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Parsing file /home/cermak/src/MOM6.devrob/src/framework/MOM_diag_manager_wrapper.F90...
Preprocessing /home/cermak/src/MOM6.devrob/src/framework/MOM_diag_mediator.F90...
Parsing file /home/cermak/src/MOM6.devrob/src/framework/MOM_diag_mediator.F90...
Preprocessing /home/cermak/src/MOM6.devrob/src/framework/MOM_diag_remap.F90...
Parsing file /home/cermak/src/MOM6.devrob/src/framework/MOM_diag_remap.F90...
Preprocessing /home/cermak/src/MOM6.devrob/src/framework/MOM_diag_vkernels.F90...
Parsing file /home/cermak/src/MOM6.devrob/src/framework/MOM_diag_vkernels.F90...
Preprocessing /home/cermak/src/MOM6.devrob/src/framework/MOM_document.F90...
Parsing file /home/cermak/src/MOM6.devrob/src/framework/MOM_document.F90...
Preprocessing /home/cermak/src/MOM6.devrob/src/framework/MOM_domains.F90...
Parsing file /home/cermak/src/MOM6.devrob/src/framework/MOM_domains.F90...
Preprocessing /home/cermak/src/MOM6.devrob/src/framework/MOM_dyn_horgrid.F90...
Parsing file /home/cermak/src/MOM6.devrob/src/framework/MOM_dyn_horgrid.F90...
Preprocessing /home/cermak/src/MOM6.devrob/src/framework/MOM_error_handler.F90...
Parsing file /home/cermak/src/MOM6.devrob/src/framework/MOM_error_handler.F90...
Preprocessing /home/cermak/src/MOM6.devrob/src/framework/MOM_file_parser.F90...
Parsing file /home/cermak/src/MOM6.devrob/src/framework/MOM_file_parser.F90...
Preprocessing /home/cermak/src/MOM6.devrob/src/framework/MOM_get_input.F90...
Parsing file /home/cermak/src/MOM6.devrob/src/framework/MOM_get_input.F90...
Preprocessing /home/cermak/src/MOM6.devrob/src/framework/MOM_hor_index.F90...
Parsing file /home/cermak/src/MOM6.devrob/src/framework/MOM_hor_index.F90...
Preprocessing /home/cermak/src/MOM6.devrob/src/framework/MOM_horizontal_regridding.F90...
Parsing file /home/cermak/src/MOM6.devrob/src/framework/MOM_horizontal_regridding.F90...
Preprocessing /home/cermak/src/MOM6.devrob/src/framework/MOM_intrinsic_functions.F90...
Parsing file /home/cermak/src/MOM6.devrob/src/framework/MOM_intrinsic_functions.F90...
Preprocessing /home/cermak/src/MOM6.devrob/src/framework/MOM_io.F90...
Parsing file /home/cermak/src/MOM6.devrob/src/framework/MOM_io.F90...
Preprocessing /home/cermak/src/MOM6.devrob/src/framework/MOM_memory_macros.h...
Parsing file /home/cermak/src/MOM6.devrob/src/framework/MOM_memory_macros.h...
Preprocessing /home/cermak/src/MOM6.devrob/src/framework/MOM_random.F90...
Parsing file /home/cermak/src/MOM6.devrob/src/framework/MOM_random.F90...
Preprocessing /home/cermak/src/MOM6.devrob/src/framework/MOM_restart.F90...
Parsing file /home/cermak/src/MOM6.devrob/src/framework/MOM_restart.F90...
Preprocessing /home/cermak/src/MOM6.devrob/src/framework/MOM_safe_alloc.F90...
Parsing file /home/cermak/src/MOM6.devrob/src/framework/MOM_safe_alloc.F90...
Preprocessing /home/cermak/src/MOM6.devrob/src/framework/MOM_spatial_means.F90...
Parsing file /home/cermak/src/MOM6.devrob/src/framework/MOM_spatial_means.F90...
Preprocessing /home/cermak/src/MOM6.devrob/src/framework/MOM_string_functions.F90...
Parsing file /home/cermak/src/MOM6.devrob/src/framework/MOM_string_functions.F90...
Preprocessing /home/cermak/src/MOM6.devrob/src/framework/MOM_time_manager.F90...
Parsing file /home/cermak/src/MOM6.devrob/src/framework/MOM_time_manager.F90...
Preprocessing /home/cermak/src/MOM6.devrob/src/framework/MOM_transform_FMS.F90...
Parsing file /home/cermak/src/MOM6.devrob/src/framework/MOM_transform_FMS.F90...
Preprocessing /home/cermak/src/MOM6.devrob/src/framework/MOM_unit_scaling.F90...
Parsing file /home/cermak/src/MOM6.devrob/src/framework/MOM_unit_scaling.F90...
Preprocessing /home/cermak/src/MOM6.devrob/src/framework/MOM_write_cputime.F90...
Parsing file /home/cermak/src/MOM6.devrob/src/framework/MOM_write_cputime.F90...
Preprocessing /home/cermak/src/MOM6.devrob/src/framework/version_variable.h...
Parsing file /home/cermak/src/MOM6.devrob/src/framework/version_variable.h...
Preprocessing /home/cermak/src/MOM6.devrob/src/ice_shelf/MOM_ice_shelf.F90...
Parsing file /home/cermak/src/MOM6.devrob/src/ice_shelf/MOM_ice_shelf.F90...
Preprocessing /home/cermak/src/MOM6.devrob/src/ice_shelf/MOM_ice_shelf_dynamics.F90...
Parsing file /home/cermak/src/MOM6.devrob/src/ice_shelf/MOM_ice_shelf_dynamics.F90...
Preprocessing /home/cermak/src/MOM6.devrob/src/ice_shelf/MOM_ice_shelf_initialize.F90...
Parsing file /home/cermak/src/MOM6.devrob/src/ice_shelf/MOM_ice_shelf_initialize.F90...
Preprocessing /home/cermak/src/MOM6.devrob/src/ice_shelf/MOM_ice_shelf_state.F90...
Parsing file /home/cermak/src/MOM6.devrob/src/ice_shelf/MOM_ice_shelf_state.F90...
Preprocessing /home/cermak/src/MOM6.devrob/src/ice_shelf/MOM_marine_ice.F90...
