\begin{theindex}

  \item {/home/cermak/src/MOM6.devrob/config\_src/dynamic\_symmetric/MOM\_memory.h}, 
		\hyperpage{3683}
  \item {/home/cermak/src/MOM6.devrob/src/framework/MOM\_memory\_macros.h}, 
		\hyperpage{3684}

  \indexspace

  \item {absolute\_position}
    \subitem {mom\_neutral\_diffusion}, \hyperpage{1857}
  \item {absolute\_positions}
    \subitem {mom\_neutral\_diffusion}, \hyperpage{1857}
  \item {absorbremainingsw}
    \subitem {mom\_opacity}, \hyperpage{1979}
  \item {accumulate\_net\_input}
    \subitem {mom\_sum\_output}, \hyperpage{2425}
  \item {adcroft\_reciprocal}
    \subitem {mom\_dyn\_horgrid}, \hyperpage{1135}
    \subitem {mom\_grid}, \hyperpage{1486}
    \subitem {mom\_grid\_initialize}, \hyperpage{1495}
  \item {add\_detangling\_kh}
    \subitem {mom\_thickness\_diffuse}, \hyperpage{2482}
  \item {add\_diag\_to\_list}
    \subitem {mom\_diag\_mediator}, \hyperpage{918}
  \item {add\_drag\_diffusivity}
    \subitem {mom\_set\_diffusivity}, \hyperpage{2263}
  \item {add\_int\_tide\_diffusivity}
    \subitem {mom\_tidal\_mixing}, \hyperpage{2521}
  \item {add\_lotw\_bbl\_diffusivity}
    \subitem {mom\_set\_diffusivity}, \hyperpage{2267}
  \item {add\_mlrad\_diffusivity}
    \subitem {mom\_set\_diffusivity}, \hyperpage{2270}
  \item {add\_shelf\_flux}
    \subitem {mom\_ice\_shelf}, \hyperpage{1570}
  \item {add\_shelf\_forces}
    \subitem {mom\_ice\_shelf}, \hyperpage{1573}
  \item {add\_shelf\_pressure}
    \subitem {mom\_ice\_shelf}, \hyperpage{1574}
  \item {add\_xyz\_method}
    \subitem {mom\_diag\_mediator}, \hyperpage{919}
  \item {additive\_string}
    \subitem {mom\_energetic\_pbl}, \hyperpage{1215}
  \item {adiabatic}
    \subitem {mom\_diabatic\_driver}, \hyperpage{859}
  \item {adiabatic\_driver\_init}
    \subitem {mom\_diabatic\_driver}, \hyperpage{860}
  \item {adjust\_area\_mean\_to\_zero}
    \subitem {mom\_spatial\_means}, \hyperpage{2353}
  \item {adjust\_interface\_motion}
    \subitem {mom\_regridding}, \hyperpage{2134}
  \item {adjust\_local\_bt\_cont\_types}
    \subitem {mom\_barotropic}, \hyperpage{453}
  \item {adjust\_salt}
    \subitem {mom\_diabatic\_aux}, \hyperpage{833}
  \item {adjust\_ssh\_for\_p\_atm}
    \subitem {mom}, \hyperpage{351}
  \item {adjustetatofitbathymetry}
    \subitem {mom\_state\_initialization}, \hyperpage{2372}
  \item {adjustgridforintegrity}
    \subitem {mom\_ale}, \hyperpage{398}
  \item {adjustment\_initialization}, \hyperpage{147}
    \subitem {adjustment\_initialize\_temperature\_salinity}, 
		\hyperpage{147}
    \subitem {adjustment\_initialize\_thickness}, \hyperpage{149}
  \item {adjustment\_initialize\_temperature\_salinity}
    \subitem {adjustment\_initialization}, \hyperpage{147}
  \item {adjustment\_initialize\_thickness}
    \subitem {adjustment\_initialization}, \hyperpage{149}
  \item {adjustsegmentetatofitbathymetry}
    \subitem {mom\_open\_boundary}, \hyperpage{2001}
  \item {advect\_tracer}
    \subitem {mom\_tracer\_advect}, \hyperpage{2546}
  \item {advect\_x}
    \subitem {mom\_tracer\_advect}, \hyperpage{2550}
  \item {advect\_y}
    \subitem {mom\_tracer\_advect}, \hyperpage{2555}
  \item {advection\_test\_stock}
    \subitem {advection\_test\_tracer}, \hyperpage{152}
  \item {advection\_test\_tracer}, \hyperpage{152}
    \subitem {advection\_test\_stock}, \hyperpage{152}
    \subitem {advection\_test\_tracer\_column\_physics}, 
		\hyperpage{153}
    \subitem {advection\_test\_tracer\_end}, \hyperpage{155}
    \subitem {advection\_test\_tracer\_surface\_state}, \hyperpage{155}
    \subitem {initialize\_advection\_test\_tracer}, \hyperpage{156}
    \subitem {register\_advection\_test\_tracer}, \hyperpage{157}
  \item {advection\_test\_tracer::advection\_test\_tracer\_cs}, 
		\hyperpage{2958}
  \item {advection\_test\_tracer\_column\_physics}
    \subitem {advection\_test\_tracer}, \hyperpage{153}
  \item {advection\_test\_tracer\_end}
    \subitem {advection\_test\_tracer}, \hyperpage{155}
  \item {advection\_test\_tracer\_surface\_state}
    \subitem {advection\_test\_tracer}, \hyperpage{155}
  \item {ale\_build\_grid}
    \subitem {mom\_ale}, \hyperpage{398}
  \item {ale\_end}
    \subitem {mom\_ale}, \hyperpage{399}
  \item {ale\_getcoordinate}
    \subitem {mom\_ale}, \hyperpage{400}
  \item {ale\_getcoordinateunits}
    \subitem {mom\_ale}, \hyperpage{400}
  \item {ale\_init}
    \subitem {mom\_ale}, \hyperpage{400}
  \item {ale\_initregridding}
    \subitem {mom\_ale}, \hyperpage{402}
  \item {ale\_initthicknesstocoord}
    \subitem {mom\_ale}, \hyperpage{403}
  \item {ale\_main}
    \subitem {mom\_ale}, \hyperpage{403}
  \item {ale\_main\_offline}
    \subitem {mom\_ale}, \hyperpage{405}
  \item {ale\_offline\_inputs}
    \subitem {mom\_ale}, \hyperpage{406}
  \item {ale\_offline\_tracer\_final}
    \subitem {mom\_ale}, \hyperpage{408}
  \item {ale\_plm\_edge\_values}
    \subitem {mom\_ale}, \hyperpage{409}
  \item {ale\_register\_diags}
    \subitem {mom\_ale}, \hyperpage{410}
  \item {ale\_regrid\_accelerated}
    \subitem {mom\_ale}, \hyperpage{411}
  \item {ale\_remap\_init\_conds}
    \subitem {mom\_ale}, \hyperpage{413}
  \item {ale\_remap\_scalar}
    \subitem {mom\_ale}, \hyperpage{413}
  \item {ale\_sponge\_end}
    \subitem {mom\_ale\_sponge}, \hyperpage{424}
  \item {ale\_update\_regrid\_weights}
    \subitem {mom\_ale}, \hyperpage{415}
  \item {ale\_updateverticalgridtype}
    \subitem {mom\_ale}, \hyperpage{415}
  \item {ale\_writecoordinatefile}
    \subitem {mom\_ale}, \hyperpage{415}
  \item {align\_aniso\_tensor\_to\_grid}
    \subitem {mom\_hor\_visc}, \hyperpage{1523}
  \item {alloc\_bt\_cont\_type}
    \subitem {mom\_variables}, \hyperpage{2648}
  \item {alloc\_diag\_with\_id}
    \subitem {mom\_diag\_mediator}, \hyperpage{920}
  \item {allocate\_forcing\_by\_group}
    \subitem {mom\_forcing\_type}, \hyperpage{1399}
    \subitem {mom\_forcing\_type::allocate\_forcing\_type}, 
		\hyperpage{2966}
  \item {allocate\_forcing\_by\_ref}
    \subitem {mom\_forcing\_type}, \hyperpage{1401}
    \subitem {mom\_forcing\_type::allocate\_forcing\_type}, 
		\hyperpage{2967}
  \item {allocate\_mech\_forcing\_by\_group}
    \subitem {mom\_forcing\_type}, \hyperpage{1402}
    \subitem {mom\_forcing\_type::allocate\_mech\_forcing}, 
		\hyperpage{2969}
  \item {allocate\_mech\_forcing\_from\_ref}
    \subitem {mom\_forcing\_type}, \hyperpage{1403}
    \subitem {mom\_forcing\_type::allocate\_mech\_forcing}, 
		\hyperpage{2970}
  \item {allocate\_metrics}
    \subitem {mom\_grid}, \hyperpage{1486}
  \item {allocate\_obc\_segment\_data}
    \subitem {mom\_open\_boundary}, \hyperpage{2003}
  \item {allocate\_rotated\_array\_integer}
    \subitem {mom\_array\_transform}, \hyperpage{443}
    \subitem {mom\_array\_transform::allocate\_rotated\_array}, 
		\hyperpage{2971}
  \item {allocate\_rotated\_array\_real\_2d}
    \subitem {mom\_array\_transform}, \hyperpage{444}
    \subitem {mom\_array\_transform::allocate\_rotated\_array}, 
		\hyperpage{2971}
  \item {allocate\_rotated\_array\_real\_3d}
    \subitem {mom\_array\_transform}, \hyperpage{444}
    \subitem {mom\_array\_transform::allocate\_rotated\_array}, 
		\hyperpage{2972}
  \item {allocate\_rotated\_array\_real\_4d}
    \subitem {mom\_array\_transform}, \hyperpage{445}
    \subitem {mom\_array\_transform::allocate\_rotated\_array}, 
		\hyperpage{2972}
  \item {allocate\_surface\_state}
    \subitem {mom\_variables}, \hyperpage{2649}
  \item {analytic\_int\_density\_dz}
    \subitem {mom\_eos}, \hyperpage{1253}
  \item {analytic\_int\_specific\_vol\_dp}
    \subitem {mom\_eos}, \hyperpage{1255}
  \item {aof\_set\_coupler\_flux}
    \subitem {atmos\_ocean\_fluxes\_mod}, \hyperpage{159}
  \item {apply\_ale\_sponge}
    \subitem {mom\_ale\_sponge}, \hyperpage{424}
  \item {apply\_boundary\_values}
    \subitem {mom\_ice\_shelf\_dynamics}, \hyperpage{1597}
  \item {apply\_ctrl\_forcing}
    \subitem {mom\_controlled\_forcing}, \hyperpage{707}
  \item {apply\_oda\_tracer\_increments}
    \subitem {mom\_oda\_driver\_mod}, \hyperpage{1929}
  \item {apply\_sponge}
    \subitem {mom\_sponge}, \hyperpage{2362}
  \item {apply\_topography\_edits\_from\_file}
    \subitem {mom\_shared\_initialization}, \hyperpage{2331}
  \item {apply\_velocity\_obcs}
    \subitem {mom\_barotropic}, \hyperpage{455}
  \item {applyboundaryfluxesinout}
    \subitem {mom\_diabatic\_aux}, \hyperpage{834}
  \item {applytracerboundaryfluxesinout}
    \subitem {mom\_tracer\_diabatic}, \hyperpage{2563}
  \item {assert}
    \subitem {mom\_error\_handler}, \hyperpage{1342}
  \item {atmos\_ocean\_fluxes\_mod}, \hyperpage{159}
    \subitem {aof\_set\_coupler\_flux}, \hyperpage{159}
  \item {attach\_cell\_methods}
    \subitem {mom\_diag\_mediator}, \hyperpage{921}
  \item {average\_discontinuous\_edge\_values}
    \subitem {regrid\_edge\_values}, \hyperpage{2848}
  \item {average\_value\_ppoly}
    \subitem {mom\_remapping}, \hyperpage{2190}
  \item {avg\_sss}
    \subitem {mom\_controlled\_forcing::ctrl\_forcing\_cs}, 
		\hyperpage{3119}
  \item {avg\_sss\_anom}
    \subitem {mom\_controlled\_forcing::ctrl\_forcing\_cs}, 
		\hyperpage{3119}
  \item {avg\_sst\_anom}
    \subitem {mom\_controlled\_forcing::ctrl\_forcing\_cs}, 
		\hyperpage{3119}
  \item {avg\_time}
    \subitem {mom\_controlled\_forcing::ctrl\_forcing\_cs}, 
		\hyperpage{3119}

  \indexspace

  \item {baroclinic\_zone\_init\_temperature\_salinity}
    \subitem {baroclinic\_zone\_initialization}, \hyperpage{161}
  \item {baroclinic\_zone\_initialization}, \hyperpage{160}
    \subitem {baroclinic\_zone\_init\_temperature\_salinity}, 
		\hyperpage{161}
    \subitem {bcz\_params}, \hyperpage{162}
  \item {barotropic\_end}
    \subitem {mom\_barotropic}, \hyperpage{460}
  \item {barotropic\_get\_tav}
    \subitem {mom\_barotropic}, \hyperpage{460}
  \item {barotropic\_init}
    \subitem {mom\_barotropic}, \hyperpage{461}
  \item {basin\_builder}, \hyperpage{163}
    \subitem {basin\_builder\_topography}, \hyperpage{164}
    \subitem {circ\_conic\_ridge}, \hyperpage{166}
    \subitem {circ\_scurve\_ridge}, \hyperpage{167}
    \subitem {cone}, \hyperpage{167}
    \subitem {cstprof}, \hyperpage{168}
    \subitem {dist\_line\_fixed\_x}, \hyperpage{168}
    \subitem {dist\_line\_fixed\_y}, \hyperpage{169}
    \subitem {ew\_coast}, \hyperpage{169}
    \subitem {ns\_coast}, \hyperpage{170}
    \subitem {ns\_conic\_ridge}, \hyperpage{171}
    \subitem {ns\_scurve\_ridge}, \hyperpage{171}
    \subitem {scurve}, \hyperpage{172}
  \item {basin\_builder\_topography}
    \subitem {basin\_builder}, \hyperpage{164}
  \item {bcz\_params}
    \subitem {baroclinic\_zone\_initialization}, \hyperpage{162}
  \item {benchmark\_init\_temperature\_salinity}
    \subitem {benchmark\_initialization}, \hyperpage{173}
  \item {benchmark\_initialization}, \hyperpage{172}
    \subitem {benchmark\_init\_temperature\_salinity}, \hyperpage{173}
    \subitem {benchmark\_initialize\_thickness}, \hyperpage{174}
    \subitem {benchmark\_initialize\_topography}, \hyperpage{176}
  \item {benchmark\_initialize\_thickness}
    \subitem {benchmark\_initialization}, \hyperpage{174}
  \item {benchmark\_initialize\_topography}
    \subitem {benchmark\_initialization}, \hyperpage{176}
  \item {bfb\_buoyancy\_forcing}
    \subitem {bfb\_surface\_forcing}, \hyperpage{181}
  \item {bfb\_initialization}, \hyperpage{177}
    \subitem {bfb\_initialize\_sponges\_southonly}, \hyperpage{178}
    \subitem {bfb\_set\_coord}, \hyperpage{179}
    \subitem {first\_call}, \hyperpage{181}
    \subitem {write\_bfb\_log}, \hyperpage{180}
  \item {bfb\_initialize\_sponges\_southonly}
    \subitem {bfb\_initialization}, \hyperpage{178}
  \item {bfb\_set\_coord}
    \subitem {bfb\_initialization}, \hyperpage{179}
  \item {bfb\_surface\_forcing}, \hyperpage{181}
    \subitem {bfb\_buoyancy\_forcing}, \hyperpage{181}
    \subitem {bfb\_surface\_forcing\_init}, \hyperpage{183}
  \item {bfb\_surface\_forcing::bfb\_surface\_forcing\_cs}, 
		\hyperpage{2995}
  \item {bfb\_surface\_forcing\_init}
    \subitem {bfb\_surface\_forcing}, \hyperpage{183}
  \item {bilinear\_shape\_fn\_grid}
    \subitem {mom\_ice\_shelf\_dynamics}, \hyperpage{1599}
  \item {bilinear\_shape\_functions}
    \subitem {mom\_ice\_shelf\_dynamics}, \hyperpage{1600}
  \item {bilinear\_shape\_functions\_subgrid}
    \subitem {mom\_ice\_shelf\_dynamics}, \hyperpage{1602}
  \item {bitcount}
    \subitem {mom\_checksums}, \hyperpage{602}
  \item {bkgnd\_mixing\_end}
    \subitem {mom\_bkgnd\_mixing}, \hyperpage{525}
  \item {bkgnd\_mixing\_init}
    \subitem {mom\_bkgnd\_mixing}, \hyperpage{526}
  \item {bound\_edge\_values}
    \subitem {regrid\_edge\_values}, \hyperpage{2849}
  \item {boundary\_impulse\_stock}
    \subitem {boundary\_impulse\_tracer}, \hyperpage{186}
  \item {boundary\_impulse\_tracer}, \hyperpage{185}
    \subitem {boundary\_impulse\_stock}, \hyperpage{186}
    \subitem {boundary\_impulse\_tracer\_column\_physics}, 
		\hyperpage{187}
    \subitem {boundary\_impulse\_tracer\_end}, \hyperpage{189}
    \subitem {boundary\_impulse\_tracer\_surface\_state}, 
		\hyperpage{189}
    \subitem {initialize\_boundary\_impulse\_tracer}, \hyperpage{190}
    \subitem {register\_boundary\_impulse\_tracer}, \hyperpage{191}
  \item {boundary\_impulse\_tracer::boundary\_impulse\_tracer\_cs}, 
		\hyperpage{2999}
  \item {boundary\_impulse\_tracer\_column\_physics}
    \subitem {boundary\_impulse\_tracer}, \hyperpage{187}
  \item {boundary\_impulse\_tracer\_end}
    \subitem {boundary\_impulse\_tracer}, \hyperpage{189}
  \item {boundary\_impulse\_tracer\_surface\_state}
    \subitem {boundary\_impulse\_tracer}, \hyperpage{189}
  \item {boundary\_k\_range}
    \subitem {mom\_lateral\_boundary\_diffusion}, \hyperpage{1770}
  \item {bt\_cont\_to\_face\_areas}
    \subitem {mom\_barotropic}, \hyperpage{470}
  \item {bt\_mass\_source}
    \subitem {mom\_barotropic}, \hyperpage{471}
  \item {btcalc}
    \subitem {mom\_barotropic}, \hyperpage{473}
  \item {btstep}
    \subitem {mom\_barotropic}, \hyperpage{477}
  \item {build\_adapt\_column}
    \subitem {coord\_adapt}, \hyperpage{195}
  \item {build\_and\_interpolate\_grid}
    \subitem {regrid\_interp}, \hyperpage{2871}
  \item {build\_cubic\_interpolant}
    \subitem {p3m\_functions}, \hyperpage{2786}
  \item {build\_grid\_adaptive}
    \subitem {mom\_regridding}, \hyperpage{2135}
  \item {build\_grid\_arbitrary}
    \subitem {mom\_regridding}, \hyperpage{2136}
  \item {build\_grid\_hycom1}
    \subitem {mom\_regridding}, \hyperpage{2137}
  \item {build\_grid\_slight}
    \subitem {mom\_regridding}, \hyperpage{2139}
  \item {build\_hycom1\_column}
    \subitem {coord\_hycom}, \hyperpage{200}
  \item {build\_reconstructions\_1d}
    \subitem {mom\_remapping}, \hyperpage{2192}
  \item {build\_rho\_column}
    \subitem {coord\_rho}, \hyperpage{204}
  \item {build\_rho\_column\_iteratively}
    \subitem {coord\_rho}, \hyperpage{206}
  \item {build\_rho\_grid}
    \subitem {mom\_regridding}, \hyperpage{2140}
  \item {build\_sigma\_column}
    \subitem {coord\_sigma}, \hyperpage{212}
  \item {build\_sigma\_grid}
    \subitem {mom\_regridding}, \hyperpage{2142}
  \item {build\_slight\_column}
    \subitem {coord\_slight}, \hyperpage{214}
  \item {build\_zstar\_column}
    \subitem {coord\_zlike}, \hyperpage{226}
  \item {build\_zstar\_grid}
    \subitem {mom\_regridding}, \hyperpage{2144}
  \item {buildgridfromh}
    \subitem {mom\_remapping}, \hyperpage{2194}
  \item {bulk\_average}
    \subitem {mom\_lateral\_boundary\_diffusion}, \hyperpage{1772}
  \item {bulkmixedlayer}
    \subitem {mom\_bulk\_mixed\_layer}, \hyperpage{537}
  \item {bulkmixedlayer\_init}
    \subitem {mom\_bulk\_mixed\_layer}, \hyperpage{546}
  \item {buoyancy\_forcing\_const}
    \subitem {mom\_surface\_forcing}, \hyperpage{2447}
  \item {buoyancy\_forcing\_from\_data\_override}
    \subitem {mom\_surface\_forcing}, \hyperpage{2448}
  \item {buoyancy\_forcing\_from\_files}
    \subitem {mom\_surface\_forcing}, \hyperpage{2451}
  \item {buoyancy\_forcing\_linear}
    \subitem {mom\_surface\_forcing}, \hyperpage{2454}
  \item {buoyancy\_forcing\_zero}
    \subitem {mom\_surface\_forcing}, \hyperpage{2456}

