Generating docs for file /home/cermak/src/MOM6/src/core/_Solar_radiation.dox... Generating docs for file /home/cermak/src/MOM6/src/core/_Specifics.dox... Generating docs for file /home/cermak/src/MOM6/src/core/_Time_Filter.dox... Generating docs for file /home/cermak/src/MOM6/src/core/MOM.F90... Generating docs for file /home/cermak/src/MOM6/src/equation_of_state/_Equation_of_State.dox... Generating docs for file /home/cermak/src/MOM6/src/equation_of_state/MOM_EOS.F90... Generating docs for file /home/cermak/src/MOM6/src/framework/_Diagnostics.dox... Generating docs for file /home/cermak/src/MOM6/src/framework/_Domain_decomposition.dox... Generating docs for file /home/cermak/src/MOM6/src/framework/_Global_grids.dox... Generating docs for file /home/cermak/src/MOM6/src/framework/_Horizontal_indexing.dox... Generating docs for file /home/cermak/src/MOM6/src/framework/_Parallel_IO.dox... Generating docs for file /home/cermak/src/MOM6/src/framework/_Regional_grids.dox... Generating docs for file /home/cermak/src/MOM6/src/framework/_Runtime_parameter_system.dox... Generating docs for file /home/cermak/src/MOM6/src/framework/_Testing.dox... Generating docs for file /home/cermak/src/MOM6/src/framework/_Vertical_grids.dox... Generating docs for file /home/cermak/src/MOM6/src/framework/MOM_unit_scaling.F90... Generating docs for file /home/cermak/src/MOM6/src/ice_shelf/MOM_ice_shelf.F90... Generating docs for file /home/cermak/src/MOM6/src/parameterizations/lateral/MOM_MEKE.F90... Generating docs for file /home/cermak/src/MOM6/src/parameterizations/vertical/_CVMix_KPP.dox... Generating docs for file /home/cermak/src/MOM6/src/tracer/_Advection.dox... Generating docs for file /home/cermak/src/MOM6/src/tracer/_Discrete_tracer.dox... Generating docs for file /home/cermak/src/MOM6/src/tracer/_Horizontal_diffusion.dox... Generating docs for file /home/cermak/src/MOM6/src/tracer/_Passive_tracer.dox... Generating docs for file /home/cermak/src/MOM6/src/tracer/_Tracer_fluxes.dox... Generating docs for file /home/cermak/src/MOM6/src/tracer/_Tracer_timestep.dox... Generating docs for file /home/cermak/src/MOM6/src/tracer/_Tracer_Transport.dox... Generating docs for file /home/cermak/src/MOM6/src/tracer/_Vertical_diffusion.dox... Generating page documentation... Generating docs for page ALE... Generating docs for page ALE_Timestep... Generating docs for page Baroclinic_Momentum_Equations... Generating docs for page Barotropic_Baroclinic_Coupling... Generating docs for page Barotropic_Momentum_Equations... Generating docs for page Discrete_Coriolis... Generating docs for page Discrete_Grids... Generating docs for page Discrete_OBC... Generating docs for page Discrete_PG... Generating docs for page Energetic_Consistency... Generating docs for page Finite_Difference_Operators... Generating docs for page General_Coordinate... Generating docs for page Governing_Equations... Generating docs for page Notation... Generating docs for page PPM... Generating docs for page Sea_Ice... Generating docs for page Solar_Radiation... Generating docs for page Specifics... Generating docs for page Time_Filtering... Generating docs for page Equation_of_State... Generating docs for page Diagnostics... Generating docs for page Domain_Decomposition... Generating docs for page Global_Grids... Generating docs for page Horizontal_Indexing... Generating docs for page Parallel_IO... Generating docs for page Regional_Grids... Generating docs for page Runtime_Parameter_System... Generating docs for page Testing... Generating docs for page Vertical_Grids... Generating docs for page CVMix_KPP... Generating docs for page Tracer_Advection... Generating docs for page Discrete_Tracer... Generating docs for page Horizontal_Diffusion... Generating docs for page Passive_Tracers... Generating docs for page Tracer_Fluxes... Generating docs for page Tracer_Timestep... Generating docs for page Tracer_Transport_Equations... Generating docs for page Vertical_Diffusion... Generating docs for page citelist... Generating group documentation... Generating class documentation... Generating namespace index... Generating docs for namespace mom Generating docs for compound mom::mom_control_struct... Generating docs for compound mom::mom_diag_ids... Generating docs for namespace mom_ale Generating docs for compound mom_ale::ale_cs... Generating docs for namespace mom_eos Generating docs for compound mom_eos::calculate_compress... Generating docs for compound mom_eos::calculate_density... Generating docs for compound mom_eos::calculate_density_derivs... Generating docs for compound mom_eos::calculate_density_second_derivs... Generating docs for compound mom_eos::calculate_spec_vol... Generating docs for compound mom_eos::calculate_specific_vol_derivs... Generating docs for compound mom_eos::calculate_tfreeze... Generating docs for compound mom_eos::eos_type... Generating docs for namespace mom_ice_shelf Generating docs for compound mom_ice_shelf::ice_shelf_cs... Generating docs for namespace mom_meke Generating docs for compound mom_meke::meke_cs... Generating docs for namespace mom_unit_scaling Generating docs for compound mom_unit_scaling::unit_scale_type... Generating graph info page... Generating directory documentation... Generating index page... Generating page index... Generating module index... Generating namespace index... Generating namespace member index... Generating annotated compound index... Generating alphabetical compound index... Generating hierarchical class index... Generating member index... Generating file index... Generating file member index... Generating example index... finalizing index lists... writing tag file... Generating XML output... Generating XML output for class mom_ale::ale_cs Generating