Parsing file /home/cermak/src/MOM6.devrob/src/ice_shelf/MOM_marine_ice.F90...
Preprocessing /home/cermak/src/MOM6.devrob/src/ice_shelf/user_shelf_init.F90...
Parsing file /home/cermak/src/MOM6.devrob/src/ice_shelf/user_shelf_init.F90...
Preprocessing /home/cermak/src/MOM6.devrob/src/initialization/MOM_coord_initialization.F90...
Parsing file /home/cermak/src/MOM6.devrob/src/initialization/MOM_coord_initialization.F90...
Preprocessing /home/cermak/src/MOM6.devrob/src/initialization/MOM_fixed_initialization.F90...
Parsing file /home/cermak/src/MOM6.devrob/src/initialization/MOM_fixed_initialization.F90...
Preprocessing /home/cermak/src/MOM6.devrob/src/initialization/MOM_grid_initialize.F90...
Parsing file /home/cermak/src/MOM6.devrob/src/initialization/MOM_grid_initialize.F90...
Preprocessing /home/cermak/src/MOM6.devrob/src/initialization/MOM_shared_initialization.F90...
Parsing file /home/cermak/src/MOM6.devrob/src/initialization/MOM_shared_initialization.F90...
Preprocessing /home/cermak/src/MOM6.devrob/src/initialization/MOM_state_initialization.F90...
Parsing file /home/cermak/src/MOM6.devrob/src/initialization/MOM_state_initialization.F90...
Preprocessing /home/cermak/src/MOM6.devrob/src/initialization/MOM_tracer_initialization_from_Z.F90...
Parsing file /home/cermak/src/MOM6.devrob/src/initialization/MOM_tracer_initialization_from_Z.F90...
Preprocessing /home/cermak/src/MOM6.devrob/src/ocean_data_assim/MOM_oda_driver.F90...
Parsing file /home/cermak/src/MOM6.devrob/src/ocean_data_assim/MOM_oda_driver.F90...
Preprocessing /home/cermak/src/MOM6.devrob/src/parameterizations/lateral/MOM_hor_visc.F90...
Parsing file /home/cermak/src/MOM6.devrob/src/parameterizations/lateral/MOM_hor_visc.F90...
Preprocessing /home/cermak/src/MOM6.devrob/src/parameterizations/lateral/MOM_internal_tides.F90...
Parsing file /home/cermak/src/MOM6.devrob/src/parameterizations/lateral/MOM_internal_tides.F90...
Preprocessing /home/cermak/src/MOM6.devrob/src/parameterizations/lateral/MOM_lateral_mixing_coeffs.F90...
Parsing file /home/cermak/src/MOM6.devrob/src/parameterizations/lateral/MOM_lateral_mixing_coeffs.F90...
Preprocessing /home/cermak/src/MOM6.devrob/src/parameterizations/lateral/MOM_MEKE.F90...
Parsing file /home/cermak/src/MOM6.devrob/src/parameterizations/lateral/MOM_MEKE.F90...
Preprocessing /home/cermak/src/MOM6.devrob/src/parameterizations/lateral/MOM_MEKE_types.F90...
Parsing file /home/cermak/src/MOM6.devrob/src/parameterizations/lateral/MOM_MEKE_types.F90...
Preprocessing /home/cermak/src/MOM6.devrob/src/parameterizations/lateral/MOM_mixed_layer_restrat.F90...
Parsing file /home/cermak/src/MOM6.devrob/src/parameterizations/lateral/MOM_mixed_layer_restrat.F90...
Preprocessing /home/cermak/src/MOM6.devrob/src/parameterizations/lateral/MOM_thickness_diffuse.F90...
Parsing file /home/cermak/src/MOM6.devrob/src/parameterizations/lateral/MOM_thickness_diffuse.F90...
Preprocessing /home/cermak/src/MOM6.devrob/src/parameterizations/lateral/MOM_tidal_forcing.F90...
Parsing file /home/cermak/src/MOM6.devrob/src/parameterizations/lateral/MOM_tidal_forcing.F90...
Preprocessing /home/cermak/src/MOM6.devrob/src/parameterizations/vertical/_CVMix_KPP.dox...
Parsing file /home/cermak/src/MOM6.devrob/src/parameterizations/vertical/_CVMix_KPP.dox...
Preprocessing /home/cermak/src/MOM6.devrob/src/parameterizations/vertical/MOM_ALE_sponge.F90...
Parsing file /home/cermak/src/MOM6.devrob/src/parameterizations/vertical/MOM_ALE_sponge.F90...
Preprocessing /home/cermak/src/MOM6.devrob/src/parameterizations/vertical/MOM_bkgnd_mixing.F90...
Parsing file /home/cermak/src/MOM6.devrob/src/parameterizations/vertical/MOM_bkgnd_mixing.F90...
Preprocessing /home/cermak/src/MOM6.devrob/src/parameterizations/vertical/MOM_bulk_mixed_layer.F90...
Parsing file /home/cermak/src/MOM6.devrob/src/parameterizations/vertical/MOM_bulk_mixed_layer.F90...
Preprocessing /home/cermak/src/MOM6.devrob/src/parameterizations/vertical/MOM_CVMix_conv.F90...
Parsing file /home/cermak/src/MOM6.devrob/src/parameterizations/vertical/MOM_CVMix_conv.F90...
Preprocessing /home/cermak/src/MOM6.devrob/src/parameterizations/vertical/MOM_CVMix_ddiff.F90...
Parsing file /home/cermak/src/MOM6.devrob/src/parameterizations/vertical/MOM_CVMix_ddiff.F90...
Preprocessing /home/cermak/src/MOM6.devrob/src/parameterizations/vertical/MOM_CVMix_KPP.F90...
Parsing file /home/cermak/src/MOM6.devrob/src/parameterizations/vertical/MOM_CVMix_KPP.F90...
Preprocessing /home/cermak/src/MOM6.devrob/src/parameterizations/vertical/MOM_CVMix_shear.F90...
Parsing file /home/cermak/src/MOM6.devrob/src/parameterizations/vertical/MOM_CVMix_shear.F90...