  \indexspace

  \item {calc\_delta\_rho\_and\_derivs}
    \subitem {mom\_neutral\_diffusion}, \hyperpage{1858}
  \item {calc\_depth\_function}
    \subitem {mom\_lateral\_mixing\_coeffs}, \hyperpage{1792}
  \item {calc\_h\_new\_by\_dz}
    \subitem {mom\_regridding}, \hyperpage{2145}
  \item {calc\_isoneutral\_slopes}
    \subitem {mom\_isopycnal\_slopes}, \hyperpage{1731}
  \item {calc\_kappa\_shear\_vertex}
    \subitem {mom\_kappa\_shear}, \hyperpage{1739}
  \item {calc\_qg\_leith\_viscosity}
    \subitem {mom\_lateral\_mixing\_coeffs}, \hyperpage{1793}
  \item {calc\_resoln\_function}
    \subitem {mom\_lateral\_mixing\_coeffs}, \hyperpage{1795}
  \item {calc\_shelf\_driving\_stress}
    \subitem {mom\_ice\_shelf\_dynamics}, \hyperpage{1602}
  \item {calc\_shelf\_visc}
    \subitem {mom\_ice\_shelf\_dynamics}, \hyperpage{1605}
  \item {calc\_slope\_functions}
    \subitem {mom\_lateral\_mixing\_coeffs}, \hyperpage{1799}
  \item {calc\_slope\_functions\_using\_just\_e}
    \subitem {mom\_lateral\_mixing\_coeffs}, \hyperpage{1800}
  \item {calc\_spec\_vol\_1d}
    \subitem {mom\_eos}, \hyperpage{1257}
    \subitem {mom\_eos::calculate\_spec\_vol}, \hyperpage{3056}
  \item {calc\_spec\_vol\_derivs\_1d}
    \subitem {mom\_eos}, \hyperpage{1258}
    \subitem {mom\_eos::calculate\_specific\_vol\_derivs}, 
		\hyperpage{3068}
  \item {calc\_spec\_vol\_scalar}
    \subitem {mom\_eos}, \hyperpage{1259}
    \subitem {mom\_eos::calculate\_spec\_vol}, \hyperpage{3057}
  \item {calc\_tidal\_forcing}
    \subitem {mom\_tidal\_forcing}, \hyperpage{2512}
  \item {calc\_visbeck\_coeffs}
    \subitem {mom\_lateral\_mixing\_coeffs}, \hyperpage{1802}
  \item {calculate\_bkgnd\_mixing}
    \subitem {mom\_bkgnd\_mixing}, \hyperpage{528}
  \item {calculate\_compress\_array}
    \subitem {mom\_eos}, \hyperpage{1260}
    \subitem {mom\_eos::calculate\_compress}, \hyperpage{3010}
  \item {calculate\_compress\_linear}
    \subitem {mom\_eos\_linear}, \hyperpage{1288}
  \item {calculate\_compress\_nemo}
    \subitem {mom\_eos\_nemo}, \hyperpage{1304}
  \item {calculate\_compress\_scalar}
    \subitem {mom\_eos}, \hyperpage{1261}
    \subitem {mom\_eos::calculate\_compress}, \hyperpage{3011}
  \item {calculate\_compress\_teos10}
    \subitem {mom\_eos\_teos10}, \hyperpage{1310}
  \item {calculate\_compress\_unesco}
    \subitem {mom\_eos\_unesco}, \hyperpage{1319}
  \item {calculate\_compress\_wright}
    \subitem {mom\_eos\_wright}, \hyperpage{1326}
  \item {calculate\_cvmix\_conv}
    \subitem {mom\_cvmix\_conv}, \hyperpage{744}
  \item {calculate\_cvmix\_shear}
    \subitem {mom\_cvmix\_shear}, \hyperpage{777}
  \item {calculate\_cvmix\_tidal}
    \subitem {mom\_tidal\_mixing}, \hyperpage{2527}
  \item {calculate\_density\_1d}
    \subitem {mom\_eos}, \hyperpage{1262}
    \subitem {mom\_eos::calculate\_density}, \hyperpage{3012}
  \item {calculate\_density\_array}
    \subitem {mom\_eos}, \hyperpage{1263}
    \subitem {mom\_eos::calculate\_density}, \hyperpage{3014}
  \item {calculate\_density\_array\_linear}
    \subitem {mom\_eos\_linear}, \hyperpage{1289}
    \subitem {mom\_eos\_linear::calculate\_density\_linear}, 
		\hyperpage{3033}
  \item {calculate\_density\_array\_nemo}
    \subitem {mom\_eos\_nemo}, \hyperpage{1305}
    \subitem {mom\_eos\_nemo::calculate\_density\_nemo}, 
		\hyperpage{3035}
  \item {calculate\_density\_array\_teos10}
    \subitem {mom\_eos\_teos10}, \hyperpage{1311}
    \subitem {mom\_eos\_teos10::calculate\_density\_teos10}, 
		\hyperpage{3049}
  \item {calculate\_density\_array\_unesco}
    \subitem {mom\_eos\_unesco}, \hyperpage{1320}
    \subitem {mom\_eos\_unesco::calculate\_density\_unesco}, 
		\hyperpage{3051}
  \item {calculate\_density\_array\_wright}
    \subitem {mom\_eos\_wright}, \hyperpage{1327}
    \subitem {mom\_eos\_wright::calculate\_density\_wright}, 
		\hyperpage{3054}
  \item {calculate\_density\_derivs\_1d}
    \subitem {mom\_eos}, \hyperpage{1264}
    \subitem {mom\_eos::calculate\_density\_derivs}, \hyperpage{3020}
  \item {calculate\_density\_derivs\_array}
    \subitem {mom\_eos}, \hyperpage{1265}
    \subitem {mom\_eos::calculate\_density\_derivs}, \hyperpage{3021}
  \item {calculate\_density\_derivs\_array\_linear}
    \subitem {mom\_eos\_linear}, \hyperpage{1290}
    \subitem {mom\_eos\_linear::calculate\_density\_derivs\_linear}, 
		\hyperpage{3024}
  \item {calculate\_density\_derivs\_array\_nemo}
    \subitem {mom\_eos\_nemo}, \hyperpage{1306}
    \subitem {mom\_eos\_nemo::calculate\_density\_derivs\_nemo}, 
		\hyperpage{3026}
  \item {calculate\_density\_derivs\_array\_teos10}
    \subitem {mom\_eos\_teos10}, \hyperpage{1312}
    \subitem {mom\_eos\_teos10::calculate\_density\_derivs\_teos10}, 
		\hyperpage{3029}
  \item {calculate\_density\_derivs\_array\_wright}
    \subitem {mom\_eos\_wright}, \hyperpage{1328}
    \subitem {mom\_eos\_wright::calculate\_density\_derivs\_wright}, 
		\hyperpage{3031}
  \item {calculate\_density\_derivs\_scalar}
    \subitem {mom\_eos}, \hyperpage{1267}
    \subitem {mom\_eos::calculate\_density\_derivs}, \hyperpage{3023}
  \item {calculate\_density\_derivs\_scalar\_linear}
    \subitem {mom\_eos\_linear}, \hyperpage{1291}
    \subitem {mom\_eos\_linear::calculate\_density\_derivs\_linear}, 
		\hyperpage{3025}
  \item {calculate\_density\_derivs\_scalar\_nemo}
    \subitem {mom\_eos\_nemo}, \hyperpage{1307}
    \subitem {mom\_eos\_nemo::calculate\_density\_derivs\_nemo}, 
		\hyperpage{3028}
  \item {calculate\_density\_derivs\_scalar\_teos10}
    \subitem {mom\_eos\_teos10}, \hyperpage{1312}
    \subitem {mom\_eos\_teos10::calculate\_density\_derivs\_teos10}, 
		\hyperpage{3030}
  \item {calculate\_density\_derivs\_scalar\_wright}
    \subitem {mom\_eos\_wright}, \hyperpage{1328}
    \subitem {mom\_eos\_wright::calculate\_density\_derivs\_wright}, 
		\hyperpage{3032}
  \item {calculate\_density\_derivs\_unesco}
    \subitem {mom\_eos\_unesco}, \hyperpage{1321}
  \item {calculate\_density\_scalar}
    \subitem {mom\_eos}, \hyperpage{1268}
    \subitem {mom\_eos::calculate\_density}, \hyperpage{3015}
  \item {calculate\_density\_scalar\_linear}
    \subitem {mom\_eos\_linear}, \hyperpage{1292}
    \subitem {mom\_eos\_linear::calculate\_density\_linear}, 
		\hyperpage{3034}
  \item {calculate\_density\_scalar\_nemo}
    \subitem {mom\_eos\_nemo}, \hyperpage{1308}
    \subitem {mom\_eos\_nemo::calculate\_density\_nemo}, 
		\hyperpage{3037}
  \item {calculate\_density\_scalar\_teos10}
    \subitem {mom\_eos\_teos10}, \hyperpage{1313}
    \subitem {mom\_eos\_teos10::calculate\_density\_teos10}, 
		\hyperpage{3050}
  \item {calculate\_density\_scalar\_unesco}
    \subitem {mom\_eos\_unesco}, \hyperpage{1322}
    \subitem {mom\_eos\_unesco::calculate\_density\_unesco}, 
		\hyperpage{3052}
  \item {calculate\_density\_scalar\_wright}
    \subitem {mom\_eos\_wright}, \hyperpage{1329}
    \subitem {mom\_eos\_wright::calculate\_density\_wright}, 
		\hyperpage{3054}
  \item {calculate\_density\_second\_derivs\_array}
    \subitem {mom\_eos}, \hyperpage{1269}
    \subitem {mom\_eos::calculate\_density\_second\_derivs}, 
		\hyperpage{3038}
  \item {calculate\_density\_second\_derivs\_array\_linear}
    \subitem {mom\_eos\_linear}, \hyperpage{1292}
    \subitem {mom\_eos\_linear::calculate\_density\_second\_derivs\_linear}, 
		\hyperpage{3042}
  \item {calculate\_density\_second\_derivs\_array\_teos10}
    \subitem {mom\_eos\_teos10}, \hyperpage{1314}
    \subitem {mom\_eos\_teos10::calculate\_density\_second\_derivs\_teos10}, 
		\hyperpage{3044}
  \item {calculate\_density\_second\_derivs\_array\_wright}
    \subitem {mom\_eos\_wright}, \hyperpage{1330}
    \subitem {mom\_eos\_wright::calculate\_density\_second\_derivs\_wright}, 
		\hyperpage{3046}
  \item {calculate\_density\_second\_derivs\_scalar}
    \subitem {mom\_eos}, \hyperpage{1270}
    \subitem {mom\_eos::calculate\_density\_second\_derivs}, 
		\hyperpage{3040}
  \item {calculate\_density\_second\_derivs\_scalar\_linear}
    \subitem {mom\_eos\_linear}, \hyperpage{1293}
    \subitem {mom\_eos\_linear::calculate\_density\_second\_derivs\_linear}, 
		\hyperpage{3043}
  \item {calculate\_density\_second\_derivs\_scalar\_teos10}
    \subitem {mom\_eos\_teos10}, \hyperpage{1315}
    \subitem {mom\_eos\_teos10::calculate\_density\_second\_derivs\_teos10}, 
		\hyperpage{3045}
  \item {calculate\_density\_second\_derivs\_scalar\_wright}
    \subitem {mom\_eos\_wright}, \hyperpage{1331}
    \subitem {mom\_eos\_wright::calculate\_density\_second\_derivs\_wright}, 
		\hyperpage{3048}
  \item {calculate\_derivs}
    \subitem {mom\_diagnostics}, \hyperpage{1016}
  \item {calculate\_diagnostic\_fields}
    \subitem {mom\_diagnostics}, \hyperpage{1016}
  \item {calculate\_energy\_diagnostics}
    \subitem {mom\_diagnostics}, \hyperpage{1024}
  \item {calculate\_kappa\_shear}
    \subitem {mom\_kappa\_shear}, \hyperpage{1743}
  \item {calculate\_projected\_state}
    \subitem {mom\_kappa\_shear}, \hyperpage{1747}
  \item {calculate\_spec\_vol\_array}
    \subitem {mom\_eos}, \hyperpage{1272}
    \subitem {mom\_eos::calculate\_spec\_vol}, \hyperpage{3058}
  \item {calculate\_spec\_vol\_array\_linear}
    \subitem {mom\_eos\_linear}, \hyperpage{1294}
    \subitem {mom\_eos\_linear::calculate\_spec\_vol\_linear}, 
		\hyperpage{3060}
  \item {calculate\_spec\_vol\_array\_teos10}
    \subitem {mom\_eos\_teos10}, \hyperpage{1315}
    \subitem {mom\_eos\_teos10::calculate\_spec\_vol\_teos10}, 
		\hyperpage{3062}
  \item {calculate\_spec\_vol\_array\_unesco}
    \subitem {mom\_eos\_unesco}, \hyperpage{1323}
    \subitem {mom\_eos\_unesco::calculate\_spec\_vol\_unesco}, 
		\hyperpage{3064}
  \item {calculate\_spec\_vol\_array\_wright}
    \subitem {mom\_eos\_wright}, \hyperpage{1332}
    \subitem {mom\_eos\_wright::calculate\_spec\_vol\_wright}, 
		\hyperpage{3066}
  \item {calculate\_spec\_vol\_derivs\_array}
    \subitem {mom\_eos}, \hyperpage{1273}
    \subitem {mom\_eos::calculate\_specific\_vol\_derivs}, 
		\hyperpage{3069}
  \item {calculate\_spec\_vol\_scalar\_linear}
    \subitem {mom\_eos\_linear}, \hyperpage{1295}
    \subitem {mom\_eos\_linear::calculate\_spec\_vol\_linear}, 
		\hyperpage{3060}
  \item {calculate\_spec\_vol\_scalar\_teos10}
    \subitem {mom\_eos\_teos10}, \hyperpage{1316}
    \subitem {mom\_eos\_teos10::calculate\_spec\_vol\_teos10}, 
		\hyperpage{3063}
  \item {calculate\_spec\_vol\_scalar\_unesco}
    \subitem {mom\_eos\_unesco}, \hyperpage{1324}
    \subitem {mom\_eos\_unesco::calculate\_spec\_vol\_unesco}, 
		\hyperpage{3065}
  \item {calculate\_spec\_vol\_scalar\_wright}
    \subitem {mom\_eos\_wright}, \hyperpage{1333}
    \subitem {mom\_eos\_wright::calculate\_spec\_vol\_wright}, 
		\hyperpage{3067}
  \item {calculate\_specvol\_derivs\_linear}
    \subitem {mom\_eos\_linear}, \hyperpage{1296}
  \item {calculate\_specvol\_derivs\_teos10}
    \subitem {mom\_eos\_teos10}, \hyperpage{1317}
  \item {calculate\_specvol\_derivs\_wright}
    \subitem {mom\_eos\_wright}, \hyperpage{1333}
  \item {calculate\_stanley\_density\_1d}
    \subitem {mom\_eos}, \hyperpage{1274}
    \subitem {mom\_eos::calculate\_density}, \hyperpage{3016}
  \item {calculate\_stanley\_density\_array}
    \subitem {mom\_eos}, \hyperpage{1275}
    \subitem {mom\_eos::calculate\_density}, \hyperpage{3017}
  \item {calculate\_stanley\_density\_scalar}
    \subitem {mom\_eos}, \hyperpage{1277}
    \subitem {mom\_eos::calculate\_density}, \hyperpage{3019}
  \item {calculate\_tfreeze\_array}
    \subitem {mom\_eos}, \hyperpage{1278}
    \subitem {mom\_eos::calculate\_tfreeze}, \hyperpage{3071}
  \item {calculate\_tfreeze\_linear\_array}
    \subitem {mom\_tfreeze}, \hyperpage{2477}
    \subitem {mom\_tfreeze::calculate\_tfreeze\_linear}, 
		\hyperpage{3073}
  \item {calculate\_tfreeze\_linear\_scalar}
    \subitem {mom\_tfreeze}, \hyperpage{2477}
    \subitem {mom\_tfreeze::calculate\_tfreeze\_linear}, 
		\hyperpage{3074}
  \item {calculate\_tfreeze\_millero\_array}
    \subitem {mom\_tfreeze}, \hyperpage{2478}
    \subitem {mom\_tfreeze::calculate\_tfreeze\_millero}, 
		\hyperpage{3075}
  \item {calculate\_tfreeze\_millero\_scalar}
    \subitem {mom\_tfreeze}, \hyperpage{2479}
    \subitem {mom\_tfreeze::calculate\_tfreeze\_millero}, 
		\hyperpage{3076}
  \item {calculate\_tfreeze\_scalar}
    \subitem {mom\_eos}, \hyperpage{1279}
    \subitem {mom\_eos::calculate\_tfreeze}, \hyperpage{3072}
  \item {calculate\_tfreeze\_teos10\_array}
    \subitem {mom\_tfreeze}, \hyperpage{2479}
    \subitem {mom\_tfreeze::calculate\_tfreeze\_teos10}, 
		\hyperpage{3077}
  \item {calculate\_tfreeze\_teos10\_scalar}
    \subitem {mom\_tfreeze}, \hyperpage{2480}
    \subitem {mom\_tfreeze::calculate\_tfreeze\_teos10}, 
		\hyperpage{3078}
  \item {calculate\_tidal\_mixing}
    \subitem {mom\_tidal\_mixing}, \hyperpage{2531}
  \item {calculate\_vertical\_integrals}
    \subitem {mom\_diagnostics}, \hyperpage{1027}
  \item {calculatebuoyancyflux1d}
    \subitem {mom\_forcing\_type}, \hyperpage{1403}
  \item {calculatebuoyancyflux2d}
    \subitem {mom\_forcing\_type}, \hyperpage{1405}
  \item {call\_obc\_register}
    \subitem {mom\_boundary\_update}, \hyperpage{533}
  \item {call\_tracer\_column\_fns}
    \subitem {mom\_tracer\_flow\_control}, \hyperpage{2571}
  \item {call\_tracer\_flux\_init}
    \subitem {mom\_tracer\_flow\_control}, \hyperpage{2574}
  \item {call\_tracer\_register}
    \subitem {mom\_tracer\_flow\_control}, \hyperpage{2574}
  \item {call\_tracer\_set\_forcing}
    \subitem {mom\_tracer\_flow\_control}, \hyperpage{2576}
  \item {call\_tracer\_stocks}
    \subitem {mom\_tracer\_flow\_control}, \hyperpage{2577}
  \item {call\_tracer\_surface\_state}
    \subitem {mom\_tracer\_flow\_control}, \hyperpage{2579}
  \item {calltree\_enter}
    \subitem {mom\_error\_handler}, \hyperpage{1343}
  \item {calltree\_leave}
    \subitem {mom\_error\_handler}, \hyperpage{1343}
  \item {calltree\_waypoint}
    \subitem {mom\_error\_handler}, \hyperpage{1343}
  \item {calve\_to\_mask}
    \subitem {mom\_ice\_shelf\_dynamics}, \hyperpage{1606}
  \item {carry\_overflow}
    \subitem {mom\_coms}, \hyperpage{643}
  \item {cg\_action}
    \subitem {mom\_ice\_shelf\_dynamics}, \hyperpage{1607}
  \item {cg\_action\_subgrid\_basal}
    \subitem {mom\_ice\_shelf\_dynamics}, \hyperpage{1610}
  \item {cg\_diagonal\_subgrid\_basal}
    \subitem {mom\_ice\_shelf\_dynamics}, \hyperpage{1611}
  \item {change\_thickness\_using\_melt}
    \subitem {mom\_ice\_shelf}, \hyperpage{1575}
  \item {check\_bkgnd\_scheme}
    \subitem {mom\_bkgnd\_mixing}, \hyperpage{532}
  \item {check\_column\_integral}
    \subitem {mom\_debugging}, \hyperpage{784}
  \item {check\_column\_integrals}
    \subitem {mom\_debugging}, \hyperpage{784}
  \item {check\_discontinuous\_edge\_values}