XML output for class mom_eos::calculate_compress Generating XML output for class mom_eos::calculate_density Generating XML output for class mom_eos::calculate_density_derivs Generating XML output for class mom_eos::calculate_density_second_derivs Generating XML output for class mom_eos::calculate_spec_vol Generating XML output for class mom_eos::calculate_specific_vol_derivs Generating XML output for class mom_eos::calculate_tfreeze Generating XML output for class mom_eos::eos_type Generating XML output for class mom_ice_shelf::ice_shelf_cs Generating XML output for class mom_meke::meke_cs Generating XML output for class mom::mom_control_struct Generating XML output for class mom::mom_diag_ids Generating XML output for class mom_unit_scaling::unit_scale_type Generating XML output for namespace mom Generating XML output for namespace mom_ale Generating XML output for namespace mom_eos Generating XML output for namespace mom_ice_shelf Generating XML output for namespace mom_meke Generating XML output for namespace mom_unit_scaling Generating XML output for file _ALE.dox Generating XML output for file _ALE_timestep.dox Generating XML output for file MOM_ALE.F90 Generating XML output for file _Baroclinic_Momentum.dox Generating XML output for file _Barotropic_Baroclinic_Coupling.dox Generating XML output for file _Barotropic_Momentum.dox Generating XML output for file _Discrete_Coriolis.dox Generating XML output for file _Discrete_grids.dox Generating XML output for file _Discrete_OBC.dox Generating XML output for file _Discrete_PG.dox Generating XML output for file _Energetic_consistancy.dox Generating XML output for file _Finite_difference.dox Generating XML output for file _General_coordinate.dox Generating XML output for file _Governing.dox Generating XML output for file _Notation.dox Generating XML output for file _PPM.dox Generating XML output for file _Sea_ice.dox Generating XML output for file _Solar_radiation.dox Generating XML output for file _Specifics.dox Generating XML output for file _Time_Filter.dox Generating XML output for file MOM.F90 Generating XML output for file _Equation_of_State.dox Generating XML output for file MOM_EOS.F90 Generating XML output for file _Diagnostics.dox Generating XML output for file _Domain_decomposition.dox Generating XML output for file _Global_grids.dox Generating XML output for file _Horizontal_indexing.dox Generating XML output for file _Parallel_IO.dox Generating XML output for file _Regional_grids.dox Generating XML output for file _Runtime_parameter_system.dox Generating XML output for file _Testing.dox Generating XML output for file _Vertical_grids.dox Generating XML output for file MOM_unit_scaling.F90 Generating XML output for file MOM_ice_shelf.F90 Generating XML output for file MOM_MEKE.F90 Generating XML output for file _CVMix_KPP.dox Generating XML output for file _Advection.dox Generating XML output for file _Discrete_tracer.dox Generating XML output for file _Horizontal_diffusion.dox Generating XML output for file _Passive_tracer.dox Generating XML output for file _Tracer_fluxes.dox Generating XML output for file _Tracer_timestep.dox Generating XML output for file _Tracer_Transport.dox Generating XML output for file _Vertical_diffusion.dox Generating XML output for page ALE Generating XML output for page ALE_Timestep Generating XML output for page Baroclinic_Momentum_Equations Generating XML output for page Barotropic_Baroclinic_Coupling Generating XML output for page Barotropic_Momentum_Equations Generating XML output for page Discrete_Coriolis Generating XML output for page Discrete_Grids Generating XML output for page Discrete_OBC Generating XML output for page Discrete_PG Generating XML output for page Energetic_Consistency Generating XML output for page Finite_Difference_Operators Generating XML output for page General_Coordinate Generating XML output for page Governing_Equations Generating XML output for page Notation Generating XML output for page PPM Generating XML output for page Sea_Ice Generating XML output for page Solar_Radiation Generating XML output for page Specifics Generating XML output for page Time_Filtering Generating XML output for page Equation_of_State Generating XML output for page Diagnostics Generating XML output for page Domain_Decomposition Generating XML output for page Global_Grids Generating XML output for page Horizontal_Indexing Generating XML output for page Parallel_IO Generating XML output for page Regional_Grids Generating XML output for page Runtime_Parameter_System Generating XML output for page Testing Generating XML output for page Vertical_Grids Generating XML output for page CVMix_KPP Generating XML output for page Tracer_Advection Generating XML output for page Discrete_Tracer Generating XML output for page Horizontal_Diffusion Generating XML output for page Passive_Tracers Generating XML output for page Tracer_Fluxes Generating XML output for page Tracer_Timestep Generating XML output for page Tracer_Transport_Equations Generating XML output for page Vertical_Diffusion Generating XML output for page citelist Generate XML output for dir /home/cermak/src/MOM6/src/ALE/ Generate XML output for dir /home/cermak/src/MOM6/src/core/ Generate XML output for dir /home/cermak/src/MOM6/src/equation_of_state/ Generate XML output for dir /home/cermak/src/MOM6/src/framework/ Generate XML output for dir /home/cermak/src/MOM6/src/ice_shelf/ Generate XML output for dir /home/cermak/src/MOM6/src/parameterizations/lateral/ Generate XML output for dir /home/cermak/src/MOM6/src/parameterizations/ Generate XML output for dir /home/cermak/src/MOM6/src/ lookup cache used 776/65536 hits=5732 misses=903 finished... Build finished. The html files are in _build/APIs.