Preprocessing /home/cermak/src/MOM6.devrob/src/parameterizations/vertical/MOM_diabatic_aux.F90...
Parsing file /home/cermak/src/MOM6.devrob/src/parameterizations/vertical/MOM_diabatic_aux.F90...
Preprocessing /home/cermak/src/MOM6.devrob/src/parameterizations/vertical/MOM_diabatic_driver.F90...
Parsing file /home/cermak/src/MOM6.devrob/src/parameterizations/vertical/MOM_diabatic_driver.F90...
Preprocessing /home/cermak/src/MOM6.devrob/src/parameterizations/vertical/MOM_diapyc_energy_req.F90...
Parsing file /home/cermak/src/MOM6.devrob/src/parameterizations/vertical/MOM_diapyc_energy_req.F90...
Preprocessing /home/cermak/src/MOM6.devrob/src/parameterizations/vertical/MOM_energetic_PBL.F90...
Parsing file /home/cermak/src/MOM6.devrob/src/parameterizations/vertical/MOM_energetic_PBL.F90...
Preprocessing /home/cermak/src/MOM6.devrob/src/parameterizations/vertical/MOM_entrain_diffusive.F90...
Parsing file /home/cermak/src/MOM6.devrob/src/parameterizations/vertical/MOM_entrain_diffusive.F90...
Preprocessing /home/cermak/src/MOM6.devrob/src/parameterizations/vertical/MOM_full_convection.F90...
Parsing file /home/cermak/src/MOM6.devrob/src/parameterizations/vertical/MOM_full_convection.F90...
Preprocessing /home/cermak/src/MOM6.devrob/src/parameterizations/vertical/MOM_geothermal.F90...
Parsing file /home/cermak/src/MOM6.devrob/src/parameterizations/vertical/MOM_geothermal.F90...
Preprocessing /home/cermak/src/MOM6.devrob/src/parameterizations/vertical/MOM_internal_tide_input.F90...
Parsing file /home/cermak/src/MOM6.devrob/src/parameterizations/vertical/MOM_internal_tide_input.F90...
Preprocessing /home/cermak/src/MOM6.devrob/src/parameterizations/vertical/MOM_kappa_shear.F90...
Parsing file /home/cermak/src/MOM6.devrob/src/parameterizations/vertical/MOM_kappa_shear.F90...
Preprocessing /home/cermak/src/MOM6.devrob/src/parameterizations/vertical/MOM_opacity.F90...
Parsing file /home/cermak/src/MOM6.devrob/src/parameterizations/vertical/MOM_opacity.F90...
Preprocessing /home/cermak/src/MOM6.devrob/src/parameterizations/vertical/MOM_regularize_layers.F90...
Parsing file /home/cermak/src/MOM6.devrob/src/parameterizations/vertical/MOM_regularize_layers.F90...
Preprocessing /home/cermak/src/MOM6.devrob/src/parameterizations/vertical/MOM_set_diffusivity.F90...
Parsing file /home/cermak/src/MOM6.devrob/src/parameterizations/vertical/MOM_set_diffusivity.F90...
Preprocessing /home/cermak/src/MOM6.devrob/src/parameterizations/vertical/MOM_set_viscosity.F90...
Parsing file /home/cermak/src/MOM6.devrob/src/parameterizations/vertical/MOM_set_viscosity.F90...
Preprocessing /home/cermak/src/MOM6.devrob/src/parameterizations/vertical/MOM_sponge.F90...
Parsing file /home/cermak/src/MOM6.devrob/src/parameterizations/vertical/MOM_sponge.F90...
Preprocessing /home/cermak/src/MOM6.devrob/src/parameterizations/vertical/MOM_tidal_mixing.F90...
Parsing file /home/cermak/src/MOM6.devrob/src/parameterizations/vertical/MOM_tidal_mixing.F90...
Preprocessing /home/cermak/src/MOM6.devrob/src/parameterizations/vertical/MOM_vert_friction.F90...
Parsing file /home/cermak/src/MOM6.devrob/src/parameterizations/vertical/MOM_vert_friction.F90...
Preprocessing /home/cermak/src/MOM6.devrob/src/tracer/_Advection.dox...
Parsing file /home/cermak/src/MOM6.devrob/src/tracer/_Advection.dox...
Preprocessing /home/cermak/src/MOM6.devrob/src/tracer/_Discrete_tracer.dox...
Parsing file /home/cermak/src/MOM6.devrob/src/tracer/_Discrete_tracer.dox...
Preprocessing /home/cermak/src/MOM6.devrob/src/tracer/_Horizontal_diffusion.dox...
Parsing file /home/cermak/src/MOM6.devrob/src/tracer/_Horizontal_diffusion.dox...
Preprocessing /home/cermak/src/MOM6.devrob/src/tracer/_Passive_tracer.dox...
Parsing file /home/cermak/src/MOM6.devrob/src/tracer/_Passive_tracer.dox...
Preprocessing /home/cermak/src/MOM6.devrob/src/tracer/_Tracer_fluxes.dox...
Parsing file /home/cermak/src/MOM6.devrob/src/tracer/_Tracer_fluxes.dox...
Preprocessing /home/cermak/src/MOM6.devrob/src/tracer/_Tracer_timestep.dox...
Parsing file /home/cermak/src/MOM6.devrob/src/tracer/_Tracer_timestep.dox...
Preprocessing /home/cermak/src/MOM6.devrob/src/tracer/_Tracer_Transport.dox...
Parsing file /home/cermak/src/MOM6.devrob/src/tracer/_Tracer_Transport.dox...
Preprocessing /home/cermak/src/MOM6.devrob/src/tracer/_Vertical_diffusion.dox...
Parsing file /home/cermak/src/MOM6.devrob/src/tracer/_Vertical_diffusion.dox...
Preprocessing /home/cermak/src/MOM6.devrob/src/tracer/advection_test_tracer.F90...
Parsing file /home/cermak/src/MOM6.devrob/src/tracer/advection_test_tracer.F90...
Preprocessing /home/cermak/src/MOM6.devrob/src/tracer/boundary_impulse_tracer.F90...
Parsing file /home/cermak/src/MOM6.devrob/src/tracer/boundary_impulse_tracer.F90...