    \subitem {regrid\_edge\_values}, \hyperpage{2850}
  \item {check\_grid}
    \subitem {mom\_ale}, \hyperpage{416}
  \item {check\_grid\_column}
    \subitem {mom\_regridding}, \hyperpage{2146}
  \item {check\_grid\_def}
    \subitem {mom\_regridding}, \hyperpage{2147}
  \item {check\_reconstructions\_1d}
    \subitem {mom\_remapping}, \hyperpage{2194}
  \item {check\_redundant\_sb2d}
    \subitem {mom\_debugging}, \hyperpage{785}
    \subitem {mom\_debugging::check\_redundant\_b}, \hyperpage{3082}
  \item {check\_redundant\_sb3d}
    \subitem {mom\_debugging}, \hyperpage{786}
    \subitem {mom\_debugging::check\_redundant\_b}, \hyperpage{3083}
  \item {check\_redundant\_st2d}
    \subitem {mom\_debugging}, \hyperpage{787}
    \subitem {mom\_debugging::check\_redundant\_t}, \hyperpage{3089}
  \item {check\_redundant\_st3d}
    \subitem {mom\_debugging}, \hyperpage{788}
    \subitem {mom\_debugging::check\_redundant\_t}, \hyperpage{3090}
  \item {check\_redundant\_vb2d}
    \subitem {mom\_debugging}, \hyperpage{789}
    \subitem {mom\_debugging::check\_redundant\_b}, \hyperpage{3083}
  \item {check\_redundant\_vb3d}
    \subitem {mom\_debugging}, \hyperpage{790}
    \subitem {mom\_debugging::check\_redundant\_b}, \hyperpage{3085}
  \item {check\_redundant\_vc2d}
    \subitem {mom\_debugging}, \hyperpage{791}
    \subitem {mom\_debugging::check\_redundant}, \hyperpage{3079}
    \subitem {mom\_debugging::check\_redundant\_c}, \hyperpage{3086}
  \item {check\_redundant\_vc3d}
    \subitem {mom\_debugging}, \hyperpage{793}
    \subitem {mom\_debugging::check\_redundant}, \hyperpage{3080}
    \subitem {mom\_debugging::check\_redundant\_c}, \hyperpage{3088}
  \item {check\_redundant\_vt2d}
    \subitem {mom\_debugging}, \hyperpage{794}
    \subitem {mom\_debugging::check\_redundant\_t}, \hyperpage{3091}
  \item {check\_redundant\_vt3d}
    \subitem {mom\_debugging}, \hyperpage{795}
    \subitem {mom\_debugging::check\_redundant\_t}, \hyperpage{3092}
  \item {check\_remapping\_grid}
    \subitem {mom\_regridding}, \hyperpage{2148}
  \item {chk\_sum\_msg1}
    \subitem {mom\_checksums}, \hyperpage{602}
    \subitem {mom\_checksums::chk\_sum\_msg}, \hyperpage{3094}
  \item {chk\_sum\_msg2}
    \subitem {mom\_checksums}, \hyperpage{603}
    \subitem {mom\_checksums::chk\_sum\_msg}, \hyperpage{3094}
  \item {chk\_sum\_msg3}
    \subitem {mom\_checksums}, \hyperpage{603}
    \subitem {mom\_checksums::chk\_sum\_msg}, \hyperpage{3095}
  \item {chk\_sum\_msg5}
    \subitem {mom\_checksums}, \hyperpage{604}
    \subitem {mom\_checksums::chk\_sum\_msg}, \hyperpage{3095}
  \item {chk\_sum\_msg\_nsew}
    \subitem {mom\_checksums}, \hyperpage{605}
  \item {chk\_sum\_msg\_s}
    \subitem {mom\_checksums}, \hyperpage{605}
  \item {chk\_sum\_msg\_w}
    \subitem {mom\_checksums}, \hyperpage{606}
  \item {chksum0}
    \subitem {mom\_checksums}, \hyperpage{606}
  \item {chksum1d}
    \subitem {mom\_checksums}, \hyperpage{607}
    \subitem {mom\_checksums::chksum}, \hyperpage{3096}
  \item {chksum2d}
    \subitem {mom\_checksums}, \hyperpage{608}
    \subitem {mom\_checksums::chksum}, \hyperpage{3097}
  \item {chksum3d}
    \subitem {mom\_checksums}, \hyperpage{609}
    \subitem {mom\_checksums::chksum}, \hyperpage{3098}
  \item {chksum\_b\_2d}
    \subitem {mom\_checksums}, \hyperpage{609}
    \subitem {mom\_checksums::bchksum}, \hyperpage{2986}
    \subitem {mom\_checksums::qchksum}, \hyperpage{3493}
  \item {chksum\_b\_3d}
    \subitem {mom\_checksums}, \hyperpage{612}
    \subitem {mom\_checksums::bchksum}, \hyperpage{2989}
    \subitem {mom\_checksums::qchksum}, \hyperpage{3496}
  \item {chksum\_error}
    \subitem {mom\_checksums}, \hyperpage{614}
  \item {chksum\_h\_2d}
    \subitem {mom\_checksums}, \hyperpage{615}
    \subitem {mom\_checksums::hchksum}, \hyperpage{3256}
  \item {chksum\_h\_3d}
    \subitem {mom\_checksums}, \hyperpage{617}
    \subitem {mom\_checksums::hchksum}, \hyperpage{3258}
  \item {chksum\_pair\_b\_2d}
    \subitem {mom\_checksums}, \hyperpage{619}
    \subitem {mom\_checksums::bchksum\_pair}, \hyperpage{2992}
  \item {chksum\_pair\_b\_3d}
    \subitem {mom\_checksums}, \hyperpage{620}
    \subitem {mom\_checksums::bchksum\_pair}, \hyperpage{2993}
  \item {chksum\_pair\_h\_2d}
    \subitem {mom\_checksums}, \hyperpage{622}
    \subitem {mom\_checksums::hchksum\_pair}, \hyperpage{3261}
  \item {chksum\_pair\_h\_3d}
    \subitem {mom\_checksums}, \hyperpage{623}
    \subitem {mom\_checksums::hchksum\_pair}, \hyperpage{3262}
  \item {chksum\_u\_2d}
    \subitem {mom\_checksums}, \hyperpage{624}
    \subitem {mom\_checksums::uchksum}, \hyperpage{3627}
  \item {chksum\_u\_3d}
    \subitem {mom\_checksums}, \hyperpage{627}
    \subitem {mom\_checksums::uchksum}, \hyperpage{3630}
  \item {chksum\_uv\_2d}
    \subitem {mom\_checksums}, \hyperpage{629}
    \subitem {mom\_checksums::uvchksum}, \hyperpage{3643}
  \item {chksum\_uv\_3d}
    \subitem {mom\_checksums}, \hyperpage{631}
    \subitem {mom\_checksums::uvchksum}, \hyperpage{3645}
  \item {chksum\_v\_2d}
    \subitem {mom\_checksums}, \hyperpage{632}
    \subitem {mom\_checksums::vchksum}, \hyperpage{3652}
  \item {chksum\_v\_3d}
    \subitem {mom\_checksums}, \hyperpage{635}
    \subitem {mom\_checksums::vchksum}, \hyperpage{3655}
  \item {chksum\_vec\_a2d}
    \subitem {mom\_debugging}, \hyperpage{796}
    \subitem {mom\_debugging::vec\_chksum\_a}, \hyperpage{3660}
  \item {chksum\_vec\_a3d}
    \subitem {mom\_debugging}, \hyperpage{797}
    \subitem {mom\_debugging::vec\_chksum\_a}, \hyperpage{3660}
  \item {chksum\_vec\_b2d}
    \subitem {mom\_debugging}, \hyperpage{797}
    \subitem {mom\_debugging::vec\_chksum\_b}, \hyperpage{3662}
  \item {chksum\_vec\_b3d}
    \subitem {mom\_debugging}, \hyperpage{798}
    \subitem {mom\_debugging::vec\_chksum\_b}, \hyperpage{3662}
  \item {chksum\_vec\_c2d}
    \subitem {mom\_debugging}, \hyperpage{799}
    \subitem {mom\_debugging::vec\_chksum}, \hyperpage{3658}
    \subitem {mom\_debugging::vec\_chksum\_c}, \hyperpage{3663}
  \item {chksum\_vec\_c3d}
    \subitem {mom\_debugging}, \hyperpage{800}
    \subitem {mom\_debugging::vec\_chksum}, \hyperpage{3658}
    \subitem {mom\_debugging::vec\_chksum\_c}, \hyperpage{3664}
  \item {circ\_conic\_ridge}
    \subitem {basin\_builder}, \hyperpage{166}
  \item {circ\_ridge}
    \subitem {neverworld\_initialization}, \hyperpage{2745}
  \item {circ\_scurve\_ridge}
    \subitem {basin\_builder}, \hyperpage{167}
  \item {circle\_obcs\_initialization}, \hyperpage{193}
    \subitem {circle\_obcs\_initialize\_thickness}, \hyperpage{193}
  \item {circle\_obcs\_initialize\_thickness}
    \subitem {circle\_obcs\_initialization}, \hyperpage{193}
  \item {clearparameterblock}
    \subitem {mom\_file\_parser}, \hyperpage{1349}
  \item {clone\_md\_to\_d2d}
    \subitem {mom\_domains}, \hyperpage{1096}
    \subitem {mom\_domains::clone\_mom\_domain}, \hyperpage{3099}
  \item {clone\_md\_to\_md}
    \subitem {mom\_domains}, \hyperpage{1098}
    \subitem {mom\_domains::clone\_mom\_domain}, \hyperpage{3101}
  \item {close\_param\_file}
    \subitem {mom\_file\_parser}, \hyperpage{1349}
  \item {close\_profile\_file}
    \subitem {write\_ocean\_obs\_mod}, \hyperpage{2952}
  \item {closemultilinecomment}
    \subitem {mom\_file\_parser}, \hyperpage{1351}
  \item {closeparameterblock}
    \subitem {mom\_file\_parser}, \hyperpage{1351}
  \item {cmor\_long\_std}
    \subitem {mom\_io}, \hyperpage{1711}
  \item {compare\_nsp\_row}
    \subitem {mom\_neutral\_diffusion}, \hyperpage{1860}
  \item {complete\_group\_pass}
    \subitem {mom\_domains}, \hyperpage{1100}
  \item {compute\_ddiff\_coeffs}
    \subitem {mom\_cvmix\_ddiff}, \hyperpage{750}
  \item {compute\_global\_grid\_integrals}
    \subitem {mom\_shared\_initialization}, \hyperpage{2332}
    \subitem {mom\_state\_initialization}, \hyperpage{2374}
  \item {cone}
    \subitem {basin\_builder}, \hyperpage{167}
    \subitem {neverworld\_initialization}, \hyperpage{2746}
  \item {constant\_string}
    \subitem {mom\_energetic\_pbl}, \hyperpage{1215}
  \item {continuity}
    \subitem {mom\_continuity}, \hyperpage{659}
  \item {continuity\_end}
    \subitem {mom\_continuity}, \hyperpage{661}
  \item {continuity\_init}
    \subitem {mom\_continuity}, \hyperpage{661}
  \item {continuity\_ppm}
    \subitem {mom\_continuity\_ppm}, \hyperpage{664}
  \item {continuity\_ppm\_end}
    \subitem {mom\_continuity\_ppm}, \hyperpage{667}
  \item {continuity\_ppm\_init}
    \subitem {mom\_continuity\_ppm}, \hyperpage{667}
  \item {continuity\_ppm\_stencil}
    \subitem {mom\_continuity\_ppm}, \hyperpage{669}
  \item {continuity\_scheme}
    \subitem {mom\_continuity::continuity\_cs}, \hyperpage{3105}
  \item {continuity\_stencil}
    \subitem {mom\_continuity}, \hyperpage{662}
  \item {controlled\_forcing\_end}
    \subitem {mom\_controlled\_forcing}, \hyperpage{711}
  \item {controlled\_forcing\_init}
    \subitem {mom\_controlled\_forcing}, \hyperpage{711}
  \item {convective\_adjustment}
    \subitem {mom\_bulk\_mixed\_layer}, \hyperpage{550}
    \subitem {mom\_regridding}, \hyperpage{2149}
  \item {convert\_date\_to\_string}
    \subitem {mom\_file\_parser}, \hyperpage{1352}
  \item {convert\_state\_to\_ocean\_type}
    \subitem {ocean\_model\_mod}, \hyperpage{2756}
  \item {convert\_temp\_salt\_for\_teos10}
    \subitem {mom\_eos}, \hyperpage{1280}
  \item {convert\_thickness}
    \subitem {mom\_state\_initialization}, \hyperpage{2374}
  \item {coord\_adapt}, \hyperpage{195}
    \subitem {build\_adapt\_column}, \hyperpage{195}
    \subitem {end\_coord\_adapt}, \hyperpage{198}
    \subitem {init\_coord\_adapt}, \hyperpage{198}
    \subitem {set\_adapt\_params}, \hyperpage{199}
  \item {coord\_adapt::adapt\_cs}, \hyperpage{2957}
  \item {coord\_hycom}, \hyperpage{200}
    \subitem {build\_hycom1\_column}, \hyperpage{200}
    \subitem {end\_coord\_hycom}, \hyperpage{202}
    \subitem {init\_coord\_hycom}, \hyperpage{202}
    \subitem {set\_hycom\_params}, \hyperpage{203}
  \item {coord\_hycom::hycom\_cs}, \hyperpage{3281}
  \item {coord\_rho}, \hyperpage{203}
    \subitem {build\_rho\_column}, \hyperpage{204}
    \subitem {build\_rho\_column\_iteratively}, \hyperpage{206}
    \subitem {copy\_finite\_thicknesses}, \hyperpage{208}
    \subitem {end\_coord\_rho}, \hyperpage{209}
    \subitem {init\_coord\_rho}, \hyperpage{210}
    \subitem {old\_inflate\_layers\_1d}, \hyperpage{210}
    \subitem {set\_rho\_params}, \hyperpage{211}
  \item {coord\_rho::rho\_cs}, \hyperpage{3543}
  \item {coord\_sigma}, \hyperpage{212}
    \subitem {build\_sigma\_column}, \hyperpage{212}
    \subitem {end\_coord\_sigma}, \hyperpage{213}
    \subitem {init\_coord\_sigma}, \hyperpage{213}
    \subitem {set\_sigma\_params}, \hyperpage{214}
  \item {coord\_sigma::sigma\_cs}, \hyperpage{3577}
  \item {coord\_slight}, \hyperpage{214}
    \subitem {build\_slight\_column}, \hyperpage{214}
    \subitem {end\_coord\_slight}, \hyperpage{219}
    \subitem {init\_coord\_slight}, \hyperpage{219}
    \subitem {rho\_interfaces\_col}, \hyperpage{220}
    \subitem {set\_slight\_params}, \hyperpage{224}
  \item {coord\_slight::slight\_cs}, \hyperpage{3577}
  \item {coord\_zlike}, \hyperpage{226}
    \subitem {build\_zstar\_column}, \hyperpage{226}
    \subitem {end\_coord\_zlike}, \hyperpage{228}
    \subitem {init\_coord\_zlike}, \hyperpage{228}
    \subitem {set\_zlike\_params}, \hyperpage{228}
  \item {coord\_zlike::zlike\_cs}, \hyperpage{3680}
  \item {coordinatemode}
    \subitem {regrid\_consts}, \hyperpage{2845}
  \item {coordinateunitsi}
    \subitem {regrid\_consts}, \hyperpage{2845}
    \subitem {regrid\_consts::coordinateunits}, \hyperpage{3107}
  \item {coordinateunitss}
    \subitem {regrid\_consts}, \hyperpage{2846}
    \subitem {regrid\_consts::coordinateunits}, \hyperpage{3108}
  \item {copy\_back\_forcing\_fields}
    \subitem {mom\_forcing\_type}, \hyperpage{1407}
  \item {copy\_common\_forcing\_fields}
    \subitem {mom\_forcing\_type}, \hyperpage{1407}
  \item {copy\_dyngrid\_to\_mom\_grid}
    \subitem {mom\_transcribe\_grid}, \hyperpage{2637}
  \item {copy\_finite\_thicknesses}
    \subitem {coord\_rho}, \hyperpage{208}
  \item {copy\_mom\_grid\_to\_dyngrid}
    \subitem {mom\_transcribe\_grid}, \hyperpage{2639}
  \item {coradcalc}
    \subitem {mom\_coriolisadv}, \hyperpage{726}
  \item {coriolis\_scheme}
    \subitem {mom\_coriolisadv::coriolisadv\_cs}, \hyperpage{3110}
  \item {coriolisadv\_end}
    \subitem {mom\_coriolisadv}, \hyperpage{737}
  \item {coriolisadv\_init}
    \subitem {mom\_coriolisadv}, \hyperpage{737}
  \item {coriolisstokes}
    \subitem {mom\_wave\_interface}, \hyperpage{2687}
  \item {correct\_halo\_rotation}
    \subitem {mom\_internal\_tides}, \hyperpage{1670}
  \item {cosbell}
    \subitem {neverworld\_initialization}, \hyperpage{2746}
  \item {coupler}
    \subitem {mom\_wave\_interface}, \hyperpage{2707}
  \item {cpu\_clock\_id}
    \subitem {mom\_cpu\_clock}, \hyperpage{743}
  \item {create\_depth\_list}
    \subitem {mom\_sum\_output}, \hyperpage{2427}
  \item {create\_dyn\_horgrid}
    \subitem {mom\_dyn\_horgrid}, \hyperpage{1136}
  \item {create\_file}
    \subitem {mom\_io}, \hyperpage{1711}
  \item {create\_var\_group\_pass\_2d}
    \subitem {mom\_domains}, \hyperpage{1101}
    \subitem {mom\_domains::create\_group\_pass}, \hyperpage{3112}
  \item {create\_var\_group\_pass\_3d}
    \subitem {mom\_domains}, \hyperpage{1102}
    \subitem {mom\_domains::create\_group\_pass}, \hyperpage{3113}
  \item {create\_vector\_group\_pass\_2d}
    \subitem {mom\_domains}, \hyperpage{1103}
    \subitem {mom\_domains::create\_group\_pass}, \hyperpage{3114}
  \item {create\_vector\_group\_pass\_3d}
    \subitem {mom\_domains}, \hyperpage{1104}
    \subitem {mom\_domains::create\_group\_pass}, \hyperpage{3115}
  \item {cstprof}
    \subitem {basin\_builder}, \hyperpage{168}
    \subitem {neverworld\_initialization}, \hyperpage{2747}
  \item {cut\_off\_column\_top}
    \subitem {mom\_state\_initialization}, \hyperpage{2376}
  \item {cvmix\_bkgnd\_is\_used}
    \subitem {mom\_bkgnd\_mixing}, \hyperpage{532}
  \item {cvmix\_conv\_end}
    \subitem {mom\_cvmix\_conv}, \hyperpage{747}
  \item {cvmix\_conv\_init}
    \subitem {mom\_cvmix\_conv}, \hyperpage{747}
  \item {cvmix\_conv\_is\_used}
    \subitem {mom\_cvmix\_conv}, \hyperpage{749}
  \item {cvmix\_ddiff\_end}
    \subitem {mom\_cvmix\_ddiff}, \hyperpage{752}
  \item {cvmix\_ddiff\_init}
    \subitem {mom\_cvmix\_ddiff}, \hyperpage{752}
  \item {cvmix\_ddiff\_is\_used}
    \subitem {mom\_cvmix\_ddiff}, \hyperpage{754}
  \item {cvmix\_shear\_end}
    \subitem {mom\_cvmix\_shear}, \hyperpage{779}
  \item {cvmix\_shear\_init}
    \subitem {mom\_cvmix\_shear}, \hyperpage{779}
  \item {cvmix\_shear\_is\_used}
    \subitem {mom\_cvmix\_shear}, \hyperpage{781}