Preprocessing /home/cermak/src/MOM6.devrob/src/tracer/DOME_tracer.F90...
Parsing file /home/cermak/src/MOM6.devrob/src/tracer/DOME_tracer.F90...
Preprocessing /home/cermak/src/MOM6.devrob/src/tracer/dye_example.F90...
Parsing file /home/cermak/src/MOM6.devrob/src/tracer/dye_example.F90...
Preprocessing /home/cermak/src/MOM6.devrob/src/tracer/dyed_obc_tracer.F90...
Parsing file /home/cermak/src/MOM6.devrob/src/tracer/dyed_obc_tracer.F90...
Preprocessing /home/cermak/src/MOM6.devrob/src/tracer/ideal_age_example.F90...
Parsing file /home/cermak/src/MOM6.devrob/src/tracer/ideal_age_example.F90...
Preprocessing /home/cermak/src/MOM6.devrob/src/tracer/ISOMIP_tracer.F90...
Parsing file /home/cermak/src/MOM6.devrob/src/tracer/ISOMIP_tracer.F90...
Preprocessing /home/cermak/src/MOM6.devrob/src/tracer/MOM_generic_tracer.F90...
Parsing file /home/cermak/src/MOM6.devrob/src/tracer/MOM_generic_tracer.F90...
Preprocessing /home/cermak/src/MOM6.devrob/src/tracer/MOM_lateral_boundary_diffusion.F90...
Parsing file /home/cermak/src/MOM6.devrob/src/tracer/MOM_lateral_boundary_diffusion.F90...
Preprocessing /home/cermak/src/MOM6.devrob/src/tracer/MOM_neutral_diffusion.F90...
Parsing file /home/cermak/src/MOM6.devrob/src/tracer/MOM_neutral_diffusion.F90...
Preprocessing /home/cermak/src/MOM6.devrob/src/tracer/MOM_OCMIP2_CFC.F90...
Parsing file /home/cermak/src/MOM6.devrob/src/tracer/MOM_OCMIP2_CFC.F90...
Preprocessing /home/cermak/src/MOM6.devrob/src/tracer/MOM_offline_aux.F90...
Parsing file /home/cermak/src/MOM6.devrob/src/tracer/MOM_offline_aux.F90...
Preprocessing /home/cermak/src/MOM6.devrob/src/tracer/MOM_offline_main.F90...
Parsing file /home/cermak/src/MOM6.devrob/src/tracer/MOM_offline_main.F90...
Preprocessing /home/cermak/src/MOM6.devrob/src/tracer/MOM_tracer_advect.F90...
Parsing file /home/cermak/src/MOM6.devrob/src/tracer/MOM_tracer_advect.F90...
Preprocessing /home/cermak/src/MOM6.devrob/src/tracer/MOM_tracer_diabatic.F90...
Parsing file /home/cermak/src/MOM6.devrob/src/tracer/MOM_tracer_diabatic.F90...
Preprocessing /home/cermak/src/MOM6.devrob/src/tracer/MOM_tracer_flow_control.F90...
Parsing file /home/cermak/src/MOM6.devrob/src/tracer/MOM_tracer_flow_control.F90...
Preprocessing /home/cermak/src/MOM6.devrob/src/tracer/MOM_tracer_hor_diff.F90...
Parsing file /home/cermak/src/MOM6.devrob/src/tracer/MOM_tracer_hor_diff.F90...
Preprocessing /home/cermak/src/MOM6.devrob/src/tracer/MOM_tracer_registry.F90...
Parsing file /home/cermak/src/MOM6.devrob/src/tracer/MOM_tracer_registry.F90...
Preprocessing /home/cermak/src/MOM6.devrob/src/tracer/MOM_tracer_Z_init.F90...
Parsing file /home/cermak/src/MOM6.devrob/src/tracer/MOM_tracer_Z_init.F90...
Preprocessing /home/cermak/src/MOM6.devrob/src/tracer/oil_tracer.F90...
Parsing file /home/cermak/src/MOM6.devrob/src/tracer/oil_tracer.F90...
Preprocessing /home/cermak/src/MOM6.devrob/src/tracer/pseudo_salt_tracer.F90...
Parsing file /home/cermak/src/MOM6.devrob/src/tracer/pseudo_salt_tracer.F90...
Preprocessing /home/cermak/src/MOM6.devrob/src/tracer/RGC_tracer.F90...
Parsing file /home/cermak/src/MOM6.devrob/src/tracer/RGC_tracer.F90...
Preprocessing /home/cermak/src/MOM6.devrob/src/tracer/tracer_example.F90...
Parsing file /home/cermak/src/MOM6.devrob/src/tracer/tracer_example.F90...
Preprocessing /home/cermak/src/MOM6.devrob/src/user/adjustment_initialization.F90...
Parsing file /home/cermak/src/MOM6.devrob/src/user/adjustment_initialization.F90...
Preprocessing /home/cermak/src/MOM6.devrob/src/user/baroclinic_zone_initialization.F90...
Parsing file /home/cermak/src/MOM6.devrob/src/user/baroclinic_zone_initialization.F90...
Preprocessing /home/cermak/src/MOM6.devrob/src/user/basin_builder.F90...
Parsing file /home/cermak/src/MOM6.devrob/src/user/basin_builder.F90...
Preprocessing /home/cermak/src/MOM6.devrob/src/user/benchmark_initialization.F90...
Parsing file /home/cermak/src/MOM6.devrob/src/user/benchmark_initialization.F90...
Preprocessing /home/cermak/src/MOM6.devrob/src/user/BFB_initialization.F90...
Parsing file /home/cermak/src/MOM6.devrob/src/user/BFB_initialization.F90...
Preprocessing /home/cermak/src/MOM6.devrob/src/user/BFB_surface_forcing.F90...
Parsing file /home/cermak/src/MOM6.devrob/src/user/BFB_surface_forcing.F90...
Preprocessing /home/cermak/src/MOM6.devrob/src/user/circle_obcs_initialization.F90...
Parsing file /home/cermak/src/MOM6.devrob/src/user/circle_obcs_initialization.F90...
Preprocessing /home/cermak/src/MOM6.devrob/src/user/dense_water_initialization.F90...
Parsing file /home/cermak/src/MOM6.devrob/src/user/dense_water_initialization.F90...