  \indexspace

  \item {dataoverrideisinitialized}
    \subitem {mom\_wave\_interface}, \hyperpage{2707}
  \item {dataovr}
    \subitem {mom\_wave\_interface}, \hyperpage{2707}
  \item {datasource}
    \subitem {mom\_wave\_interface}, \hyperpage{2707}
  \item {dealloc\_bt\_cont\_type}
    \subitem {mom\_variables}, \hyperpage{2650}
  \item {deallocate\_forcing\_type}
    \subitem {mom\_forcing\_type}, \hyperpage{1408}
  \item {deallocate\_mech\_forcing}
    \subitem {mom\_forcing\_type}, \hyperpage{1409}
  \item {deallocate\_obc\_segment\_data}
    \subitem {mom\_open\_boundary}, \hyperpage{2004}
  \item {deallocate\_surface\_state}
    \subitem {mom\_variables}, \hyperpage{2651}
  \item {define\_axes\_group}
    \subitem {mom\_diag\_mediator}, \hyperpage{923}
  \item {define\_axes\_group\_dsamp}
    \subitem {mom\_diag\_mediator}, \hyperpage{925}
  \item {define\_string}
    \subitem {mom\_document}, \hyperpage{1072}
  \item {delta\_rho\_from\_derivs}
    \subitem {mom\_neutral\_diffusion}, \hyperpage{1860}
  \item {dense\_water\_initialization}, \hyperpage{229}
    \subitem {dense\_water\_initialize\_sponges}, \hyperpage{229}
    \subitem {dense\_water\_initialize\_topography}, \hyperpage{232}
    \subitem {dense\_water\_initialize\_ts}, \hyperpage{233}
  \item {dense\_water\_initialize\_sponges}
    \subitem {dense\_water\_initialization}, \hyperpage{229}
  \item {dense\_water\_initialize\_topography}
    \subitem {dense\_water\_initialization}, \hyperpage{232}
  \item {dense\_water\_initialize\_ts}
    \subitem {dense\_water\_initialization}, \hyperpage{233}
  \item {depress\_surface}
    \subitem {mom\_state\_initialization}, \hyperpage{2378}
  \item {depth\_list\_setup}
    \subitem {mom\_sum\_output}, \hyperpage{2429}
  \item {describe\_option}
    \subitem {mom\_diag\_mediator}, \hyperpage{928}
  \item {destroy\_bt\_obc}
    \subitem {mom\_barotropic}, \hyperpage{507}
  \item {destroy\_dyn\_horgrid}
    \subitem {mom\_dyn\_horgrid}, \hyperpage{1137}
  \item {determine\_dskb}
    \subitem {mom\_entrain\_diffusive}, \hyperpage{1218}
  \item {determine\_ea\_kb}
    \subitem {mom\_entrain\_diffusive}, \hyperpage{1221}
  \item {determine\_is\_new\_run}
    \subitem {mom\_restart}, \hyperpage{2225}
  \item {determine\_temperature}
    \subitem {mom\_tracer\_z\_init}, \hyperpage{2624}
  \item {dhh85}
    \subitem {mom\_wave\_interface}, \hyperpage{2707}
  \item {dhh85\_is\_set}
    \subitem {mom\_wave\_interface}, \hyperpage{2708}
  \item {dhh85\_mid}
    \subitem {mom\_wave\_interface}, \hyperpage{2688}
  \item {diabatic}
    \subitem {mom\_diabatic\_driver}, \hyperpage{861}
  \item {diabatic\_ale}
    \subitem {mom\_diabatic\_driver}, \hyperpage{864}
  \item {diabatic\_ale\_legacy}
    \subitem {mom\_diabatic\_driver}, \hyperpage{874}
  \item {diabatic\_aux\_end}
    \subitem {mom\_diabatic\_aux}, \hyperpage{842}
  \item {diabatic\_aux\_init}
    \subitem {mom\_diabatic\_aux}, \hyperpage{842}
  \item {diabatic\_driver\_end}
    \subitem {mom\_diabatic\_driver}, \hyperpage{883}
  \item {diabatic\_driver\_init}
    \subitem {mom\_diabatic\_driver}, \hyperpage{884}
  \item {diag\_associate\_volume\_cell\_measure}
    \subitem {mom\_diag\_mediator}, \hyperpage{928}
  \item {diag\_copy\_diag\_to\_storage}
    \subitem {mom\_diag\_mediator}, \hyperpage{929}
  \item {diag\_copy\_storage\_to\_diag}
    \subitem {mom\_diag\_mediator}, \hyperpage{929}
  \item {diag\_get\_volume\_cell\_measure\_dm\_id}
    \subitem {mom\_diag\_mediator}, \hyperpage{930}
  \item {diag\_grid\_storage\_end}
    \subitem {mom\_diag\_mediator}, \hyperpage{930}
  \item {diag\_grid\_storage\_init}
    \subitem {mom\_diag\_mediator}, \hyperpage{931}
  \item {diag\_masks\_set}
    \subitem {mom\_diag\_mediator}, \hyperpage{931}
  \item {diag\_mediator\_close\_registration}
    \subitem {mom\_diag\_mediator}, \hyperpage{932}
  \item {diag\_mediator\_end}
    \subitem {mom\_diag\_mediator}, \hyperpage{932}
  \item {diag\_mediator\_infrastructure\_init}
    \subitem {mom\_diag\_mediator}, \hyperpage{933}
  \item {diag\_mediator\_init}
    \subitem {mom\_diag\_mediator}, \hyperpage{934}
  \item {diag\_register\_area\_ids}
    \subitem {mom\_diag\_mediator}, \hyperpage{937}
  \item {diag\_remap\_axes\_configured}
    \subitem {mom\_diag\_remap}, \hyperpage{995}
  \item {diag\_remap\_calc\_hmask}
    \subitem {mom\_diag\_remap}, \hyperpage{995}
  \item {diag\_remap\_configure\_axes}
    \subitem {mom\_diag\_remap}, \hyperpage{996}
  \item {diag\_remap\_diag\_registration\_closed}
    \subitem {mom\_diag\_remap}, \hyperpage{997}
  \item {diag\_remap\_do\_remap}
    \subitem {mom\_diag\_remap}, \hyperpage{997}
  \item {diag\_remap\_end}
    \subitem {mom\_diag\_remap}, \hyperpage{999}
  \item {diag\_remap\_get\_axes\_info}
    \subitem {mom\_diag\_remap}, \hyperpage{999}
  \item {diag\_remap\_init}
    \subitem {mom\_diag\_remap}, \hyperpage{1000}
  \item {diag\_remap\_set\_active}
    \subitem {mom\_diag\_remap}, \hyperpage{1000}
  \item {diag\_remap\_update}
    \subitem {mom\_diag\_remap}, \hyperpage{1001}
  \item {diag\_restore\_grids}
    \subitem {mom\_diag\_mediator}, \hyperpage{937}
  \item {diag\_save\_grids}
    \subitem {mom\_diag\_mediator}, \hyperpage{938}
  \item {diag\_set\_state\_ptrs}
    \subitem {mom\_diag\_mediator}, \hyperpage{938}
  \item {diag\_update\_remap\_grids}
    \subitem {mom\_diag\_mediator}, \hyperpage{939}
  \item {diag\_vkernels\_unit\_tests}
    \subitem {mom\_diag\_vkernels}, \hyperpage{1008}
  \item {diagnose\_boundary\_forcing\_tendency}
    \subitem {mom\_diabatic\_driver}, \hyperpage{892}
  \item {diagnose\_diabatic\_diff\_tendency}
    \subitem {mom\_diabatic\_driver}, \hyperpage{894}
  \item {diagnose\_frazil\_tendency}
    \subitem {mom\_diabatic\_driver}, \hyperpage{896}
  \item {diagnosemaximumdepth}
    \subitem {mom\_shared\_initialization}, \hyperpage{2333}
  \item {diagnosemldbydensitydifference}
    \subitem {mom\_diabatic\_aux}, \hyperpage{844}
  \item {diagnosemldbyenergy}
    \subitem {mom\_diabatic\_aux}, \hyperpage{847}
  \item {diapyc\_energy\_req\_calc}
    \subitem {mom\_diapyc\_energy\_req}, \hyperpage{1049}
  \item {diapyc\_energy\_req\_end}
    \subitem {mom\_diapyc\_energy\_req}, \hyperpage{1060}
  \item {diapyc\_energy\_req\_init}
    \subitem {mom\_diapyc\_energy\_req}, \hyperpage{1061}
  \item {diapyc\_energy\_req\_test}
    \subitem {mom\_diapyc\_energy\_req}, \hyperpage{1062}
  \item {differential\_diffuse\_t\_s}
    \subitem {mom\_diabatic\_aux}, \hyperpage{850}
  \item {disable\_averaging}
    \subitem {mom\_diag\_mediator}, \hyperpage{940}
  \item {dist\_line\_fixed\_x}
    \subitem {basin\_builder}, \hyperpage{168}
    \subitem {neverworld\_initialization}, \hyperpage{2747}
  \item {dist\_line\_fixed\_y}
    \subitem {basin\_builder}, \hyperpage{169}
    \subitem {neverworld\_initialization}, \hyperpage{2748}
  \item {distribute\_residual\_uh\_barotropic}
    \subitem {mom\_offline\_aux}, \hyperpage{1938}
  \item {distribute\_residual\_uh\_upwards}
    \subitem {mom\_offline\_aux}, \hyperpage{1939}
  \item {distribute\_residual\_vh\_barotropic}
    \subitem {mom\_offline\_aux}, \hyperpage{1941}
  \item {distribute\_residual\_vh\_upwards}
    \subitem {mom\_offline\_aux}, \hyperpage{1942}
  \item {dl}
    \subitem {mom\_grid\_initialize}, \hyperpage{1495}
  \item {do\_group\_pass}
    \subitem {mom\_domains}, \hyperpage{1105}
  \item {doc\_closeblock}
    \subitem {mom\_document}, \hyperpage{1073}
  \item {doc\_end}
    \subitem {mom\_document}, \hyperpage{1073}
  \item {doc\_function}
    \subitem {mom\_document}, \hyperpage{1074}
  \item {doc\_init}
    \subitem {mom\_document}, \hyperpage{1075}
  \item {doc\_module}
    \subitem {mom\_document}, \hyperpage{1075}
  \item {doc\_openblock}
    \subitem {mom\_document}, \hyperpage{1076}
  \item {doc\_param\_char}
    \subitem {mom\_document}, \hyperpage{1077}
    \subitem {mom\_document::doc\_param}, \hyperpage{3159}
  \item {doc\_param\_int}
    \subitem {mom\_document}, \hyperpage{1078}
    \subitem {mom\_document::doc\_param}, \hyperpage{3160}
  \item {doc\_param\_int\_array}
    \subitem {mom\_document}, \hyperpage{1079}
    \subitem {mom\_document::doc\_param}, \hyperpage{3161}
  \item {doc\_param\_logical}
    \subitem {mom\_document}, \hyperpage{1080}
    \subitem {mom\_document::doc\_param}, \hyperpage{3162}
  \item {doc\_param\_logical\_array}
    \subitem {mom\_document}, \hyperpage{1081}
    \subitem {mom\_document::doc\_param}, \hyperpage{3163}
  \item {doc\_param\_none}
    \subitem {mom\_document}, \hyperpage{1082}
    \subitem {mom\_document::doc\_param}, \hyperpage{3164}
  \item {doc\_param\_real}
    \subitem {mom\_document}, \hyperpage{1083}
    \subitem {mom\_document::doc\_param}, \hyperpage{3164}
  \item {doc\_param\_real\_array}
    \subitem {mom\_document}, \hyperpage{1084}
    \subitem {mom\_document::doc\_param}, \hyperpage{3165}
  \item {doc\_param\_time}
    \subitem {mom\_document}, \hyperpage{1085}
    \subitem {mom\_document::doc\_param}, \hyperpage{3166}
  \item {doc\_subroutine}
    \subitem {mom\_document}, \hyperpage{1086}
  \item {dome2d\_initialization}, \hyperpage{234}
    \subitem {dome2d\_initialize\_sponges}, \hyperpage{234}
    \subitem {dome2d\_initialize\_temperature\_salinity}, 
		\hyperpage{237}
    \subitem {dome2d\_initialize\_thickness}, \hyperpage{239}
    \subitem {dome2d\_initialize\_topography}, \hyperpage{241}
  \item {dome2d\_initialize\_sponges}
    \subitem {dome2d\_initialization}, \hyperpage{234}
  \item {dome2d\_initialize\_temperature\_salinity}
    \subitem {dome2d\_initialization}, \hyperpage{237}
  \item {dome2d\_initialize\_thickness}
    \subitem {dome2d\_initialization}, \hyperpage{239}
  \item {dome2d\_initialize\_topography}
    \subitem {dome2d\_initialization}, \hyperpage{241}
  \item {dome\_initialization}, \hyperpage{242}
    \subitem {dome\_initialize\_sponges}, \hyperpage{242}
    \subitem {dome\_initialize\_thickness}, \hyperpage{244}
    \subitem {dome\_initialize\_topography}, \hyperpage{245}
    \subitem {dome\_set\_obc\_data}, \hyperpage{246}
  \item {dome\_initialize\_sponges}
    \subitem {dome\_initialization}, \hyperpage{242}
  \item {dome\_initialize\_thickness}
    \subitem {dome\_initialization}, \hyperpage{244}
  \item {dome\_initialize\_topography}
    \subitem {dome\_initialization}, \hyperpage{245}
  \item {dome\_set\_obc\_data}
    \subitem {dome\_initialization}, \hyperpage{246}
  \item {dome\_tracer}, \hyperpage{249}
    \subitem {dome\_tracer\_column\_physics}, \hyperpage{249}
    \subitem {dome\_tracer\_end}, \hyperpage{251}
    \subitem {dome\_tracer\_surface\_state}, \hyperpage{251}
    \subitem {initialize\_dome\_tracer}, \hyperpage{252}
    \subitem {register\_dome\_tracer}, \hyperpage{254}
  \item {dome\_tracer::dome\_tracer\_cs}, \hyperpage{3169}
  \item {dome\_tracer\_column\_physics}
    \subitem {dome\_tracer}, \hyperpage{249}
  \item {dome\_tracer\_end}
    \subitem {dome\_tracer}, \hyperpage{251}
  \item {dome\_tracer\_surface\_state}
    \subitem {dome\_tracer}, \hyperpage{251}
  \item {double\_diffusion}
    \subitem {mom\_set\_diffusivity}, \hyperpage{2273}
  \item {downsample\_diag\_field\_2d}
    \subitem {mom\_diag\_mediator}, \hyperpage{940}
    \subitem {mom\_diag\_mediator::downsample\_diag\_field}, 
		\hyperpage{3171}
  \item {downsample\_diag\_field\_3d}
    \subitem {mom\_diag\_mediator}, \hyperpage{942}
    \subitem {mom\_diag\_mediator::downsample\_diag\_field}, 
		\hyperpage{3173}
  \item {downsample\_diag\_indices\_get}
    \subitem {mom\_diag\_mediator}, \hyperpage{943}
  \item {downsample\_diag\_masks\_set}
    \subitem {mom\_diag\_mediator}, \hyperpage{944}
  \item {downsample\_field\_2d}
    \subitem {mom\_diag\_mediator}, \hyperpage{945}
    \subitem {mom\_diag\_mediator::downsample\_field}, \hyperpage{3174}
  \item {downsample\_field\_3d}
    \subitem {mom\_diag\_mediator}, \hyperpage{948}
    \subitem {mom\_diag\_mediator::downsample\_field}, \hyperpage{3177}
  \item {downsample\_mask\_2d}
    \subitem {mom\_diag\_mediator}, \hyperpage{951}
    \subitem {mom\_diag\_mediator::downsample\_mask}, \hyperpage{3180}
  \item {downsample\_mask\_3d}
    \subitem {mom\_diag\_mediator}, \hyperpage{952}
    \subitem {mom\_diag\_mediator::downsample\_mask}, \hyperpage{3181}
  \item {ds\_di}
    \subitem {mom\_grid\_initialize}, \hyperpage{1497}
  \item {ds\_dj}
    \subitem {mom\_grid\_initialize}, \hyperpage{1497}
  \item {dtdy}
    \subitem {rossby\_front\_2d\_initialization}, \hyperpage{2892}
  \item {dumbbell\_buoyancy\_forcing}
    \subitem {dumbbell\_surface\_forcing}, \hyperpage{263}
  \item {dumbbell\_dynamic\_forcing}
    \subitem {dumbbell\_surface\_forcing}, \hyperpage{264}
  \item {dumbbell\_initialization}, \hyperpage{256}
    \subitem {dumbbell\_initialize\_sponges}, \hyperpage{256}
    \subitem {dumbbell\_initialize\_temperature\_salinity}, 
		\hyperpage{258}
    \subitem {dumbbell\_initialize\_thickness}, \hyperpage{259}
    \subitem {dumbbell\_initialize\_topography}, \hyperpage{261}
  \item {dumbbell\_initialize\_sponges}
    \subitem {dumbbell\_initialization}, \hyperpage{256}
  \item {dumbbell\_initialize\_temperature\_salinity}
    \subitem {dumbbell\_initialization}, \hyperpage{258}
  \item {dumbbell\_initialize\_thickness}
    \subitem {dumbbell\_initialization}, \hyperpage{259}
  \item {dumbbell\_initialize\_topography}
    \subitem {dumbbell\_initialization}, \hyperpage{261}
  \item {dumbbell\_surface\_forcing}, \hyperpage{262}
    \subitem {dumbbell\_buoyancy\_forcing}, \hyperpage{263}
    \subitem {dumbbell\_dynamic\_forcing}, \hyperpage{264}
    \subitem {dumbbell\_surface\_forcing\_init}, \hyperpage{265}
  \item {dumbbell\_surface\_forcing::dumbbell\_surface\_forcing\_cs}, 
		\hyperpage{3183}
  \item {dumbbell\_surface\_forcing\_init}
    \subitem {dumbbell\_surface\_forcing}, \hyperpage{265}
  \item {dumpgrid}
    \subitem {mom\_remapping}, \hyperpage{2196}
  \item {dx\_di}
    \subitem {mom\_grid\_initialize}, \hyperpage{1498}
  \item {dy\_dj}
    \subitem {mom\_grid\_initialize}, \hyperpage{1498}
  \item {dye\_stock}
    \subitem {regional\_dyes}, \hyperpage{2837}
  \item {dye\_tracer\_column\_physics}
    \subitem {regional\_dyes}, \hyperpage{2838}
  \item {dye\_tracer\_surface\_state}
    \subitem {regional\_dyes}, \hyperpage{2839}
  \item {dyed\_channel\_initialization}, \hyperpage{267}
    \subitem {dyed\_channel\_obc\_end}, \hyperpage{267}
    \subitem {dyed\_channel\_set\_obc\_tracer\_data}, \hyperpage{268}
    \subitem {dyed\_channel\_update\_flow}, \hyperpage{269}
    \subitem {ntr}, \hyperpage{270}
    \subitem {register\_dyed\_channel\_obc}, \hyperpage{270}
  \item {dyed\_channel\_initialization::dyed\_channel\_obc\_cs}, 
		\hyperpage{3186}
  \item {dyed\_channel\_obc\_end}
    \subitem {dyed\_channel\_initialization}, \hyperpage{267}
  \item {dyed\_channel\_set\_obc\_tracer\_data}
    \subitem {dyed\_channel\_initialization}, \hyperpage{268}
  \item {dyed\_channel\_update\_flow}
    \subitem {dyed\_channel\_initialization}, \hyperpage{269}
  \item {dyed\_obc\_tracer}, \hyperpage{271}
    \subitem {dyed\_obc\_tracer\_column\_physics}, \hyperpage{271}
    \subitem {dyed\_obc\_tracer\_end}, \hyperpage{273}
    \subitem {initialize\_dyed\_obc\_tracer}, \hyperpage{273}
    \subitem {register\_dyed\_obc\_tracer}, \hyperpage{274}
  \item {dyed\_obc\_tracer::dyed\_obc\_tracer\_cs}, \hyperpage{3187}
  \item {dyed\_obc\_tracer\_column\_physics}
    \subitem {dyed\_obc\_tracer}, \hyperpage{271}
  \item {dyed\_obc\_tracer\_end}
    \subitem {dyed\_obc\_tracer}, \hyperpage{273}
  \item {dyed\_obcs\_initialization}, \hyperpage{276}
    \subitem {dyed\_obcs\_set\_obc\_data}, \hyperpage{276}
    \subitem {ntr}, \hyperpage{277}
  \item {dyed\_obcs\_set\_obc\_data}
    \subitem {dyed\_obcs\_initialization}, \hyperpage{276}
  \item {dz\_function1}
    \subitem {mom\_regridding}, \hyperpage{2150}
  \item {dzfromh1h2}
    \subitem {mom\_remapping}, \hyperpage{2196}

  \indexspace

  \item {edge\_slopes\_implicit\_h3}
    \subitem {regrid\_edge\_values}, \hyperpage{2850}
  \item {edge\_slopes\_implicit\_h5}
    \subitem {regrid\_edge\_values}, \hyperpage{2853}
  \item {edge\_values\_explicit\_h2}
    \subitem {regrid\_edge\_values}, \hyperpage{2856}
  \item {edge\_values\_explicit\_h4}
    \subitem {regrid\_edge\_values}, \hyperpage{2857}
  \item {edge\_values\_implicit\_h4}
    \subitem {regrid\_edge\_values}, \hyperpage{2859}
  \item {edge\_values\_implicit\_h6}
    \subitem {regrid\_edge\_values}, \hyperpage{2862}
  \item {ef4}
    \subitem {mom\_bulk\_mixed\_layer}, \hyperpage{552}
  \item {efp\_assign}
    \subitem {mom\_coms}, \hyperpage{643}
    \subitem {mom\_coms::assignment(=)}, \hyperpage{2974}
  \item {efp\_list\_sum\_across\_pes}
    \subitem {mom\_coms}, \hyperpage{644}
    \subitem {mom\_coms::efp\_sum\_across\_pes}, \hyperpage{3195}
  \item {efp\_minus}
    \subitem {mom\_coms}, \hyperpage{645}
    \subitem {mom\_coms::operator(-\/)}, \hyperpage{3444}
  \item {efp\_plus}
    \subitem {mom\_coms}, \hyperpage{645}
    \subitem {mom\_coms::operator(+)}, \hyperpage{3444}
  \item {efp\_real\_diff}
    \subitem {mom\_coms}, \hyperpage{645}
  \item {efp\_to\_real}
    \subitem {mom\_coms}, \hyperpage{646}
  \item {efp\_val\_sum\_across\_pes}
    \subitem {mom\_coms}, \hyperpage{646}
    \subitem {mom\_coms::efp\_sum\_across\_pes}, \hyperpage{3196}
  \item {enable\_averages}
    \subitem {mom\_diag\_mediator}, \hyperpage{953}
  \item {enable\_averaging}
    \subitem {mom\_diag\_mediator}, \hyperpage{954}
  \item {end\_coord\_adapt}
    \subitem {coord\_adapt}, \hyperpage{198}
  \item {end\_coord\_hycom}
    \subitem {coord\_hycom}, \hyperpage{202}
  \item {end\_coord\_rho}
    \subitem {coord\_rho}, \hyperpage{209}
  \item {end\_coord\_sigma}
    \subitem {coord\_sigma}, \hyperpage{213}
  \item {end\_coord\_slight}
    \subitem {coord\_slight}, \hyperpage{219}
  \item {end\_coord\_zlike}
    \subitem {coord\_zlike}, \hyperpage{228}
  \item {end\_dyn\_split\_rk2}
    \subitem {mom\_dynamics\_split\_rk2}, \hyperpage{1140}
  \item {end\_dyn\_unsplit}
    \subitem {mom\_dynamics\_unsplit}, \hyperpage{1160}
  \item {end\_dyn\_unsplit\_rk2}
    \subitem {mom\_dynamics\_unsplit\_rk2}, \hyperpage{1170}
  \item {end\_mom\_generic\_tracer}
    \subitem {mom\_generic\_tracer}, \hyperpage{1460}
  \item {end\_regridding}
    \subitem {mom\_regridding}, \hyperpage{2150}
  \item {end\_remapping}
    \subitem {mom\_remapping}, \hyperpage{2197}
  \item {end\_value\_h4}
    \subitem {regrid\_edge\_values}, \hyperpage{2865}
  \item {energetic\_pbl}
    \subitem {mom\_energetic\_pbl}, \hyperpage{1180}
  \item {energetic\_pbl\_end}
    \subitem {mom\_energetic\_pbl}, \hyperpage{1185}
  \item {energetic\_pbl\_get\_mld}
    \subitem {mom\_energetic\_pbl}, \hyperpage{1185}
  \item {energetic\_pbl\_init}
    \subitem {mom\_energetic\_pbl}, \hyperpage{1186}
  \item {ensembler}
    \subitem {mom\_io}, \hyperpage{1715}
  \item {entrain\_diffusive\_end}
    \subitem {mom\_entrain\_diffusive}, \hyperpage{1225}
  \item {entrain\_diffusive\_init}
    \subitem {mom\_entrain\_diffusive}, \hyperpage{1226}
  \item {entrainment\_diffusive}
    \subitem {mom\_entrain\_diffusive}, \hyperpage{1227}
  \item {eos\_allocate}
    \subitem {mom\_eos}, \hyperpage{1281}
  \item {eos\_domain}
    \subitem {mom\_eos}, \hyperpage{1281}
  \item {eos\_end}
    \subitem {mom\_eos}, \hyperpage{1281}
  \item {eos\_init}
    \subitem {mom\_eos}, \hyperpage{1282}
  \item {eos\_manual\_init}
    \subitem {mom\_eos}, \hyperpage{1283}
  \item {eos\_quadrature}
    \subitem {mom\_eos}, \hyperpage{1284}
  \item {eos\_use\_linear}
    \subitem {mom\_eos}, \hyperpage{1285}
  \item {epbl\_column}
    \subitem {mom\_energetic\_pbl}, \hyperpage{1192}
  \item {evaluation\_polynomial}
    \subitem {polynomial\_functions}, \hyperpage{2809}
  \item {ew\_coast}
    \subitem {basin\_builder}, \hyperpage{169}
    \subitem {neverworld\_initialization}, \hyperpage{2748}
  \item {external\_gwave\_initialization}, \hyperpage{277}
    \subitem {external\_gwave\_initialize\_thickness}, \hyperpage{278}
  \item {external\_gwave\_initialize\_thickness}
    \subitem {external\_gwave\_initialization}, \hyperpage{278}
  \item {extract\_diabatic\_member}
    \subitem {mom\_diabatic\_driver}, \hyperpage{897}
  \item {extract\_integer}
    \subitem {mom\_string\_functions}, \hyperpage{2415}
  \item {extract\_member\_eos}
    \subitem {mom\_eos}, \hyperpage{1285}
  \item {extract\_member\_remapping\_cs}
    \subitem {mom\_remapping}, \hyperpage{2197}
  \item {extract\_offline\_main}
    \subitem {mom\_offline\_main}, \hyperpage{1955}
  \item {extract\_optics\_fields}
    \subitem {mom\_opacity}, \hyperpage{1983}
  \item {extract\_optics\_slice}
    \subitem {mom\_opacity}, \hyperpage{1984}
  \item {extract\_real}
    \subitem {mom\_string\_functions}, \hyperpage{2416}
  \item {extract\_surface\_state}
    \subitem {mom}, \hyperpage{352}
  \item {extract\_word}
    \subitem {mom\_string\_functions}, \hyperpage{2416}
  \item {extractfluxes1d}
    \subitem {mom\_forcing\_type}, \hyperpage{1409}
  \item {extractfluxes2d}
    \subitem {mom\_forcing\_type}, \hyperpage{1416}
  \item {extractword}
    \subitem {mom\_string\_functions}, \hyperpage{2417}
  \item {extrapolate\_metric}
    \subitem {mom\_grid\_initialize}, \hyperpage{1499}

  \indexspace

  \item {f\_kb\_to\_ea\_kb}
    \subitem {mom\_entrain\_diffusive}, \hyperpage{1238}
  \item {f\_to\_ent}
    \subitem {mom\_entrain\_diffusive}, \hyperpage{1240}
  \item {file\_obc\_end}
    \subitem {mom\_open\_boundary}, \hyperpage{2005}
  \item {fill\_boundaries\_int}
    \subitem {mom\_horizontal\_regridding}, \hyperpage{1552}
    \subitem {mom\_horizontal\_regridding::fill\_boundaries}, 
		\hyperpage{3211}
  \item {fill\_boundaries\_real}
    \subitem {mom\_horizontal\_regridding}, \hyperpage{1552}
    \subitem {mom\_horizontal\_regridding::fill\_boundaries}, 
		\hyperpage{3211}
  \item {fill\_miss\_2d}
    \subitem {mom\_horizontal\_regridding}, \hyperpage{1553}
  \item {fill\_temp\_salt\_segments}
    \subitem {mom\_open\_boundary}, \hyperpage{2005}
  \item {fill\_vector\_symmetric\_edges\_2d}
    \subitem {mom\_domains}, \hyperpage{1106}
    \subitem {mom\_domains::fill\_symmetric\_edges}, \hyperpage{3213}
  \item {filtered\_grid\_motion}
    \subitem {mom\_regridding}, \hyperpage{2151}
  \item {find\_coupling\_coef}
    \subitem {mom\_vert\_friction}, \hyperpage{2653}
  \item {find\_deficit\_ratios}
    \subitem {mom\_regularize\_layers}, \hyperpage{2176}
  \item {find\_depth\_of\_pressure\_in\_cell}
    \subitem {mom\_density\_integrals}, \hyperpage{803}
  \item {find\_duhbt\_du}
    \subitem {mom\_barotropic}, \hyperpage{507}
  \item {find\_dvhbt\_dv}
    \subitem {mom\_barotropic}, \hyperpage{508}
  \item {find\_eta\_2d}
    \subitem {mom\_interface\_heights}, \hyperpage{1664}
    \subitem {mom\_interface\_heights::find\_eta}, \hyperpage{3215}
  \item {find\_eta\_3d}
    \subitem {mom\_interface\_heights}, \hyperpage{1666}
    \subitem {mom\_interface\_heights::find\_eta}, \hyperpage{3217}
  \item {find\_face\_areas}
    \subitem {mom\_barotropic}, \hyperpage{509}
  \item {find\_in\_files}
    \subitem {mom\_tidal\_forcing}, \hyperpage{2514}
  \item {find\_interfaces}
    \subitem {mom\_state\_initialization}, \hyperpage{2379}
  \item {find\_kappa\_tke}
    \subitem {mom\_kappa\_shear}, \hyperpage{1750}
  \item {find\_limited\_slope}
    \subitem {mom\_tracer\_z\_init}, \hyperpage{2627}
  \item {find\_maxf\_kb}
    \subitem {mom\_entrain\_diffusive}, \hyperpage{1243}
  \item {find\_mstar}
    \subitem {mom\_energetic\_pbl}, \hyperpage{1205}
  \item {find\_n2}
    \subitem {mom\_set\_diffusivity}, \hyperpage{2274}
  \item {find\_n2\_bottom}
    \subitem {mom\_int\_tide\_input}, \hyperpage{1658}
  \item {find\_neutral\_pos\_full}
    \subitem {mom\_neutral\_diffusion}, \hyperpage{1861}
  \item {find\_neutral\_pos\_linear}
    \subitem {mom\_neutral\_diffusion}, \hyperpage{1863}
  \item {find\_neutral\_surface\_positions\_continuous}
    \subitem {mom\_neutral\_diffusion}, \hyperpage{1865}
  \item {find\_neutral\_surface\_positions\_discontinuous}
    \subitem {mom\_neutral\_diffusion}, \hyperpage{1869}
  \item {find\_obsolete\_params}
    \subitem {mom\_obsolete\_params}, \hyperpage{1913}
  \item {find\_overlap}
    \subitem {mom\_tracer\_z\_init}, \hyperpage{2627}
  \item {find\_pe\_chg}
    \subitem {mom\_diapyc\_energy\_req}, \hyperpage{1063}
    \subitem {mom\_energetic\_pbl}, \hyperpage{1206}
  \item {find\_pe\_chg\_orig}
    \subitem {mom\_diapyc\_energy\_req}, \hyperpage{1067}
    \subitem {mom\_energetic\_pbl}, \hyperpage{1210}
  \item {find\_root}
    \subitem {mom\_grid\_initialize}, \hyperpage{1499}
  \item {find\_starting\_tke}
    \subitem {mom\_bulk\_mixed\_layer}, \hyperpage{553}
  \item {find\_tke\_to\_kd}
    \subitem {mom\_set\_diffusivity}, \hyperpage{2277}
  \item {find\_uhbt}
    \subitem {mom\_barotropic}, \hyperpage{510}
  \item {find\_uv\_at\_h}
    \subitem {mom\_diabatic\_aux}, \hyperpage{851}
  \item {find\_vhbt}
    \subitem {mom\_barotropic}, \hyperpage{511}
  \item {find\_weights}
    \subitem {mom\_diagnostics}, \hyperpage{1029}
  \item {finish\_mom\_initialization}
    \subitem {mom}, \hyperpage{357}
  \item {first\_call}
    \subitem {bfb\_initialization}, \hyperpage{181}
    \subitem {user\_initialization}, \hyperpage{2933}
  \item {first\_derivative\_polynomial}
    \subitem {polynomial\_functions}, \hyperpage{2810}
  \item {fix\_restart\_scaling}
    \subitem {mom\_verticalgrid}, \hyperpage{2680}
  \item {fix\_restart\_unit\_scaling}
    \subitem {mom\_unit\_scaling}, \hyperpage{2644}
  \item {flag\_line\_as\_read}
    \subitem {mom\_file\_parser}, \hyperpage{1352}
  \item {flood\_fill}
    \subitem {mom\_open\_boundary}, \hyperpage{2006}
  \item {flood\_fill2}
    \subitem {mom\_open\_boundary}, \hyperpage{2007}
  \item {flux\_init\_ocmip2\_cfc}
    \subitem {mom\_ocmip2\_cfc}, \hyperpage{1918}
  \item {fluxes\_accumulate}
    \subitem {mom\_forcing\_type}, \hyperpage{1418}
  \item {fluxes\_bulk\_method}
    \subitem {mom\_lateral\_boundary\_diffusion}, \hyperpage{1773}
  \item {fluxes\_layer\_method}
    \subitem {mom\_lateral\_boundary\_diffusion}, \hyperpage{1777}
  \item {fms\_file\_exists}
    \subitem {mom\_io}, \hyperpage{1716}
    \subitem {mom\_io::file\_exists}, \hyperpage{3209}
  \item {forcing\_accumulate}
    \subitem {mom\_forcing\_type}, \hyperpage{1421}
  \item {forcing\_diagnostics}
    \subitem {mom\_forcing\_type}, \hyperpage{1421}
  \item {forcing\_save\_restart}
    \subitem {mom\_surface\_forcing}, \hyperpage{2457}
  \item {forcing\_singlepointprint}
    \subitem {mom\_forcing\_type}, \hyperpage{1429}
  \item {found\_in\_diagtable}
    \subitem {mom\_obsolete\_diagnostics}, \hyperpage{1911}
  \item {frac\_dp\_at\_pos}
    \subitem {mom\_density\_integrals}, \hyperpage{805}
  \item {full\_convection}
    \subitem {mom\_full\_convection}, \hyperpage{1452}
  \item {fv\_diff}
    \subitem {mom\_neutral\_diffusion}, \hyperpage{1874}
  \item {fvlsq\_slope}
    \subitem {mom\_neutral\_diffusion}, \hyperpage{1874}

  \indexspace

  \item {g\_tracer\_flux\_init}
    \subitem {g\_tracer\_utils}, \hyperpage{280}
  \item {g\_tracer\_get\_2d}
    \subitem {g\_tracer\_utils}, \hyperpage{281}
    \subitem {g\_tracer\_utils::g\_tracer\_get\_pointer}, 
		\hyperpage{3231}
  \item {g\_tracer\_get\_2d\_val}
    \subitem {g\_tracer\_utils}, \hyperpage{281}
    \subitem {g\_tracer\_utils::g\_tracer\_get\_values}, 
		\hyperpage{3233}
  \item {g\_tracer\_get\_3d}
    \subitem {g\_tracer\_utils}, \hyperpage{282}
    \subitem {g\_tracer\_utils::g\_tracer\_get\_pointer}, 
		\hyperpage{3231}
  \item {g\_tracer\_get\_3d\_val}
    \subitem {g\_tracer\_utils}, \hyperpage{282}
    \subitem {g\_tracer\_utils::g\_tracer\_get\_values}, 
		\hyperpage{3233}
  \item {g\_tracer\_get\_4d}
    \subitem {g\_tracer\_utils}, \hyperpage{283}
    \subitem {g\_tracer\_utils::g\_tracer\_get\_pointer}, 
		\hyperpage{3232}
  \item {g\_tracer\_get\_4d\_val}
    \subitem {g\_tracer\_utils}, \hyperpage{283}
    \subitem {g\_tracer\_utils::g\_tracer\_get\_values}, 
		\hyperpage{3234}
  \item {g\_tracer\_get\_alias}
    \subitem {g\_tracer\_utils}, \hyperpage{284}
  \item {g\_tracer\_get\_common}
    \subitem {g\_tracer\_utils}, \hyperpage{284}
  \item {g\_tracer\_get\_name}
    \subitem {g\_tracer\_utils}, \hyperpage{285}
  \item {g\_tracer\_get\_next}
    \subitem {g\_tracer\_utils}, \hyperpage{285}
  \item {g\_tracer\_get\_real}
    \subitem {g\_tracer\_utils}, \hyperpage{285}
    \subitem {g\_tracer\_utils::g\_tracer\_get\_values}, 
		\hyperpage{3235}
  \item {g\_tracer\_get\_string}
    \subitem {g\_tracer\_utils}, \hyperpage{286}
    \subitem {g\_tracer\_utils::g\_tracer\_get\_values}, 
		\hyperpage{3235}
  \item {g\_tracer\_is\_prog}
    \subitem {g\_tracer\_utils}, \hyperpage{286}
  \item {g\_tracer\_send\_diag}
    \subitem {g\_tracer\_utils}, \hyperpage{287}
  \item {g\_tracer\_set\_2d}
    \subitem {g\_tracer\_utils}, \hyperpage{287}
    \subitem {g\_tracer\_utils::g\_tracer\_set\_values}, 
		\hyperpage{3236}
  \item {g\_tracer\_set\_3d}
    \subitem {g\_tracer\_utils}, \hyperpage{287}
    \subitem {g\_tracer\_utils::g\_tracer\_set\_values}, 
		\hyperpage{3236}
  \item {g\_tracer\_set\_4d}
    \subitem {g\_tracer\_utils}, \hyperpage{288}
    \subitem {g\_tracer\_utils::g\_tracer\_set\_values}, 
		\hyperpage{3237}
  \item {g\_tracer\_set\_common}
    \subitem {g\_tracer\_utils}, \hyperpage{289}
  \item {g\_tracer\_set\_csdiag}
    \subitem {g\_tracer\_utils}, \hyperpage{289}
  \item {g\_tracer\_set\_real}
    \subitem {g\_tracer\_utils}, \hyperpage{290}
    \subitem {g\_tracer\_utils::g\_tracer\_set\_values}, 
		\hyperpage{3238}
  \item {g\_tracer\_utils}, \hyperpage{279}
    \subitem {g\_tracer\_flux\_init}, \hyperpage{280}
    \subitem {g\_tracer\_get\_2d}, \hyperpage{281}
    \subitem {g\_tracer\_get\_2d\_val}, \hyperpage{281}
    \subitem {g\_tracer\_get\_3d}, \hyperpage{282}
    \subitem {g\_tracer\_get\_3d\_val}, \hyperpage{282}
    \subitem {g\_tracer\_get\_4d}, \hyperpage{283}
    \subitem {g\_tracer\_get\_4d\_val}, \hyperpage{283}
    \subitem {g\_tracer\_get\_alias}, \hyperpage{284}
    \subitem {g\_tracer\_get\_common}, \hyperpage{284}
    \subitem {g\_tracer\_get\_name}, \hyperpage{285}
    \subitem {g\_tracer\_get\_next}, \hyperpage{285}
    \subitem {g\_tracer\_get\_real}, \hyperpage{285}
    \subitem {g\_tracer\_get\_string}, \hyperpage{286}
    \subitem {g\_tracer\_is\_prog}, \hyperpage{286}
    \subitem {g\_tracer\_send\_diag}, \hyperpage{287}
    \subitem {g\_tracer\_set\_2d}, \hyperpage{287}
    \subitem {g\_tracer\_set\_3d}, \hyperpage{287}
    \subitem {g\_tracer\_set\_4d}, \hyperpage{288}
    \subitem {g\_tracer\_set\_common}, \hyperpage{289}
    \subitem {g\_tracer\_set\_csdiag}, \hyperpage{289}
    \subitem {g\_tracer\_set\_real}, \hyperpage{290}
    \subitem {g\_tracer\_vertdiff\_g}, \hyperpage{290}
  \item {g\_tracer\_utils::g\_diag\_type}, \hyperpage{3229}
  \item {g\_tracer\_utils::g\_tracer\_common}, \hyperpage{3230}
    \subitem {isd}, \hyperpage{3230}
  \item {g\_tracer\_utils::g\_tracer\_get\_pointer}, \hyperpage{3231}
    \subitem {g\_tracer\_get\_2d}, \hyperpage{3231}
    \subitem {g\_tracer\_get\_3d}, \hyperpage{3231}
    \subitem {g\_tracer\_get\_4d}, \hyperpage{3232}
  \item {g\_tracer\_utils::g\_tracer\_get\_values}, \hyperpage{3232}
    \subitem {g\_tracer\_get\_2d\_val}, \hyperpage{3233}
    \subitem {g\_tracer\_get\_3d\_val}, \hyperpage{3233}
    \subitem {g\_tracer\_get\_4d\_val}, \hyperpage{3234}
    \subitem {g\_tracer\_get\_real}, \hyperpage{3235}
    \subitem {g\_tracer\_get\_string}, \hyperpage{3235}
  \item {g\_tracer\_utils::g\_tracer\_set\_values}, \hyperpage{3235}
    \subitem {g\_tracer\_set\_2d}, \hyperpage{3236}
    \subitem {g\_tracer\_set\_3d}, \hyperpage{3236}
    \subitem {g\_tracer\_set\_4d}, \hyperpage{3237}
    \subitem {g\_tracer\_set\_real}, \hyperpage{3238}
  \item {g\_tracer\_utils::g\_tracer\_type}, \hyperpage{3238}
  \item {g\_tracer\_vertdiff\_g}
    \subitem {g\_tracer\_utils}, \hyperpage{290}
  \item {generic\_tracer}, \hyperpage{291}
    \subitem {generic\_tracer\_coupler\_accumulate}, \hyperpage{292}
    \subitem {generic\_tracer\_coupler\_get}, \hyperpage{292}
    \subitem {generic\_tracer\_coupler\_set}, \hyperpage{292}
    \subitem {generic\_tracer\_get\_diag\_list}, \hyperpage{293}
    \subitem {generic\_tracer\_get\_list}, \hyperpage{293}
    \subitem {generic\_tracer\_init}, \hyperpage{294}
    \subitem {generic\_tracer\_source}, \hyperpage{295}
    \subitem {generic\_tracer\_update\_from\_bottom}, \hyperpage{296}
    \subitem {generic\_tracer\_vertdiff\_g}, \hyperpage{296}
  \item {generic\_tracer\_coupler\_accumulate}
    \subitem {generic\_tracer}, \hyperpage{292}
  \item {generic\_tracer\_coupler\_get}
    \subitem {generic\_tracer}, \hyperpage{292}
  \item {generic\_tracer\_coupler\_set}
    \subitem {generic\_tracer}, \hyperpage{292}
  \item {generic\_tracer\_get\_diag\_list}
    \subitem {generic\_tracer}, \hyperpage{293}
  \item {generic\_tracer\_get\_list}
    \subitem {generic\_tracer}, \hyperpage{293}
  \item {generic\_tracer\_init}
    \subitem {generic\_tracer}, \hyperpage{294}
  \item {generic\_tracer\_source}
    \subitem {generic\_tracer}, \hyperpage{295}
  \item {generic\_tracer\_update\_from\_bottom}
    \subitem {generic\_tracer}, \hyperpage{296}
  \item {generic\_tracer\_vertdiff\_g}
    \subitem {generic\_tracer}, \hyperpage{296}
  \item {geothermal\_end}
    \subitem {mom\_geothermal}, \hyperpage{1474}
  \item {geothermal\_entraining}
    \subitem {mom\_geothermal}, \hyperpage{1474}
  \item {geothermal\_in\_place}
    \subitem {mom\_geothermal}, \hyperpage{1479}
  \item {geothermal\_init}
    \subitem {mom\_geothermal}, \hyperpage{1481}
  \item {get\_ale\_sponge\_nz\_data}
    \subitem {mom\_ale\_sponge}, \hyperpage{428}
  \item {get\_ale\_sponge\_thicknesses}
    \subitem {mom\_ale\_sponge}, \hyperpage{428}
  \item {get\_checksum\_loop\_ranges}
    \subitem {mom\_restart}, \hyperpage{2227}
  \item {get\_chl\_from\_model}
    \subitem {mom\_tracer\_flow\_control}, \hyperpage{2580}
  \item {get\_depth\_list\_checksums}
    \subitem {mom\_sum\_output}, \hyperpage{2430}
  \item {get\_diag\_time\_end}
    \subitem {mom\_diag\_mediator}, \hyperpage{954}
  \item {get\_domain\_extent}
    \subitem {mom\_domains}, \hyperpage{1108}
  \item {get\_domain\_extent\_dsamp2}
    \subitem {mom\_domains}, \hyperpage{1109}
  \item {get\_flux\_units}
    \subitem {mom\_verticalgrid}, \hyperpage{2680}
  \item {get\_forcing\_groups}
    \subitem {mom\_forcing\_type}, \hyperpage{1430}
  \item {get\_global\_grid\_size}
    \subitem {mom\_grid}, \hyperpage{1487}
  \item {get\_global\_shape}
    \subitem {mom\_domains}, \hyperpage{1110}
  \item {get\_langmuir\_number}
    \subitem {mom\_wave\_interface}, \hyperpage{2689}
  \item {get\_lowmode\_loss}
    \subitem {mom\_internal\_tides}, \hyperpage{1671}
  \item {get\_mech\_forcing\_groups}
    \subitem {mom\_forcing\_type}, \hyperpage{1431}
  \item {get\_mom\_input}
    \subitem {mom\_get\_input}, \hyperpage{1483}
  \item {get\_mom\_state\_elements}
    \subitem {mom}, \hyperpage{358}
  \item {get\_net\_mass\_forcing}
    \subitem {mom\_forcing\_type}, \hyperpage{1432}
  \item {get\_new\_diag\_id}
    \subitem {mom\_diag\_mediator}, \hyperpage{954}
  \item {get\_ocean\_grid}
    \subitem {ocean\_model\_mod}, \hyperpage{2758}
  \item {get\_ocean\_stocks}
    \subitem {mom}, \hyperpage{359}
  \item {get\_param\_char}
    \subitem {mom\_file\_parser}, \hyperpage{1353}
    \subitem {mom\_file\_parser::get\_param}, \hyperpage{3242}
  \item {get\_param\_char\_array}
    \subitem {mom\_file\_parser}, \hyperpage{1354}
    \subitem {mom\_file\_parser::get\_param}, \hyperpage{3243}
  \item {get\_param\_int}
    \subitem {mom\_file\_parser}, \hyperpage{1355}
    \subitem {mom\_file\_parser::get\_param}, \hyperpage{3244}
  \item {get\_param\_int\_array}
    \subitem {mom\_file\_parser}, \hyperpage{1357}
    \subitem {mom\_file\_parser::get\_param}, \hyperpage{3246}
  \item {get\_param\_logical}
    \subitem {mom\_file\_parser}, \hyperpage{1358}
    \subitem {mom\_file\_parser::get\_param}, \hyperpage{3247}
  \item {get\_param\_real}
    \subitem {mom\_file\_parser}, \hyperpage{1359}
    \subitem {mom\_file\_parser::get\_param}, \hyperpage{3248}
  \item {get\_param\_real\_array}
    \subitem {mom\_file\_parser}, \hyperpage{1361}
    \subitem {mom\_file\_parser::get\_param}, \hyperpage{3250}
  \item {get\_param\_time}
    \subitem {mom\_file\_parser}, \hyperpage{1362}
    \subitem {mom\_file\_parser::get\_param}, \hyperpage{3251}
  \item {get\_polynomial\_coordinate}
    \subitem {regrid\_interp}, \hyperpage{2872}
  \item {get\_posterior\_tracer}
    \subitem {mom\_oda\_driver\_mod}, \hyperpage{1930}
  \item {get\_profiles}
    \subitem {ocean\_da\_core\_mod}, \hyperpage{2754}
  \item {get\_regrid\_size}
    \subitem {mom\_regridding}, \hyperpage{2153}
  \item {get\_rho\_cs}
    \subitem {mom\_regridding}, \hyperpage{2153}
  \item {get\_sigma\_cs}
    \subitem {mom\_regridding}, \hyperpage{2154}
  \item {get\_simple\_array\_i\_ind}
    \subitem {mom\_domains}, \hyperpage{1111}
  \item {get\_simple\_array\_j\_ind}
    \subitem {mom\_domains}, \hyperpage{1111}
  \item {get\_sl\_average\_band}
    \subitem {mom\_wave\_interface}, \hyperpage{2691}
  \item {get\_sl\_average\_prof}
    \subitem {mom\_wave\_interface}, \hyperpage{2691}
  \item {get\_stokessl\_lifoxkemper}
    \subitem {mom\_wave\_interface}, \hyperpage{2692}
  \item {get\_thickness\_units}
    \subitem {mom\_verticalgrid}, \hyperpage{2681}
  \item {get\_tr\_flux\_units}
    \subitem {mom\_verticalgrid}, \hyperpage{2681}
  \item {get\_variable\_line}
    \subitem {mom\_file\_parser}, \hyperpage{1364}
  \item {get\_zlike\_cs}
    \subitem {mom\_regridding}, \hyperpage{2154}
  \item {getcoordinateinterfaces}
    \subitem {mom\_regridding}, \hyperpage{2154}
  \item {getcoordinateresolution}
    \subitem {mom\_regridding}, \hyperpage{2155}
  \item {getcoordinateshortname}
    \subitem {mom\_regridding}, \hyperpage{2155}
  \item {getcoordinateunits}
    \subitem {mom\_regridding}, \hyperpage{2156}
  \item {getstaticthickness}
    \subitem {mom\_regridding}, \hyperpage{2156}
  \item {global\_area\_integral}
    \subitem {mom\_spatial\_means}, \hyperpage{2354}
  \item {global\_area\_mean}
    \subitem {mom\_spatial\_means}, \hyperpage{2355}
  \item {global\_i\_mean}
    \subitem {mom\_spatial\_means}, \hyperpage{2355}
  \item {global\_j\_mean}
    \subitem {mom\_spatial\_means}, \hyperpage{2357}
  \item {global\_layer\_mean}
    \subitem {mom\_spatial\_means}, \hyperpage{2358}
  \item {global\_mass\_integral}
    \subitem {mom\_spatial\_means}, \hyperpage{2359}
  \item {global\_volume\_mean}
    \subitem {mom\_spatial\_means}, \hyperpage{2360}
  \item {gradient\_at\_q\_points}
    \subitem {mom\_open\_boundary}, \hyperpage{2008}
  \item {gradke}
    \subitem {mom\_coriolisadv}, \hyperpage{741}
  \item {grid\_metrics\_chksum}
    \subitem {mom\_grid\_initialize}, \hyperpage{1501}