Preprocessing /home/cermak/src/MOM6.devrob/src/user/DOME2d_initialization.F90...
Parsing file /home/cermak/src/MOM6.devrob/src/user/DOME2d_initialization.F90...
Preprocessing /home/cermak/src/MOM6.devrob/src/user/DOME_initialization.F90...
Parsing file /home/cermak/src/MOM6.devrob/src/user/DOME_initialization.F90...
Preprocessing /home/cermak/src/MOM6.devrob/src/user/dumbbell_initialization.F90...
Parsing file /home/cermak/src/MOM6.devrob/src/user/dumbbell_initialization.F90...
Preprocessing /home/cermak/src/MOM6.devrob/src/user/dumbbell_surface_forcing.F90...
Parsing file /home/cermak/src/MOM6.devrob/src/user/dumbbell_surface_forcing.F90...
Preprocessing /home/cermak/src/MOM6.devrob/src/user/dyed_channel_initialization.F90...
Parsing file /home/cermak/src/MOM6.devrob/src/user/dyed_channel_initialization.F90...
Preprocessing /home/cermak/src/MOM6.devrob/src/user/dyed_obcs_initialization.F90...
Parsing file /home/cermak/src/MOM6.devrob/src/user/dyed_obcs_initialization.F90...
Preprocessing /home/cermak/src/MOM6.devrob/src/user/external_gwave_initialization.F90...
Parsing file /home/cermak/src/MOM6.devrob/src/user/external_gwave_initialization.F90...
Preprocessing /home/cermak/src/MOM6.devrob/src/user/Idealized_Hurricane.F90...
Parsing file /home/cermak/src/MOM6.devrob/src/user/Idealized_Hurricane.F90...
Preprocessing /home/cermak/src/MOM6.devrob/src/user/ISOMIP_initialization.F90...
Parsing file /home/cermak/src/MOM6.devrob/src/user/ISOMIP_initialization.F90...
Preprocessing /home/cermak/src/MOM6.devrob/src/user/Kelvin_initialization.F90...
Parsing file /home/cermak/src/MOM6.devrob/src/user/Kelvin_initialization.F90...
Preprocessing /home/cermak/src/MOM6.devrob/src/user/lock_exchange_initialization.F90...
Parsing file /home/cermak/src/MOM6.devrob/src/user/lock_exchange_initialization.F90...
Preprocessing /home/cermak/src/MOM6.devrob/src/user/MOM_controlled_forcing.F90...
Parsing file /home/cermak/src/MOM6.devrob/src/user/MOM_controlled_forcing.F90...
Preprocessing /home/cermak/src/MOM6.devrob/src/user/MOM_wave_interface.F90...
Parsing file /home/cermak/src/MOM6.devrob/src/user/MOM_wave_interface.F90...
Preprocessing /home/cermak/src/MOM6.devrob/src/user/Neverworld_initialization.F90...
Parsing file /home/cermak/src/MOM6.devrob/src/user/Neverworld_initialization.F90...
Preprocessing /home/cermak/src/MOM6.devrob/src/user/Phillips_initialization.F90...
Parsing file /home/cermak/src/MOM6.devrob/src/user/Phillips_initialization.F90...
Preprocessing /home/cermak/src/MOM6.devrob/src/user/RGC_initialization.F90...
Parsing file /home/cermak/src/MOM6.devrob/src/user/RGC_initialization.F90...
Preprocessing /home/cermak/src/MOM6.devrob/src/user/Rossby_front_2d_initialization.F90...
Parsing file /home/cermak/src/MOM6.devrob/src/user/Rossby_front_2d_initialization.F90...
Preprocessing /home/cermak/src/MOM6.devrob/src/user/SCM_CVMix_tests.F90...
Parsing file /home/cermak/src/MOM6.devrob/src/user/SCM_CVMix_tests.F90...
Preprocessing /home/cermak/src/MOM6.devrob/src/user/seamount_initialization.F90...
Parsing file /home/cermak/src/MOM6.devrob/src/user/seamount_initialization.F90...
Preprocessing /home/cermak/src/MOM6.devrob/src/user/shelfwave_initialization.F90...
Parsing file /home/cermak/src/MOM6.devrob/src/user/shelfwave_initialization.F90...
Preprocessing /home/cermak/src/MOM6.devrob/src/user/sloshing_initialization.F90...
Parsing file /home/cermak/src/MOM6.devrob/src/user/sloshing_initialization.F90...
Preprocessing /home/cermak/src/MOM6.devrob/src/user/soliton_initialization.F90...
Parsing file /home/cermak/src/MOM6.devrob/src/user/soliton_initialization.F90...
Preprocessing /home/cermak/src/MOM6.devrob/src/user/supercritical_initialization.F90...
Parsing file /home/cermak/src/MOM6.devrob/src/user/supercritical_initialization.F90...
Preprocessing /home/cermak/src/MOM6.devrob/src/user/tidal_bay_initialization.F90...
Parsing file /home/cermak/src/MOM6.devrob/src/user/tidal_bay_initialization.F90...
Preprocessing /home/cermak/src/MOM6.devrob/src/user/user_change_diffusivity.F90...
Parsing file /home/cermak/src/MOM6.devrob/src/user/user_change_diffusivity.F90...
Preprocessing /home/cermak/src/MOM6.devrob/src/user/user_initialization.F90...
Parsing file /home/cermak/src/MOM6.devrob/src/user/user_initialization.F90...
Preprocessing /home/cermak/src/MOM6.devrob/src/user/user_revise_forcing.F90...
Parsing file /home/cermak/src/MOM6.devrob/src/user/user_revise_forcing.F90...
Reading /home/cermak/src/MOM6.devrob/docs/front_page.md...
Preprocessing /home/cermak/src/MOM6.devrob/config_src/solo_driver/atmos_ocean_fluxes.F90...
Parsing file /home/cermak/src/MOM6.devrob/config_src/solo_driver/atmos_ocean_fluxes.F90...
Preprocessing /home/cermak/src/MOM6.devrob/config_src/solo_driver/MESO_surface_forcing.F90...
Parsing file /home/cermak/src/MOM6.devrob/config_src/solo_driver/MESO_surface_forcing.F90...