  \indexspace

  \item {harmonic\_mean}
    \subitem {mom\_lateral\_boundary\_diffusion}, \hyperpage{1780}
  \item {heat\_0}
    \subitem {mom\_controlled\_forcing::ctrl\_forcing\_cs}, 
		\hyperpage{3119}
  \item {heat\_cyc}
    \subitem {mom\_controlled\_forcing::ctrl\_forcing\_cs}, 
		\hyperpage{3119}
  \item {henyey\_igw\_background\_new}
    \subitem {mom\_bkgnd\_mixing::bkgnd\_mixing\_cs}, \hyperpage{2999}
  \item {hit\_assign}
    \subitem {mom\_hor\_index}, \hyperpage{1517}
    \subitem {mom\_hor\_index::assignment(=)}, \hyperpage{2973}
  \item {hml}
    \subitem {rossby\_front\_2d\_initialization}, \hyperpage{2893}
  \item {hneglect\_dflt}
    \subitem {ppm\_functions}, \hyperpage{2816}
  \item {hor\_index\_init}
    \subitem {mom\_hor\_index}, \hyperpage{1517}
  \item {hor\_visc\_end}
    \subitem {mom\_hor\_visc}, \hyperpage{1523}
  \item {hor\_visc\_init}
    \subitem {mom\_hor\_visc}, \hyperpage{1524}
  \item {horiz\_interp\_and\_extrap\_tracer\_fms\_id}
    \subitem {mom\_horizontal\_regridding}, \hyperpage{1556}
    \subitem {mom\_horizontal\_regridding::horiz\_interp\_and\_extrap\_tracer}, 
		\hyperpage{3271}
  \item {horiz\_interp\_and\_extrap\_tracer\_record}
    \subitem {mom\_horizontal\_regridding}, \hyperpage{1560}
    \subitem {mom\_horizontal\_regridding::horiz\_interp\_and\_extrap\_tracer}, 
		\hyperpage{3276}
  \item {horizontal\_viscosity}
    \subitem {mom\_hor\_visc}, \hyperpage{1534}
  \item {horizontally\_average\_diag\_field}
    \subitem {mom\_diag\_remap}, \hyperpage{1002}

  \indexspace

  \item {i2s}
    \subitem {mom\_diag\_mediator}, \hyperpage{955}
  \item {ice\_shelf\_advect}
    \subitem {mom\_ice\_shelf\_dynamics}, \hyperpage{1612}
  \item {ice\_shelf\_advect\_temp\_x}
    \subitem {mom\_ice\_shelf\_dynamics}, \hyperpage{1613}
  \item {ice\_shelf\_advect\_temp\_y}
    \subitem {mom\_ice\_shelf\_dynamics}, \hyperpage{1616}
  \item {ice\_shelf\_advect\_thickness\_x}
    \subitem {mom\_ice\_shelf\_dynamics}, \hyperpage{1618}
  \item {ice\_shelf\_advect\_thickness\_y}
    \subitem {mom\_ice\_shelf\_dynamics}, \hyperpage{1620}
  \item {ice\_shelf\_dyn\_end}
    \subitem {mom\_ice\_shelf\_dynamics}, \hyperpage{1621}
  \item {ice\_shelf\_end}
    \subitem {mom\_ice\_shelf}, \hyperpage{1576}
  \item {ice\_shelf\_min\_thickness\_calve}
    \subitem {mom\_ice\_shelf\_dynamics}, \hyperpage{1622}
  \item {ice\_shelf\_save\_restart}
    \subitem {mom\_ice\_shelf}, \hyperpage{1577}
  \item {ice\_shelf\_solve\_inner}
    \subitem {mom\_ice\_shelf\_dynamics}, \hyperpage{1622}
  \item {ice\_shelf\_solve\_outer}
    \subitem {mom\_ice\_shelf\_dynamics}, \hyperpage{1627}
  \item {ice\_shelf\_state\_end}
    \subitem {mom\_ice\_shelf\_state}, \hyperpage{1656}
  \item {ice\_shelf\_state\_init}
    \subitem {mom\_ice\_shelf\_state}, \hyperpage{1657}
  \item {ice\_shelf\_temp}
    \subitem {mom\_ice\_shelf\_dynamics}, \hyperpage{1630}
  \item {ice\_time\_step\_cfl}
    \subitem {mom\_ice\_shelf\_dynamics}, \hyperpage{1632}
  \item {iceberg\_fluxes}
    \subitem {mom\_marine\_ice}, \hyperpage{1811}
  \item {iceberg\_forces}
    \subitem {mom\_marine\_ice}, \hyperpage{1812}
  \item {id\_clock\_eos}
    \subitem {mom\_regularize\_layers}, \hyperpage{2188}
  \item {id\_clock\_pass}
    \subitem {mom\_regularize\_layers}, \hyperpage{2188}
  \item {ideal\_age\_example}, \hyperpage{297}
    \subitem {ideal\_age\_example\_end}, \hyperpage{298}
    \subitem {ideal\_age\_stock}, \hyperpage{298}
    \subitem {ideal\_age\_tracer\_column\_physics}, \hyperpage{299}
    \subitem {ideal\_age\_tracer\_surface\_state}, \hyperpage{301}
    \subitem {initialize\_ideal\_age\_tracer}, \hyperpage{302}
    \subitem {register\_ideal\_age\_tracer}, \hyperpage{303}
  \item {ideal\_age\_example::ideal\_age\_tracer\_cs}, \hyperpage{3295}
  \item {ideal\_age\_example\_end}
    \subitem {ideal\_age\_example}, \hyperpage{298}
  \item {ideal\_age\_stock}
    \subitem {ideal\_age\_example}, \hyperpage{298}
  \item {ideal\_age\_tracer\_column\_physics}
    \subitem {ideal\_age\_example}, \hyperpage{299}
  \item {ideal\_age\_tracer\_surface\_state}
    \subitem {ideal\_age\_example}, \hyperpage{301}
  \item {idealized\_hurricane}, \hyperpage{305}
    \subitem {idealized\_hurricane\_wind\_forcing}, \hyperpage{306}
    \subitem {idealized\_hurricane\_wind\_init}, \hyperpage{308}
    \subitem {idealized\_hurricane\_wind\_profile}, \hyperpage{310}
    \subitem {scm\_idealized\_hurricane\_wind\_forcing}, 
		\hyperpage{312}
  \item {idealized\_hurricane::idealized\_hurricane\_cs}, 
		\hyperpage{3297}
  \item {idealized\_hurricane\_wind\_forcing}
    \subitem {idealized\_hurricane}, \hyperpage{306}
  \item {idealized\_hurricane\_wind\_init}
    \subitem {idealized\_hurricane}, \hyperpage{308}
  \item {idealized\_hurricane\_wind\_profile}
    \subitem {idealized\_hurricane}, \hyperpage{310}
  \item {increment\_interface}
    \subitem {mom\_neutral\_diffusion}, \hyperpage{1875}
  \item {increment\_ints}
    \subitem {mom\_coms}, \hyperpage{647}
  \item {increment\_ints\_faster}
    \subitem {mom\_coms}, \hyperpage{648}
  \item {inflate\_vanished\_layers\_old}
    \subitem {mom\_regridding}, \hyperpage{2157}
  \item {init\_ale\_sponge\_diags}
    \subitem {mom\_ale\_sponge}, \hyperpage{429}
  \item {init\_boundary\_values}
    \subitem {mom\_ice\_shelf\_dynamics}, \hyperpage{1633}
  \item {init\_coord\_adapt}
    \subitem {coord\_adapt}, \hyperpage{198}
  \item {init\_coord\_hycom}
    \subitem {coord\_hycom}, \hyperpage{202}
  \item {init\_coord\_rho}
    \subitem {coord\_rho}, \hyperpage{210}
  \item {init\_coord\_sigma}
    \subitem {coord\_sigma}, \hyperpage{213}
  \item {init\_coord\_slight}
    \subitem {coord\_slight}, \hyperpage{219}
  \item {init\_coord\_zlike}
    \subitem {coord\_zlike}, \hyperpage{228}
  \item {init\_ocean\_ensemble}
    \subitem {mom\_oda\_driver\_mod}, \hyperpage{1931}
  \item {init\_oda}
    \subitem {mom\_oda\_driver\_mod}, \hyperpage{1931}
  \item {init\_sponge\_diags}
    \subitem {mom\_sponge}, \hyperpage{2366}
  \item {init\_tracer\_cfc}
    \subitem {mom\_ocmip2\_cfc}, \hyperpage{1919}
  \item {initcoord}
    \subitem {mom\_regridding}, \hyperpage{2158}
  \item {initialize\_advection\_test\_tracer}
    \subitem {advection\_test\_tracer}, \hyperpage{156}
  \item {initialize\_ale\_sponge\_fixed}
    \subitem {mom\_ale\_sponge}, \hyperpage{429}
    \subitem {mom\_ale\_sponge::initialize\_ale\_sponge}, 
		\hyperpage{3299}
  \item {initialize\_ale\_sponge\_varying}
    \subitem {mom\_ale\_sponge}, \hyperpage{432}
    \subitem {mom\_ale\_sponge::initialize\_ale\_sponge}, 
		\hyperpage{3302}
  \item {initialize\_boundary\_impulse\_tracer}
    \subitem {boundary\_impulse\_tracer}, \hyperpage{190}
  \item {initialize\_diag\_type}
    \subitem {mom\_diag\_mediator}, \hyperpage{956}
  \item {initialize\_diagnostic\_fields}
    \subitem {mom\_ice\_shelf\_dynamics}, \hyperpage{1634}
  \item {initialize\_dome\_tracer}
    \subitem {dome\_tracer}, \hyperpage{252}
  \item {initialize\_dye\_tracer}
    \subitem {regional\_dyes}, \hyperpage{2840}
  \item {initialize\_dyed\_obc\_tracer}
    \subitem {dyed\_obc\_tracer}, \hyperpage{273}
  \item {initialize\_dyn\_split\_rk2}
    \subitem {mom\_dynamics\_split\_rk2}, \hyperpage{1141}
  \item {initialize\_dyn\_unsplit}
    \subitem {mom\_dynamics\_unsplit}, \hyperpage{1160}
  \item {initialize\_dyn\_unsplit\_rk2}
    \subitem {mom\_dynamics\_unsplit\_rk2}, \hyperpage{1170}
  \item {initialize\_grid\_rotation\_angle}
    \subitem {mom\_shared\_initialization}, \hyperpage{2333}
  \item {initialize\_ice\_shelf}
    \subitem {mom\_ice\_shelf}, \hyperpage{1577}
  \item {initialize\_ice\_shelf\_dyn}
    \subitem {mom\_ice\_shelf\_dynamics}, \hyperpage{1635}
  \item {initialize\_ice\_thickness}
    \subitem {mom\_ice\_shelf\_initialize}, \hyperpage{1652}
  \item {initialize\_ice\_thickness\_channel}
    \subitem {mom\_ice\_shelf\_initialize}, \hyperpage{1653}
  \item {initialize\_ice\_thickness\_from\_file}
    \subitem {mom\_ice\_shelf\_initialize}, \hyperpage{1654}
  \item {initialize\_ideal\_age\_tracer}
    \subitem {ideal\_age\_example}, \hyperpage{302}
  \item {initialize\_isomip\_tracer}
    \subitem {isomip\_tracer}, \hyperpage{326}
  \item {initialize\_masks}
    \subitem {mom\_grid\_initialize}, \hyperpage{1502}
  \item {initialize\_mom}
    \subitem {mom}, \hyperpage{359}
  \item {initialize\_mom\_generic\_tracer}
    \subitem {mom\_generic\_tracer}, \hyperpage{1460}
  \item {initialize\_obc\_tides}
    \subitem {mom\_open\_boundary}, \hyperpage{2010}
  \item {initialize\_ocean\_public\_type}
    \subitem {ocean\_model\_mod}, \hyperpage{2758}
  \item {initialize\_ocmip2\_cfc}
    \subitem {mom\_ocmip2\_cfc}, \hyperpage{1920}
  \item {initialize\_oil\_tracer}
    \subitem {oil\_tracer}, \hyperpage{2774}
  \item {initialize\_pseudo\_salt\_tracer}
    \subitem {pseudo\_salt\_tracer}, \hyperpage{2830}
  \item {initialize\_regridding}
    \subitem {mom\_regridding}, \hyperpage{2159}
  \item {initialize\_remapping}
    \subitem {mom\_remapping}, \hyperpage{2198}
  \item {initialize\_rgc\_tracer}
    \subitem {rgc\_tracer}, \hyperpage{2886}
  \item {initialize\_segment\_data}
    \subitem {mom\_open\_boundary}, \hyperpage{2012}
  \item {initialize\_shelf\_mass}
    \subitem {mom\_ice\_shelf}, \hyperpage{1585}
  \item {initialize\_sponge}
    \subitem {mom\_sponge}, \hyperpage{2366}
  \item {initialize\_sponges\_file}
    \subitem {mom\_state\_initialization}, \hyperpage{2381}
  \item {initialize\_temp\_salt\_fit}
    \subitem {mom\_state\_initialization}, \hyperpage{2384}
  \item {initialize\_temp\_salt\_from\_file}
    \subitem {mom\_state\_initialization}, \hyperpage{2386}
  \item {initialize\_temp\_salt\_from\_profile}
    \subitem {mom\_state\_initialization}, \hyperpage{2387}
  \item {initialize\_temp\_salt\_linear}
    \subitem {mom\_state\_initialization}, \hyperpage{2388}
  \item {initialize\_thickness\_from\_file}
    \subitem {mom\_state\_initialization}, \hyperpage{2389}
  \item {initialize\_thickness\_list}
    \subitem {mom\_state\_initialization}, \hyperpage{2391}
  \item {initialize\_thickness\_uniform}
    \subitem {mom\_state\_initialization}, \hyperpage{2392}
  \item {initialize\_topography\_from\_file}
    \subitem {mom\_shared\_initialization}, \hyperpage{2334}
  \item {initialize\_topography\_named}
    \subitem {mom\_shared\_initialization}, \hyperpage{2335}
  \item {initialize\_velocity\_circular}
    \subitem {mom\_state\_initialization}, \hyperpage{2393}
  \item {initialize\_velocity\_from\_file}
    \subitem {mom\_state\_initialization}, \hyperpage{2394}
  \item {initialize\_velocity\_uniform}
    \subitem {mom\_state\_initialization}, \hyperpage{2395}
  \item {initialize\_velocity\_zero}
    \subitem {mom\_state\_initialization}, \hyperpage{2396}
  \item {input}
    \subitem {mom\_wave\_interface}, \hyperpage{2708}
  \item {insert\_offline\_main}
    \subitem {mom\_offline\_main}, \hyperpage{1956}
  \item {int\_density\_dz}
    \subitem {mom\_density\_integrals}, \hyperpage{806}
  \item {int\_density\_dz\_generic\_pcm}
    \subitem {mom\_density\_integrals}, \hyperpage{808}
  \item {int\_density\_dz\_generic\_plm}
    \subitem {mom\_density\_integrals}, \hyperpage{811}
  \item {int\_density\_dz\_generic\_ppm}
    \subitem {mom\_density\_integrals}, \hyperpage{817}
  \item {int\_density\_dz\_linear}
    \subitem {mom\_eos\_linear}, \hyperpage{1297}
  \item {int\_density\_dz\_wright}
    \subitem {mom\_eos\_wright}, \hyperpage{1334}
  \item {int\_di\_dx}
    \subitem {mom\_grid\_initialize}, \hyperpage{1504}
  \item {int\_dj\_dy}
    \subitem {mom\_grid\_initialize}, \hyperpage{1504}
  \item {int\_spec\_vol\_dp\_generic\_pcm}
    \subitem {mom\_density\_integrals}, \hyperpage{822}
  \item {int\_spec\_vol\_dp\_generic\_plm}
    \subitem {mom\_density\_integrals}, \hyperpage{826}
  \item {int\_spec\_vol\_dp\_linear}
    \subitem {mom\_eos\_linear}, \hyperpage{1300}
  \item {int\_spec\_vol\_dp\_wright}
    \subitem {mom\_eos\_wright}, \hyperpage{1338}
  \item {int\_specific\_vol\_dp}
    \subitem {mom\_density\_integrals}, \hyperpage{830}
  \item {int\_string}
    \subitem {mom\_document}, \hyperpage{1086}
  \item {int\_tide\_input\_end}
    \subitem {mom\_int\_tide\_input}, \hyperpage{1660}
  \item {int\_tide\_input\_init}
    \subitem {mom\_int\_tide\_input}, \hyperpage{1660}
  \item {integraterecononinterval}
    \subitem {mom\_remapping}, \hyperpage{2198}
  \item {integration\_polynomial}
    \subitem {polynomial\_functions}, \hyperpage{2811}
  \item {interface\_scalar}
    \subitem {mom\_neutral\_diffusion}, \hyperpage{1876}
  \item {internal\_tides\_end}
    \subitem {mom\_internal\_tides}, \hyperpage{1671}
  \item {internal\_tides\_init}
    \subitem {mom\_internal\_tides}, \hyperpage{1672}
  \item {interpolate\_column}
    \subitem {mom\_diag\_vkernels}, \hyperpage{1010}
  \item {interpolate\_for\_nondim\_position}
    \subitem {mom\_neutral\_diffusion}, \hyperpage{1877}
  \item {interpolate\_grid}
    \subitem {regrid\_interp}, \hyperpage{2875}
  \item {interpolate\_h\_to\_b}
    \subitem {mom\_ice\_shelf\_dynamics}, \hyperpage{1639}
  \item {interpolation\_scheme}
    \subitem {regrid\_interp}, \hyperpage{2876}
  \item {ints\_to\_real}
    \subitem {mom\_coms}, \hyperpage{648}
  \item {invcosh}
    \subitem {mom\_intrinsic\_functions}, \hyperpage{1709}
  \item {is\_cubic\_monotonic}
    \subitem {p3m\_functions}, \hyperpage{2787}
  \item {is\_nan\_0d}
    \subitem {mom\_checksums}, \hyperpage{637}
    \subitem {mom\_checksums::is\_nan}, \hyperpage{3312}
  \item {is\_nan\_1d}
    \subitem {mom\_checksums}, \hyperpage{638}
    \subitem {mom\_checksums::is\_nan}, \hyperpage{3313}
  \item {is\_nan\_2d}
    \subitem {mom\_checksums}, \hyperpage{638}
    \subitem {mom\_checksums::is\_nan}, \hyperpage{3313}
  \item {is\_nan\_3d}
    \subitem {mom\_checksums}, \hyperpage{638}
    \subitem {mom\_checksums::is\_nan}, \hyperpage{3313}
  \item {is\_new\_run}
    \subitem {mom\_restart}, \hyperpage{2228}
  \item {is\_unstable}
    \subitem {mom\_full\_convection}, \hyperpage{1455}
  \item {isd}
    \subitem {g\_tracer\_utils::g\_tracer\_common}, \hyperpage{3230}
  \item {isformattedfloatequalto}
    \subitem {mom\_string\_functions}, \hyperpage{2417}
  \item {isomip\_initialization}, \hyperpage{315}
    \subitem {isomip\_initialize\_sponges}, \hyperpage{315}
    \subitem {isomip\_initialize\_temperature\_salinity}, 
		\hyperpage{319}
    \subitem {isomip\_initialize\_thickness}, \hyperpage{322}
    \subitem {isomip\_initialize\_topography}, \hyperpage{324}
  \item {isomip\_initialize\_sponges}
    \subitem {isomip\_initialization}, \hyperpage{315}
  \item {isomip\_initialize\_temperature\_salinity}
    \subitem {isomip\_initialization}, \hyperpage{319}
  \item {isomip\_initialize\_thickness}
    \subitem {isomip\_initialization}, \hyperpage{322}
  \item {isomip\_initialize\_topography}
    \subitem {isomip\_initialization}, \hyperpage{324}
  \item {isomip\_tracer}, \hyperpage{325}
    \subitem {initialize\_isomip\_tracer}, \hyperpage{326}
    \subitem {isomip\_tracer\_column\_physics}, \hyperpage{327}
    \subitem {isomip\_tracer\_end}, \hyperpage{329}
    \subitem {isomip\_tracer\_surface\_state}, \hyperpage{329}
    \subitem {register\_isomip\_tracer}, \hyperpage{330}
  \item {isomip\_tracer::isomip\_tracer\_cs}, \hyperpage{3314}
  \item {isomip\_tracer\_column\_physics}
    \subitem {isomip\_tracer}, \hyperpage{327}
  \item {isomip\_tracer\_end}
    \subitem {isomip\_tracer}, \hyperpage{329}
  \item {isomip\_tracer\_surface\_state}
    \subitem {isomip\_tracer}, \hyperpage{329}
  \item {ispointincell}
    \subitem {mom\_grid}, \hyperpage{1487}
  \item {ispossumerrsignificant}
    \subitem {mom\_remapping}, \hyperpage{2203}
  \item {itidal\_lowmode\_loss}
    \subitem {mom\_internal\_tides}, \hyperpage{1678}

  \indexspace

  \item {kappa\_shear\_at\_vertex}
    \subitem {mom\_kappa\_shear}, \hyperpage{1757}
  \item {kappa\_shear\_column}
    \subitem {mom\_kappa\_shear}, \hyperpage{1758}
  \item {kappa\_shear\_init}
    \subitem {mom\_kappa\_shear}, \hyperpage{1765}
  \item {kappa\_shear\_is\_used}
    \subitem {mom\_kappa\_shear}, \hyperpage{1767}
  \item {kdtree}, \hyperpage{332}
  \item {kdtree::kd\_root}, \hyperpage{3319}
  \item {kelvin\_initialization}, \hyperpage{332}
    \subitem {kelvin\_initialize\_topography}, \hyperpage{332}
    \subitem {kelvin\_obc\_end}, \hyperpage{334}
    \subitem {kelvin\_set\_obc\_data}, \hyperpage{335}
    \subitem {register\_kelvin\_obc}, \hyperpage{337}
  \item {kelvin\_initialization::kelvin\_obc\_cs}, \hyperpage{3320}
  \item {kelvin\_initialize\_topography}
    \subitem {kelvin\_initialization}, \hyperpage{332}
  \item {kelvin\_obc\_end}
    \subitem {kelvin\_initialization}, \hyperpage{334}
  \item {kelvin\_set\_obc\_data}
    \subitem {kelvin\_initialization}, \hyperpage{335}
  \item {kpp\_calculate}
    \subitem {mom\_cvmix\_kpp}, \hyperpage{756}
  \item {kpp\_compute\_bld}
    \subitem {mom\_cvmix\_kpp}, \hyperpage{760}
  \item {kpp\_end}
    \subitem {mom\_cvmix\_kpp}, \hyperpage{766}
  \item {kpp\_get\_bld}
    \subitem {mom\_cvmix\_kpp}, \hyperpage{766}
  \item {kpp\_init}
    \subitem {mom\_cvmix\_kpp}, \hyperpage{767}
  \item {kpp\_nonlocaltransport\_saln}
    \subitem {mom\_cvmix\_kpp}, \hyperpage{772}
  \item {kpp\_nonlocaltransport\_temp}
    \subitem {mom\_cvmix\_kpp}, \hyperpage{774}
  \item {kpp\_smooth\_bld}
    \subitem {mom\_cvmix\_kpp}, \hyperpage{775}

  \indexspace

  \item {la\_frachbl}
    \subitem {mom\_wave\_interface}, \hyperpage{2708}
  \item {la\_misalignment}
    \subitem {mom\_wave\_interface}, \hyperpage{2708}
  \item {lastnoncommentindex}
    \subitem {mom\_file\_parser}, \hyperpage{1368}
  \item {lastnoncommentnonblank}
    \subitem {mom\_file\_parser}, \hyperpage{1368}
  \item {lateral\_boundary\_diffusion}
    \subitem {mom\_lateral\_boundary\_diffusion}, \hyperpage{1780}
  \item {lateral\_boundary\_diffusion\_init}
    \subitem {mom\_lateral\_boundary\_diffusion}, \hyperpage{1783}
  \item {layered\_diabatic}
    \subitem {mom\_diabatic\_driver}, \hyperpage{898}
  \item {left\_int}
    \subitem {mom\_string\_functions}, \hyperpage{2418}
  \item {left\_ints}
    \subitem {mom\_string\_functions}, \hyperpage{2418}
  \item {left\_real}
    \subitem {mom\_string\_functions}, \hyperpage{2419}
  \item {left\_reals}
    \subitem {mom\_string\_functions}, \hyperpage{2419}
  \item {lf17}
    \subitem {mom\_wave\_interface}, \hyperpage{2708}
  \item {limit\_mass\_flux\_3d}
    \subitem {mom\_offline\_aux}, \hyperpage{1943}
  \item {limit\_topography}
    \subitem {mom\_shared\_initialization}, \hyperpage{2337}
  \item {linear\_solver}
    \subitem {regrid\_edge\_values}, \hyperpage{2867}
    \subitem {regrid\_solvers}, \hyperpage{2881}
  \item {localtesti}
    \subitem {mom\_string\_functions}, \hyperpage{2420}
  \item {localtestr}
    \subitem {mom\_string\_functions}, \hyperpage{2421}
  \item {localtests}
    \subitem {mom\_string\_functions}, \hyperpage{2421}
  \item {lock\_exchange\_initialization}, \hyperpage{338}
    \subitem {lock\_exchange\_initialize\_thickness}, \hyperpage{339}
  \item {lock\_exchange\_initialize\_thickness}
    \subitem {lock\_exchange\_initialization}, \hyperpage{339}
  \item {lock\_tracer\_registry}
    \subitem {mom\_tracer\_registry}, \hyperpage{2609}
  \item {log\_available\_diag}
    \subitem {mom\_diag\_mediator}, \hyperpage{956}
  \item {log\_chksum\_diag}
    \subitem {mom\_diag\_mediator}, \hyperpage{957}
  \item {log\_param\_char}
    \subitem {mom\_file\_parser}, \hyperpage{1369}
    \subitem {mom\_file\_parser::log\_param}, \hyperpage{3334}
  \item {log\_param\_int}
    \subitem {mom\_file\_parser}, \hyperpage{1370}
    \subitem {mom\_file\_parser::log\_param}, \hyperpage{3335}
  \item {log\_param\_int\_array}
    \subitem {mom\_file\_parser}, \hyperpage{1371}
    \subitem {mom\_file\_parser::log\_param}, \hyperpage{3336}
  \item {log\_param\_logical}
    \subitem {mom\_file\_parser}, \hyperpage{1372}
    \subitem {mom\_file\_parser::log\_param}, \hyperpage{3337}
  \item {log\_param\_real}
    \subitem {mom\_file\_parser}, \hyperpage{1373}
    \subitem {mom\_file\_parser::log\_param}, \hyperpage{3338}
  \item {log\_param\_real\_array}
    \subitem {mom\_file\_parser}, \hyperpage{1374}
    \subitem {mom\_file\_parser::log\_param}, \hyperpage{3339}
  \item {log\_param\_time}
    \subitem {mom\_file\_parser}, \hyperpage{1375}
    \subitem {mom\_file\_parser::log\_param}, \hyperpage{3340}
  \item {log\_version\_cs}
    \subitem {mom\_file\_parser}, \hyperpage{1377}
    \subitem {mom\_file\_parser::log\_version}, \hyperpage{3342}
  \item {log\_version\_plain}
    \subitem {mom\_file\_parser}, \hyperpage{1377}
    \subitem {mom\_file\_parser::log\_version}, \hyperpage{3343}
  \item {logical\_string}
    \subitem {mom\_document}, \hyperpage{1087}
  \item {lookup\_seg\_field}
    \subitem {mom\_open\_boundary}, \hyperpage{2016}
  \item {lowercase}
    \subitem {mom\_string\_functions}, \hyperpage{2422}