Preprocessing /home/cermak/src/MOM6.devrob/config_src/solo_driver/MOM_driver.F90...
Parsing file /home/cermak/src/MOM6.devrob/config_src/solo_driver/MOM_driver.F90...
Preprocessing /home/cermak/src/MOM6.devrob/config_src/solo_driver/MOM_surface_forcing.F90...
Parsing file /home/cermak/src/MOM6.devrob/config_src/solo_driver/MOM_surface_forcing.F90...
Preprocessing /home/cermak/src/MOM6.devrob/config_src/solo_driver/user_surface_forcing.F90...
Parsing file /home/cermak/src/MOM6.devrob/config_src/solo_driver/user_surface_forcing.F90...
Preprocessing /home/cermak/src/MOM6.devrob/config_src/dynamic_symmetric/MOM_memory.h...
Parsing file /home/cermak/src/MOM6.devrob/config_src/dynamic_symmetric/MOM_memory.h...
Preprocessing /home/cermak/src/MOM6.devrob/config_src/external/GFDL_ocean_BGC/FMS_coupler_util.F90...
Parsing file /home/cermak/src/MOM6.devrob/config_src/external/GFDL_ocean_BGC/FMS_coupler_util.F90...
Preprocessing /home/cermak/src/MOM6.devrob/config_src/external/GFDL_ocean_BGC/generic_tracer.F90...
Parsing file /home/cermak/src/MOM6.devrob/config_src/external/GFDL_ocean_BGC/generic_tracer.F90...
Preprocessing /home/cermak/src/MOM6.devrob/config_src/external/GFDL_ocean_BGC/generic_tracer_utils.F90...
Parsing file /home/cermak/src/MOM6.devrob/config_src/external/GFDL_ocean_BGC/generic_tracer_utils.F90...
Reading /home/cermak/src/MOM6.devrob/config_src/external/GFDL_ocean_BGC/README.md...
Reading /home/cermak/src/MOM6.devrob/config_src/external/ODA_hooks/kdtree.f90...
Parsing file /home/cermak/src/MOM6.devrob/config_src/external/ODA_hooks/kdtree.f90...
Preprocessing /home/cermak/src/MOM6.devrob/config_src/external/ODA_hooks/ocean_da_core.F90...
Parsing file /home/cermak/src/MOM6.devrob/config_src/external/ODA_hooks/ocean_da_core.F90...
Preprocessing /home/cermak/src/MOM6.devrob/config_src/external/ODA_hooks/ocean_da_types.F90...
Parsing file /home/cermak/src/MOM6.devrob/config_src/external/ODA_hooks/ocean_da_types.F90...
Reading /home/cermak/src/MOM6.devrob/config_src/external/ODA_hooks/README.md...
Preprocessing /home/cermak/src/MOM6.devrob/config_src/external/ODA_hooks/write_ocean_obs.F90...
Parsing file /home/cermak/src/MOM6.devrob/config_src/external/ODA_hooks/write_ocean_obs.F90...
Reading /home/cermak/src/MOM6.devrob/config_src/external/README.md...
Preprocessing /home/cermak/src/MOM6.devrob/config_src/coupled_driver/MOM_surface_forcing_gfdl.F90...
Parsing file /home/cermak/src/MOM6.devrob/config_src/coupled_driver/MOM_surface_forcing_gfdl.F90...
Preprocessing /home/cermak/src/MOM6.devrob/config_src/coupled_driver/ocean_model_MOM.F90...
Parsing file /home/cermak/src/MOM6.devrob/config_src/coupled_driver/ocean_model_MOM.F90...
Building macro definition list...
Building group list...
Building directory list...
Building namespace list...
Building file list...
Building class list...
Computing nesting relations for classes...
Associating documentation with classes...
Building example list...
Searching for enumerations...
Searching for documented typedefs...
Searching for members imported via using declarations...
Searching for included using directives...
Searching for documented variables...
Building interface member list...
Building member list...
Searching for friends...
Searching for documented defines...
Computing class inheritance relations...
Computing class usage relations...
Flushing cached template relations that have become invalid...
Computing class relations...
Add enum values to enums...
Searching for member function documentation...
Creating members for template instances...
Building page list...
Search for main page...
Computing page relations...
Determining the scope of groups...
Sorting lists...
Determining which enums are documented
Computing member relations...
Building full member lists recursively...
Adding members to member groups.
Distributing member group documentation.
Computing member references...
Inheriting documentation...
Generating disk names...
Adding source references...
Adding xrefitems...
Sorting member lists...
Setting anonymous enum type...
Computing dependencies between directories...
Generating citations page...
Counting members...
Counting data structures...
Resolving user defined references...
Finding anchors and sections in the documentation...
Transferring function references...
Combining using relations...
Adding members to index pages...
Correcting members for VHDL...
Generating style sheet...
Generating search indices...
Generating example documentation...
Generating file sources...
Generating code for file /home/cermak/src/MOM6.devrob/config_src/coupled_driver/MOM_surface_forcing_gfdl.F90...
Generating code for file /home/cermak/src/MOM6.devrob/config_src/coupled_driver/ocean_model_MOM.F90...
Generating code for file /home/cermak/src/MOM6.devrob/config_src/dynamic_symmetric/MOM_memory.h...
Generating code for file /home/cermak/src/MOM6.devrob/config_src/external/GFDL_ocean_BGC/FMS_coupler_util.F90...
Generating code for file /home/cermak/src/MOM6.devrob/config_src/external/GFDL_ocean_BGC/generic_tracer.F90...
Generating code for file /home/cermak/src/MOM6.devrob/config_src/external/GFDL_ocean_BGC/generic_tracer_utils.F90...
Parsing code for file /home/cermak/src/MOM6.devrob/config_src/external/GFDL_ocean_BGC/README.md...
Parsing code for file /home/cermak/src/MOM6.devrob/config_src/external/ODA_hooks/README.md...
Parsing code for file /home/cermak/src/MOM6.devrob/config_src/external/README.md...
Generating code for file /home/cermak/src/MOM6.devrob/config_src/external/ODA_hooks/kdtree.f90...
Generating code for file /home/cermak/src/MOM6.devrob/config_src/external/ODA_hooks/ocean_da_core.F90...
Generating code for file /home/cermak/src/MOM6.devrob/config_src/external/ODA_hooks/ocean_da_types.F90...
Generating code for file /home/cermak/src/MOM6.devrob/config_src/external/ODA_hooks/write_ocean_obs.F90...
Generating code for file /home/cermak/src/MOM6.devrob/config_src/solo_driver/atmos_ocean_fluxes.F90...
Generating code for file /home/cermak/src/MOM6.devrob/config_src/solo_driver/MESO_surface_forcing.F90...
Generating code for file /home/cermak/src/MOM6.devrob/config_src/solo_driver/MOM_driver.F90...
Generating code for file /home/cermak/src/MOM6.devrob/config_src/solo_driver/MOM_surface_forcing.F90...
Generating code for file /home/cermak/src/MOM6.devrob/config_src/solo_driver/user_surface_forcing.F90...
Parsing code for file front_page.md...
Parsing code for file /home/cermak/src/MOM6.devrob/src/ALE/_ALE.dox...
Parsing code for file /home/cermak/src/MOM6.devrob/src/ALE/_ALE_timestep.dox...
Generating code for file /home/cermak/src/MOM6.devrob/src/ALE/coord_adapt.F90...
Generating code for file /home/cermak/src/MOM6.devrob/src/ALE/coord_hycom.F90...
Generating code for file /home/cermak/src/MOM6.devrob/src/ALE/coord_rho.F90...
Generating code for file /home/cermak/src/MOM6.devrob/src/ALE/coord_sigma.F90...
Generating code for file /home/cermak/src/MOM6.devrob/src/ALE/coord_slight.F90...
Generating code for file /home/cermak/src/MOM6.devrob/src/ALE/coord_zlike.F90...
Generating code for file /home/cermak/src/MOM6.devrob/src/ALE/MOM_ALE.F90...
Generating code for file /home/cermak/src/MOM6.devrob/src/ALE/MOM_regridding.F90...
Generating code for file /home/cermak/src/MOM6.devrob/src/ALE/MOM_remapping.F90...
Generating code for file /home/cermak/src/MOM6.devrob/src/ALE/P1M_functions.F90...
Generating code for file /home/cermak/src/MOM6.devrob/src/ALE/P3M_functions.F90...
Generating code for file /home/cermak/src/MOM6.devrob/src/ALE/PCM_functions.F90...
Generating code for file /home/cermak/src/MOM6.devrob/src/ALE/PLM_functions.F90...
Generating code for file /home/cermak/src/MOM6.devrob/src/ALE/polynomial_functions.F90...
Generating code for file /home/cermak/src/MOM6.devrob/src/ALE/PPM_functions.F90...
Generating code for file /home/cermak/src/MOM6.devrob/src/ALE/PQM_functions.F90...
Generating code for file /home/cermak/src/MOM6.devrob/src/ALE/regrid_consts.F90...
Generating code for file /home/cermak/src/MOM6.devrob/src/ALE/regrid_edge_values.F90...
Generating code for file /home/cermak/src/MOM6.devrob/src/ALE/regrid_interp.F90...
Generating code for file /home/cermak/src/MOM6.devrob/src/ALE/regrid_solvers.F90...
Parsing code for file /home/cermak/src/MOM6.devrob/src/core/_Baroclinic_Momentum.dox...
Parsing code for file /home/cermak/src/MOM6.devrob/src/core/_Barotropic_Baroclinic_Coupling.dox...
Parsing code for file /home/cermak/src/MOM6.devrob/src/core/_Barotropic_Momentum.dox...
Parsing code for file /home/cermak/src/MOM6.devrob/src/core/_Discrete_Coriolis.dox...
Parsing code for file /home/cermak/src/MOM6.devrob/src/core/_Discrete_grids.dox...
Parsing code for file /home/cermak/src/MOM6.devrob/src/core/_Discrete_OBC.dox...
Parsing code for file /home/cermak/src/MOM6.devrob/src/core/_Discrete_PG.dox...
Parsing code for file /home/cermak/src/MOM6.devrob/src/core/_Energetic_consistancy.dox...
Parsing code for file /home/cermak/src/MOM6.devrob/src/core/_Finite_difference.dox...
Parsing code for file /home/cermak/src/MOM6.devrob/src/core/_General_coordinate.dox...
Parsing code for file /home/cermak/src/MOM6.devrob/src/core/_Governing.dox...
Parsing code for file /home/cermak/src/MOM6.devrob/src/core/_Notation.dox...
Parsing code for file /home/cermak/src/MOM6.devrob/src/core/_PPM.dox...
Parsing code for file /home/cermak/src/MOM6.devrob/src/core/_Sea_ice.dox...
Parsing code for file /home/cermak/src/MOM6.devrob/src/core/_Solar_radiation.dox...
Parsing code for file /home/cermak/src/MOM6.devrob/src/core/_Specifics.dox...
Parsing code for file /home/cermak/src/MOM6.devrob/src/core/_Timestep_Overview.dox...
Generating code for file /home/cermak/src/MOM6.devrob/src/core/MOM.F90...
Generating code for file /home/cermak/src/MOM6.devrob/src/core/MOM_barotropic.F90...
Generating code for file /home/cermak/src/MOM6.devrob/src/core/MOM_boundary_update.F90...
Generating code for file /home/cermak/src/MOM6.devrob/src/core/MOM_checksum_packages.F90...
Generating code for file /home/cermak/src/MOM6.devrob/src/core/MOM_continuity.F90...
Generating code for file /home/cermak/src/MOM6.devrob/src/core/MOM_continuity_PPM.F90...
Generating code for file /home/cermak/src/MOM6.devrob/src/core/MOM_CoriolisAdv.F90...
Generating code for file /home/cermak/src/MOM6.devrob/src/core/MOM_density_integrals.F90...
Generating code for file /home/cermak/src/MOM6.devrob/src/core/MOM_dynamics_split_RK2.F90...
Generating code for file /home/cermak/src/MOM6.devrob/src/core/MOM_dynamics_unsplit.F90...
Generating code for file /home/cermak/src/MOM6.devrob/src/core/MOM_dynamics_unsplit_RK2.F90...
Generating code for file /home/cermak/src/MOM6.devrob/src/core/MOM_forcing_type.F90...
Generating code for file /home/cermak/src/MOM6.devrob/src/core/MOM_grid.F90...
Generating code for file /home/cermak/src/MOM6.devrob/src/core/MOM_interface_heights.F90...
Generating code for file /home/cermak/src/MOM6.devrob/src/core/MOM_isopycnal_slopes.F90...
Generating code for file /home/cermak/src/MOM6.devrob/src/core/MOM_open_boundary.F90...
Generating code for file /home/cermak/src/MOM6.devrob/src/core/MOM_PressureForce.F90...
Generating code for file /home/cermak/src/MOM6.devrob/src/core/MOM_PressureForce_FV.F90...
Generating code for file /home/cermak/src/MOM6.devrob/src/core/MOM_PressureForce_Montgomery.F90...
Generating code for file /home/cermak/src/MOM6.devrob/src/core/MOM_transcribe_grid.F90...
Generating code for file /home/cermak/src/MOM6.devrob/src/core/MOM_unit_tests.F90...
Generating code for file /home/cermak/src/MOM6.devrob/src/core/MOM_variables.F90...
Generating code for file /home/cermak/src/MOM6.devrob/src/core/MOM_verticalGrid.F90...
Generating code for file /home/cermak/src/MOM6.devrob/src/diagnostics/MOM_debugging.F90...
Generating code for file /home/cermak/src/MOM6.devrob/src/diagnostics/MOM_diagnostics.F90...
Generating code for file /home/cermak/src/MOM6.devrob/src/diagnostics/MOM_obsolete_diagnostics.F90...
Generating code for file /home/cermak/src/MOM6.devrob/src/diagnostics/MOM_obsolete_params.F90...
Generating code for file /home/cermak/src/MOM6.devrob/src/diagnostics/MOM_PointAccel.F90...
Generating code for file /home/cermak/src/MOM6.devrob/src/diagnostics/MOM_sum_output.F90...
Generating code for file /home/cermak/src/MOM6.devrob/src/diagnostics/MOM_wave_speed.F90...
Generating code for file /home/cermak/src/MOM6.devrob/src/diagnostics/MOM_wave_structure.F90...
Parsing code for file /home/cermak/src/MOM6.devrob/src/equation_of_state/_Equation_of_State.dox...
Generating code for file /home/cermak/src/MOM6.devrob/src/equation_of_state/MOM_EOS.F90...
Generating code for file /home/cermak/src/MOM6.devrob/src/equation_of_state/MOM_EOS_linear.F90...
Generating code for file /home/cermak/src/MOM6.devrob/src/equation_of_state/MOM_EOS_NEMO.F90...
Generating code for file /home/cermak/src/MOM6.devrob/src/equation_of_state/MOM_EOS_TEOS10.F90...
Generating code for file /home/cermak/src/MOM6.devrob/src/equation_of_state/MOM_EOS_UNESCO.F90...
Generating code for file /home/cermak/src/MOM6.devrob/src/equation_of_state/MOM_EOS_Wright.F90...
Generating code for file /home/cermak/src/MOM6.devrob/src/equation_of_state/MOM_TFreeze.F90...
Parsing code for file /home/cermak/src/MOM6.devrob/src/framework/_Diagnostics.dox...
Parsing code for file /home/cermak/src/MOM6.devrob/src/framework/_Domain_decomposition.dox...
Parsing code for file /home/cermak/src/MOM6.devrob/src/framework/_Global_grids.dox...
Parsing code for file /home/cermak/src/MOM6.devrob/src/framework/_Horizontal_indexing.dox...
Parsing code for file /home/cermak/src/MOM6.devrob/src/framework/_Parallel_IO.dox...
Parsing code for file /home/cermak/src/MOM6.devrob/src/framework/_Regional_grids.dox...
Parsing code for file /home/cermak/src/MOM6.devrob/src/framework/_Runtime_parameter_system.dox...
Parsing code for file /home/cermak/src/MOM6.devrob/src/framework/_Testing.dox...
Parsing code for file /home/cermak/src/MOM6.devrob/src/framework/_Vertical_grids.dox...
Generating code for file /home/cermak/src/MOM6.devrob/src/framework/MOM_array_transform.F90...
Generating code for file /home/cermak/src/MOM6.devrob/src/framework/MOM_checksums.F90...
Generating code for file /home/cermak/src/MOM6.devrob/src/framework/MOM_coms.F90...
Generating code for file /home/cermak/src/MOM6.devrob/src/framework/MOM_constants.F90...
Generating code for file /home/cermak/src/MOM6.devrob/src/framework/MOM_cpu_clock.F90...
Generating code for file /home/cermak/src/MOM6.devrob/src/framework/MOM_diag_manager_wrapper.F90...
Generating code for file /home/cermak/src/MOM6.devrob/src/framework/MOM_diag_mediator.F90...
Generating code for file /home/cermak/src/MOM6.devrob/src/framework/MOM_diag_remap.F90...
Generating code for file /home/cermak/src/MOM6.devrob/src/framework/MOM_diag_vkernels.F90...
Generating code for file /home/cermak/src/MOM6.devrob/src/framework/MOM_document.F90...
Generating code for file /home/cermak/src/MOM6.devrob/src/framework/MOM_domains.F90...
Generating code for file /home/cermak/src/MOM6.devrob/src/framework/MOM_dyn_horgrid.F90...
Generating code for file /home/cermak/src/MOM6.devrob/src/framework/MOM_error_handler.F90...
Generating code for file /home/cermak/src/MOM6.devrob/src/framework/MOM_file_parser.F90...
Generating code for file /home/cermak/src/MOM6.devrob/src/framework/MOM_get_input.F90...
Generating code for file /home/cermak/src/MOM6.devrob/src/framework/MOM_hor_index.F90...
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Generating docs for namespace mom_diag_remap
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Generating docs for namespace mom_diag_vkernels
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Generating docs for namespace mom_diapyc_energy_req
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Generating docs for namespace mom_document
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Generating docs for namespace mom_domains
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lookup cache used 9298/65536 hits=80763 misses=12256
finished...
Post processing equations.
Build finished. The html files are in _build/APIs.