  \indexspace

  \item {make\_frazil}
    \subitem {mom\_diabatic\_aux}, \hyperpage{853}
  \item {marine\_ice\_init}
    \subitem {mom\_marine\_ice}, \hyperpage{1813}
  \item {mark\_unstable\_cells}
    \subitem {mom\_neutral\_diffusion}, \hyperpage{1877}
  \item {mask\_outside\_obcs}
    \subitem {mom\_open\_boundary}, \hyperpage{2016}
  \item {matrix\_diagonal}
    \subitem {mom\_ice\_shelf\_dynamics}, \hyperpage{1640}
  \item {MAX\_FIELDS\_}
    \subitem {MOM\_memory.h}, \hyperpage{3684}
  \item {measure\_input\_bounds}
    \subitem {mom\_remapping}, \hyperpage{2204}
  \item {measure\_output\_bounds}
    \subitem {mom\_remapping}, \hyperpage{2205}
  \item {mech\_forcing\_diags}
    \subitem {mom\_forcing\_type}, \hyperpage{1433}
  \item {mech\_forcing\_singlepointprint}
    \subitem {mom\_forcing\_type}, \hyperpage{1434}
  \item {mechanical\_entrainment}
    \subitem {mom\_bulk\_mixed\_layer}, \hyperpage{556}
  \item {meke\_alloc\_register\_restart}
    \subitem {mom\_meke}, \hyperpage{1818}
  \item {meke\_end}
    \subitem {mom\_meke}, \hyperpage{1819}
  \item {meke\_equilibrium}
    \subitem {mom\_meke}, \hyperpage{1820}
  \item {meke\_equilibrium\_restoring}
    \subitem {mom\_meke}, \hyperpage{1822}
  \item {meke\_init}
    \subitem {mom\_meke}, \hyperpage{1823}
  \item {meke\_lengthscales}
    \subitem {mom\_meke}, \hyperpage{1828}
  \item {meke\_lengthscales\_0d}
    \subitem {mom\_meke}, \hyperpage{1830}
  \item {merid\_face\_thickness}
    \subitem {mom\_continuity\_ppm}, \hyperpage{669}
  \item {merid\_flux\_en}
    \subitem {mom\_internal\_tides}, \hyperpage{1680}
  \item {merid\_flux\_layer}
    \subitem {mom\_continuity\_ppm}, \hyperpage{671}
  \item {meridional\_flux\_adjust}
    \subitem {mom\_continuity\_ppm}, \hyperpage{673}
  \item {meridional\_mass\_flux}
    \subitem {mom\_continuity\_ppm}, \hyperpage{676}
  \item {mesghasbeendocumented}
    \subitem {mom\_document}, \hyperpage{1087}
  \item {meshgrid}
    \subitem {mom\_horizontal\_regridding}, \hyperpage{1566}
  \item {meso\_buoyancy\_forcing}
    \subitem {meso\_surface\_forcing}, \hyperpage{341}
  \item {meso\_surface\_forcing}, \hyperpage{340}
    \subitem {meso\_buoyancy\_forcing}, \hyperpage{341}
    \subitem {meso\_surface\_forcing\_init}, \hyperpage{343}
  \item {meso\_surface\_forcing::meso\_surface\_forcing\_cs}, 
		\hyperpage{3356}
  \item {meso\_surface\_forcing\_init}
    \subitem {meso\_surface\_forcing}, \hyperpage{343}
  \item {method}
    \subitem {mom\_lateral\_boundary\_diffusion::lateral\_boundary\_diffusion\_cs}, 
		\hyperpage{3328}
  \item {mixedlayer\_convection}
    \subitem {mom\_bulk\_mixed\_layer}, \hyperpage{562}
  \item {mixedlayer\_detrain\_1}
    \subitem {mom\_bulk\_mixed\_layer}, \hyperpage{569}
  \item {mixedlayer\_detrain\_2}
    \subitem {mom\_bulk\_mixed\_layer}, \hyperpage{574}
  \item {mixedlayer\_restrat}
    \subitem {mom\_mixed\_layer\_restrat}, \hyperpage{1841}
  \item {mixedlayer\_restrat\_bml}
    \subitem {mom\_mixed\_layer\_restrat}, \hyperpage{1842}
  \item {mixedlayer\_restrat\_general}
    \subitem {mom\_mixed\_layer\_restrat}, \hyperpage{1845}
  \item {mixedlayer\_restrat\_init}
    \subitem {mom\_mixed\_layer\_restrat}, \hyperpage{1851}
  \item {mixedlayer\_restrat\_register\_restarts}
    \subitem {mom\_mixed\_layer\_restrat}, \hyperpage{1854}
  \item {modify\_vardesc}
    \subitem {mom\_io}, \hyperpage{1717}
  \item {modulo\_around\_point}
    \subitem {mom\_shared\_initialization}, \hyperpage{2338}
  \item {mom}, \hyperpage{344}
    \subitem {adjust\_ssh\_for\_p\_atm}, \hyperpage{351}
    \subitem {extract\_surface\_state}, \hyperpage{352}
    \subitem {finish\_mom\_initialization}, \hyperpage{357}
    \subitem {get\_mom\_state\_elements}, \hyperpage{358}
    \subitem {get\_ocean\_stocks}, \hyperpage{359}
    \subitem {initialize\_mom}, \hyperpage{359}
    \subitem {mom\_end}, \hyperpage{374}
    \subitem {mom\_state\_is\_synchronized}, \hyperpage{375}
    \subitem {mom\_timing\_init}, \hyperpage{376}
    \subitem {register\_diags}, \hyperpage{376}
    \subitem {set\_restart\_fields}, \hyperpage{377}
    \subitem {step\_mom}, \hyperpage{378}
    \subitem {step\_mom\_dynamics}, \hyperpage{386}
    \subitem {step\_mom\_thermo}, \hyperpage{389}
    \subitem {step\_mom\_tracer\_dyn}, \hyperpage{392}
    \subitem {step\_offline}, \hyperpage{393}
  \item {mom::mom\_control\_struct}, \hyperpage{3360}
  \item {mom::mom\_diag\_ids}, \hyperpage{3367}
  \item {mom\_accel\_chksum}
    \subitem {mom\_checksum\_packages}, \hyperpage{592}
  \item {mom\_ale}, \hyperpage{396}
    \subitem {adjustgridforintegrity}, \hyperpage{398}
    \subitem {ale\_build\_grid}, \hyperpage{398}
    \subitem {ale\_end}, \hyperpage{399}
    \subitem {ale\_getcoordinate}, \hyperpage{400}
    \subitem {ale\_getcoordinateunits}, \hyperpage{400}
    \subitem {ale\_init}, \hyperpage{400}
    \subitem {ale\_initregridding}, \hyperpage{402}
    \subitem {ale\_initthicknesstocoord}, \hyperpage{403}
    \subitem {ale\_main}, \hyperpage{403}
    \subitem {ale\_main\_offline}, \hyperpage{405}
    \subitem {ale\_offline\_inputs}, \hyperpage{406}
    \subitem {ale\_offline\_tracer\_final}, \hyperpage{408}
    \subitem {ale\_plm\_edge\_values}, \hyperpage{409}
    \subitem {ale\_register\_diags}, \hyperpage{410}
    \subitem {ale\_regrid\_accelerated}, \hyperpage{411}
    \subitem {ale\_remap\_init\_conds}, \hyperpage{413}
    \subitem {ale\_remap\_scalar}, \hyperpage{413}
    \subitem {ale\_update\_regrid\_weights}, \hyperpage{415}
    \subitem {ale\_updateverticalgridtype}, \hyperpage{415}
    \subitem {ale\_writecoordinatefile}, \hyperpage{415}
    \subitem {check\_grid}, \hyperpage{416}
    \subitem {remap\_all\_state\_vars}, \hyperpage{417}
    \subitem {ts\_plm\_edge\_values}, \hyperpage{420}
    \subitem {ts\_ppm\_edge\_values}, \hyperpage{421}
  \item {mom\_ale::ale\_cs}, \hyperpage{2960}
  \item {mom\_ale\_sponge}, \hyperpage{423}
    \subitem {ale\_sponge\_end}, \hyperpage{424}
    \subitem {apply\_ale\_sponge}, \hyperpage{424}
    \subitem {get\_ale\_sponge\_nz\_data}, \hyperpage{428}
    \subitem {get\_ale\_sponge\_thicknesses}, \hyperpage{428}
    \subitem {init\_ale\_sponge\_diags}, \hyperpage{429}
    \subitem {initialize\_ale\_sponge\_fixed}, \hyperpage{429}
    \subitem {initialize\_ale\_sponge\_varying}, \hyperpage{432}
    \subitem {rotate\_ale\_sponge}, \hyperpage{434}
    \subitem {set\_up\_ale\_sponge\_field\_fixed}, \hyperpage{436}
    \subitem {set\_up\_ale\_sponge\_field\_varying}, \hyperpage{437}
    \subitem {set\_up\_ale\_sponge\_vel\_field\_fixed}, \hyperpage{438}
    \subitem {set\_up\_ale\_sponge\_vel\_field\_varying}, 
		\hyperpage{439}
    \subitem {update\_ale\_sponge\_field}, \hyperpage{441}
  \item {mom\_ale\_sponge::ale\_sponge\_cs}, \hyperpage{2963}
  \item {mom\_ale\_sponge::initialize\_ale\_sponge}, \hyperpage{3298}
    \subitem {initialize\_ale\_sponge\_fixed}, \hyperpage{3299}
    \subitem {initialize\_ale\_sponge\_varying}, \hyperpage{3302}
  \item {mom\_ale\_sponge::p2d}, \hyperpage{3447}
  \item {mom\_ale\_sponge::p3d}, \hyperpage{3453}
  \item {mom\_ale\_sponge::set\_up\_ale\_sponge\_field}, 
		\hyperpage{3567}
    \subitem {set\_up\_ale\_sponge\_field\_fixed}, \hyperpage{3567}
    \subitem {set\_up\_ale\_sponge\_field\_varying}, \hyperpage{3568}
  \item {mom\_ale\_sponge::set\_up\_ale\_sponge\_vel\_field}, 
		\hyperpage{3569}
    \subitem {set\_up\_ale\_sponge\_vel\_field\_fixed}, 
		\hyperpage{3570}
    \subitem {set\_up\_ale\_sponge\_vel\_field\_varying}, 
		\hyperpage{3571}
  \item {mom\_array\_transform}, \hyperpage{442}
    \subitem {allocate\_rotated\_array\_integer}, \hyperpage{443}
    \subitem {allocate\_rotated\_array\_real\_2d}, \hyperpage{444}
    \subitem {allocate\_rotated\_array\_real\_3d}, \hyperpage{444}
    \subitem {allocate\_rotated\_array\_real\_4d}, \hyperpage{445}
    \subitem {rotate\_array\_integer}, \hyperpage{445}
    \subitem {rotate\_array\_logical}, \hyperpage{446}
    \subitem {rotate\_array\_pair\_integer}, \hyperpage{446}
    \subitem {rotate\_array\_pair\_real\_2d}, \hyperpage{447}
    \subitem {rotate\_array\_pair\_real\_3d}, \hyperpage{447}
    \subitem {rotate\_array\_real\_2d}, \hyperpage{448}
    \subitem {rotate\_array\_real\_3d}, \hyperpage{449}
    \subitem {rotate\_array\_real\_4d}, \hyperpage{449}
    \subitem {rotate\_vector\_real\_2d}, \hyperpage{449}
    \subitem {rotate\_vector\_real\_3d}, \hyperpage{450}
    \subitem {rotate\_vector\_real\_4d}, \hyperpage{451}
  \item {mom\_array\_transform::allocate\_rotated\_array}, 
		\hyperpage{2970}
    \subitem {allocate\_rotated\_array\_integer}, \hyperpage{2971}
    \subitem {allocate\_rotated\_array\_real\_2d}, \hyperpage{2971}
    \subitem {allocate\_rotated\_array\_real\_3d}, \hyperpage{2972}
    \subitem {allocate\_rotated\_array\_real\_4d}, \hyperpage{2972}
  \item {mom\_array\_transform::rotate\_array}, \hyperpage{3544}
    \subitem {rotate\_array\_integer}, \hyperpage{3545}
    \subitem {rotate\_array\_logical}, \hyperpage{3545}
    \subitem {rotate\_array\_real\_2d}, \hyperpage{3546}
    \subitem {rotate\_array\_real\_3d}, \hyperpage{3547}
    \subitem {rotate\_array\_real\_4d}, \hyperpage{3547}
  \item {mom\_array\_transform::rotate\_array\_pair}, \hyperpage{3548}
    \subitem {rotate\_array\_pair\_integer}, \hyperpage{3548}
    \subitem {rotate\_array\_pair\_real\_2d}, \hyperpage{3549}
    \subitem {rotate\_array\_pair\_real\_3d}, \hyperpage{3549}
  \item {mom\_array\_transform::rotate\_vector}, \hyperpage{3550}
    \subitem {rotate\_vector\_real\_2d}, \hyperpage{3550}
    \subitem {rotate\_vector\_real\_3d}, \hyperpage{3551}
    \subitem {rotate\_vector\_real\_4d}, \hyperpage{3552}
  \item {mom\_barotropic}, \hyperpage{451}
    \subitem {adjust\_local\_bt\_cont\_types}, \hyperpage{453}
    \subitem {apply\_velocity\_obcs}, \hyperpage{455}
    \subitem {barotropic\_end}, \hyperpage{460}
    \subitem {barotropic\_get\_tav}, \hyperpage{460}
    \subitem {barotropic\_init}, \hyperpage{461}
    \subitem {bt\_cont\_to\_face\_areas}, \hyperpage{470}
    \subitem {bt\_mass\_source}, \hyperpage{471}
    \subitem {btcalc}, \hyperpage{473}
    \subitem {btstep}, \hyperpage{477}
    \subitem {destroy\_bt\_obc}, \hyperpage{507}
    \subitem {find\_duhbt\_du}, \hyperpage{507}
    \subitem {find\_dvhbt\_dv}, \hyperpage{508}
    \subitem {find\_face\_areas}, \hyperpage{509}
    \subitem {find\_uhbt}, \hyperpage{510}
    \subitem {find\_vhbt}, \hyperpage{511}
    \subitem {register\_barotropic\_restarts}, \hyperpage{512}
    \subitem {set\_dtbt}, \hyperpage{513}
    \subitem {set\_local\_bt\_cont\_types}, \hyperpage{515}
    \subitem {set\_up\_bt\_obc}, \hyperpage{517}
    \subitem {swap}, \hyperpage{521}
    \subitem {uhbt\_to\_ubt}, \hyperpage{521}
    \subitem {vhbt\_to\_vbt}, \hyperpage{523}
  \item {mom\_barotropic::barotropic\_cs}, \hyperpage{2978}
  \item {mom\_barotropic::bt\_obc\_type}, \hyperpage{3003}
  \item {mom\_barotropic::local\_bt\_cont\_u\_type}, \hyperpage{3330}
  \item {mom\_barotropic::local\_bt\_cont\_v\_type}, \hyperpage{3332}
  \item {mom\_barotropic::memory\_size\_type}, \hyperpage{3355}
  \item {mom\_bkgnd\_mixing}, \hyperpage{525}
    \subitem {bkgnd\_mixing\_end}, \hyperpage{525}
    \subitem {bkgnd\_mixing\_init}, \hyperpage{526}
    \subitem {calculate\_bkgnd\_mixing}, \hyperpage{528}
    \subitem {check\_bkgnd\_scheme}, \hyperpage{532}
    \subitem {cvmix\_bkgnd\_is\_used}, \hyperpage{532}
  \item {mom\_bkgnd\_mixing::bkgnd\_mixing\_cs}, \hyperpage{2996}
    \subitem {henyey\_igw\_background\_new}, \hyperpage{2999}
  \item {mom\_boundary\_update}, \hyperpage{533}
    \subitem {call\_obc\_register}, \hyperpage{533}
    \subitem {obc\_register\_end}, \hyperpage{534}
    \subitem {update\_obc\_data}, \hyperpage{534}
  \item {mom\_boundary\_update::update\_obc\_cs}, \hyperpage{3635}
  \item {mom\_bulk\_mixed\_layer}, \hyperpage{535}
    \subitem {bulkmixedlayer}, \hyperpage{537}
    \subitem {bulkmixedlayer\_init}, \hyperpage{546}
    \subitem {convective\_adjustment}, \hyperpage{550}
    \subitem {ef4}, \hyperpage{552}
    \subitem {find\_starting\_tke}, \hyperpage{553}
    \subitem {mechanical\_entrainment}, \hyperpage{556}
    \subitem {mixedlayer\_convection}, \hyperpage{562}
    \subitem {mixedlayer\_detrain\_1}, \hyperpage{569}
    \subitem {mixedlayer\_detrain\_2}, \hyperpage{574}
    \subitem {resort\_ml}, \hyperpage{586}
    \subitem {sort\_ml}, \hyperpage{591}
  \item {mom\_bulk\_mixed\_layer::bulkmixedlayer\_cs}, \hyperpage{3005}
  \item {mom\_calculate\_grad\_coriolis}
    \subitem {mom\_shared\_initialization}, \hyperpage{2338}
  \item {mom\_checksum\_packages}, \hyperpage{592}
    \subitem {mom\_accel\_chksum}, \hyperpage{592}
    \subitem {mom\_state\_chksum\_3arg}, \hyperpage{594}
    \subitem {mom\_state\_chksum\_5arg}, \hyperpage{595}
    \subitem {mom\_state\_stats}, \hyperpage{596}
    \subitem {mom\_surface\_chksum}, \hyperpage{598}
    \subitem {mom\_thermo\_chksum}, \hyperpage{599}
  \item {mom\_checksum\_packages::mom\_state\_chksum}, \hyperpage{3390}
    \subitem {mom\_state\_chksum\_3arg}, \hyperpage{3390}
    \subitem {mom\_state\_chksum\_5arg}, \hyperpage{3391}
  \item {mom\_checksum\_packages::stats}, \hyperpage{3583}
  \item {mom\_checksums}, \hyperpage{600}
    \subitem {bitcount}, \hyperpage{602}
    \subitem {chk\_sum\_msg1}, \hyperpage{602}
    \subitem {chk\_sum\_msg2}, \hyperpage{603}
    \subitem {chk\_sum\_msg3}, \hyperpage{603}
    \subitem {chk\_sum\_msg5}, \hyperpage{604}
    \subitem {chk\_sum\_msg\_nsew}, \hyperpage{605}
    \subitem {chk\_sum\_msg\_s}, \hyperpage{605}
    \subitem {chk\_sum\_msg\_w}, \hyperpage{606}
    \subitem {chksum0}, \hyperpage{606}
    \subitem {chksum1d}, \hyperpage{607}
    \subitem {chksum2d}, \hyperpage{608}
    \subitem {chksum3d}, \hyperpage{609}
    \subitem {chksum\_b\_2d}, \hyperpage{609}
    \subitem {chksum\_b\_3d}, \hyperpage{612}
    \subitem {chksum\_error}, \hyperpage{614}
    \subitem {chksum\_h\_2d}, \hyperpage{615}
    \subitem {chksum\_h\_3d}, \hyperpage{617}
    \subitem {chksum\_pair\_b\_2d}, \hyperpage{619}
    \subitem {chksum\_pair\_b\_3d}, \hyperpage{620}
    \subitem {chksum\_pair\_h\_2d}, \hyperpage{622}
    \subitem {chksum\_pair\_h\_3d}, \hyperpage{623}
    \subitem {chksum\_u\_2d}, \hyperpage{624}
    \subitem {chksum\_u\_3d}, \hyperpage{627}
    \subitem {chksum\_uv\_2d}, \hyperpage{629}
    \subitem {chksum\_uv\_3d}, \hyperpage{631}
    \subitem {chksum\_v\_2d}, \hyperpage{632}
    \subitem {chksum\_v\_3d}, \hyperpage{635}
    \subitem {is\_nan\_0d}, \hyperpage{637}
    \subitem {is\_nan\_1d}, \hyperpage{638}
    \subitem {is\_nan\_2d}, \hyperpage{638}
    \subitem {is\_nan\_3d}, \hyperpage{638}
    \subitem {mom\_checksums\_init}, \hyperpage{639}
    \subitem {zchksum}, \hyperpage{639}
  \item {mom\_checksums::bchksum}, \hyperpage{2986}
    \subitem {chksum\_b\_2d}, \hyperpage{2986}
    \subitem {chksum\_b\_3d}, \hyperpage{2989}
  \item {mom\_checksums::bchksum\_pair}, \hyperpage{2992}
    \subitem {chksum\_pair\_b\_2d}, \hyperpage{2992}
    \subitem {chksum\_pair\_b\_3d}, \hyperpage{2993}
  \item {mom\_checksums::chk\_sum\_msg}, \hyperpage{3093}
    \subitem {chk\_sum\_msg1}, \hyperpage{3094}
    \subitem {chk\_sum\_msg2}, \hyperpage{3094}
    \subitem {chk\_sum\_msg3}, \hyperpage{3095}
    \subitem {chk\_sum\_msg5}, \hyperpage{3095}
  \item {mom\_checksums::chksum}, \hyperpage{3096}
    \subitem {chksum1d}, \hyperpage{3096}
    \subitem {chksum2d}, \hyperpage{3097}
    \subitem {chksum3d}, \hyperpage{3098}
  \item {mom\_checksums::hchksum}, \hyperpage{3256}
    \subitem {chksum\_h\_2d}, \hyperpage{3256}
    \subitem {chksum\_h\_3d}, \hyperpage{3258}
  \item {mom\_checksums::hchksum\_pair}, \hyperpage{3261}
    \subitem {chksum\_pair\_h\_2d}, \hyperpage{3261}
    \subitem {chksum\_pair\_h\_3d}, \hyperpage{3262}
  \item {mom\_checksums::is\_nan}, \hyperpage{3312}
    \subitem {is\_nan\_0d}, \hyperpage{3312}
    \subitem {is\_nan\_1d}, \hyperpage{3313}
    \subitem {is\_nan\_2d}, \hyperpage{3313}
    \subitem {is\_nan\_3d}, \hyperpage{3313}
  \item {mom\_checksums::qchksum}, \hyperpage{3493}
    \subitem {chksum\_b\_2d}, \hyperpage{3493}
    \subitem {chksum\_b\_3d}, \hyperpage{3496}
  \item {mom\_checksums::uchksum}, \hyperpage{3627}
    \subitem {chksum\_u\_2d}, \hyperpage{3627}
    \subitem {chksum\_u\_3d}, \hyperpage{3630}
  \item {mom\_checksums::uvchksum}, \hyperpage{3643}
    \subitem {chksum\_uv\_2d}, \hyperpage{3643}
    \subitem {chksum\_uv\_3d}, \hyperpage{3645}
  \item {mom\_checksums::vchksum}, \hyperpage{3652}
    \subitem {chksum\_v\_2d}, \hyperpage{3652}
    \subitem {chksum\_v\_3d}, \hyperpage{3655}
  \item {mom\_checksums\_init}
    \subitem {mom\_checksums}, \hyperpage{639}
  \item {mom\_coms}, \hyperpage{641}
    \subitem {carry\_overflow}, \hyperpage{643}
    \subitem {efp\_assign}, \hyperpage{643}
    \subitem {efp\_list\_sum\_across\_pes}, \hyperpage{644}
    \subitem {efp\_minus}, \hyperpage{645}
    \subitem {efp\_plus}, \hyperpage{645}
    \subitem {efp\_real\_diff}, \hyperpage{645}
    \subitem {efp\_to\_real}, \hyperpage{646}
    \subitem {efp\_val\_sum\_across\_pes}, \hyperpage{646}
    \subitem {increment\_ints}, \hyperpage{647}
    \subitem {increment\_ints\_faster}, \hyperpage{648}
    \subitem {ints\_to\_real}, \hyperpage{648}
    \subitem {real\_to\_efp}, \hyperpage{649}
    \subitem {real\_to\_ints}, \hyperpage{649}
    \subitem {regularize\_ints}, \hyperpage{650}
    \subitem {reproducing\_efp\_sum\_2d}, \hyperpage{651}
    \subitem {reproducing\_sum\_2d}, \hyperpage{653}
    \subitem {reproducing\_sum\_3d}, \hyperpage{655}
  \item {mom\_coms::assignment(=)}, \hyperpage{2974}
    \subitem {efp\_assign}, \hyperpage{2974}
  \item {mom\_coms::efp\_sum\_across\_pes}, \hyperpage{3195}
    \subitem {efp\_list\_sum\_across\_pes}, \hyperpage{3195}
    \subitem {efp\_val\_sum\_across\_pes}, \hyperpage{3196}
  \item {mom\_coms::efp\_type}, \hyperpage{3197}
  \item {mom\_coms::operator(+)}, \hyperpage{3443}
    \subitem {efp\_plus}, \hyperpage{3444}
  \item {mom\_coms::operator(-\/)}, \hyperpage{3444}
    \subitem {efp\_minus}, \hyperpage{3444}
  \item {mom\_coms::reproducing\_sum}, \hyperpage{3533}
    \subitem {reproducing\_sum\_2d}, \hyperpage{3534}
    \subitem {reproducing\_sum\_3d}, \hyperpage{3536}
  \item {mom\_coms::reproducing\_sum\_efp}, \hyperpage{3539}
    \subitem {reproducing\_efp\_sum\_2d}, \hyperpage{3539}
  \item {mom\_constants}, \hyperpage{658}
  \item {mom\_continuity}, \hyperpage{658}
    \subitem {continuity}, \hyperpage{659}
    \subitem {continuity\_end}, \hyperpage{661}
    \subitem {continuity\_init}, \hyperpage{661}
    \subitem {continuity\_stencil}, \hyperpage{662}
  \item {mom\_continuity::continuity\_cs}, \hyperpage{3104}
    \subitem {continuity\_scheme}, \hyperpage{3105}
  \item {mom\_continuity\_ppm}, \hyperpage{663}
    \subitem {continuity\_ppm}, \hyperpage{664}
    \subitem {continuity\_ppm\_end}, \hyperpage{667}
    \subitem {continuity\_ppm\_init}, \hyperpage{667}
    \subitem {continuity\_ppm\_stencil}, \hyperpage{669}
    \subitem {merid\_face\_thickness}, \hyperpage{669}
    \subitem {merid\_flux\_layer}, \hyperpage{671}
    \subitem {meridional\_flux\_adjust}, \hyperpage{673}
    \subitem {meridional\_mass\_flux}, \hyperpage{676}
    \subitem {ppm\_limit\_cw84}, \hyperpage{681}
    \subitem {ppm\_limit\_pos}, \hyperpage{682}
    \subitem {ppm\_reconstruction\_x}, \hyperpage{683}
    \subitem {ppm\_reconstruction\_y}, \hyperpage{685}
    \subitem {ratio\_max}, \hyperpage{687}
    \subitem {set\_merid\_bt\_cont}, \hyperpage{688}
    \subitem {set\_zonal\_bt\_cont}, \hyperpage{691}
    \subitem {zonal\_face\_thickness}, \hyperpage{694}
    \subitem {zonal\_flux\_adjust}, \hyperpage{696}
    \subitem {zonal\_flux\_layer}, \hyperpage{699}
    \subitem {zonal\_mass\_flux}, \hyperpage{701}
  \item {mom\_continuity\_ppm::continuity\_ppm\_cs}, \hyperpage{3105}
  \item {mom\_continuity\_ppm::loop\_bounds\_type}, \hyperpage{3345}
  \item {mom\_controlled\_forcing}, \hyperpage{706}
    \subitem {apply\_ctrl\_forcing}, \hyperpage{707}
    \subitem {controlled\_forcing\_end}, \hyperpage{711}
    \subitem {controlled\_forcing\_init}, \hyperpage{711}
    \subitem {periodic\_int}, \hyperpage{713}
    \subitem {periodic\_real}, \hyperpage{713}
    \subitem {register\_ctrl\_forcing\_restarts}, \hyperpage{714}
  \item {mom\_controlled\_forcing::ctrl\_forcing\_cs}, \hyperpage{3117}
    \subitem {avg\_sss}, \hyperpage{3119}
    \subitem {avg\_sss\_anom}, \hyperpage{3119}
    \subitem {avg\_sst\_anom}, \hyperpage{3119}
    \subitem {avg\_time}, \hyperpage{3119}
    \subitem {heat\_0}, \hyperpage{3119}
    \subitem {heat\_cyc}, \hyperpage{3119}
    \subitem {precip\_0}, \hyperpage{3120}
    \subitem {precip\_cyc}, \hyperpage{3120}
  \item {mom\_coord\_initialization}, \hyperpage{715}
    \subitem {mom\_initialize\_coord}, \hyperpage{716}
    \subitem {set\_coord\_from\_file}, \hyperpage{717}
    \subitem {set\_coord\_from\_gprime}, \hyperpage{718}
    \subitem {set\_coord\_from\_layer\_density}, \hyperpage{719}
    \subitem {set\_coord\_from\_ts\_profile}, \hyperpage{720}
    \subitem {set\_coord\_from\_ts\_range}, \hyperpage{721}
    \subitem {set\_coord\_from\_ts\_ref}, \hyperpage{722}
    \subitem {set\_coord\_linear}, \hyperpage{723}
    \subitem {set\_coord\_to\_none}, \hyperpage{724}
    \subitem {write\_vertgrid\_file}, \hyperpage{725}
  \item {mom\_coriolisadv}, \hyperpage{726}
    \subitem {coradcalc}, \hyperpage{726}
    \subitem {coriolisadv\_end}, \hyperpage{737}
    \subitem {coriolisadv\_init}, \hyperpage{737}
    \subitem {gradke}, \hyperpage{741}
  \item {mom\_coriolisadv::coriolisadv\_cs}, \hyperpage{3108}
    \subitem {coriolis\_scheme}, \hyperpage{3110}
    \subitem {pv\_adv\_scheme}, \hyperpage{3111}
  \item {mom\_cpu\_clock}, \hyperpage{743}
    \subitem {cpu\_clock\_id}, \hyperpage{743}
  \item {mom\_cvmix\_conv}, \hyperpage{744}
    \subitem {calculate\_cvmix\_conv}, \hyperpage{744}
    \subitem {cvmix\_conv\_end}, \hyperpage{747}
    \subitem {cvmix\_conv\_init}, \hyperpage{747}
    \subitem {cvmix\_conv\_is\_used}, \hyperpage{749}
  \item {mom\_cvmix\_conv::cvmix\_conv\_cs}, \hyperpage{3120}
  \item {mom\_cvmix\_ddiff}, \hyperpage{749}
    \subitem {compute\_ddiff\_coeffs}, \hyperpage{750}
    \subitem {cvmix\_ddiff\_end}, \hyperpage{752}
    \subitem {cvmix\_ddiff\_init}, \hyperpage{752}
    \subitem {cvmix\_ddiff\_is\_used}, \hyperpage{754}
  \item {mom\_cvmix\_ddiff::cvmix\_ddiff\_cs}, \hyperpage{3122}
  \item {mom\_cvmix\_kpp}, \hyperpage{754}
    \subitem {kpp\_calculate}, \hyperpage{756}
    \subitem {kpp\_compute\_bld}, \hyperpage{760}
    \subitem {kpp\_end}, \hyperpage{766}
    \subitem {kpp\_get\_bld}, \hyperpage{766}
    \subitem {kpp\_init}, \hyperpage{767}
    \subitem {kpp\_nonlocaltransport\_saln}, \hyperpage{772}
    \subitem {kpp\_nonlocaltransport\_temp}, \hyperpage{774}
    \subitem {kpp\_smooth\_bld}, \hyperpage{775}
  \item {mom\_cvmix\_kpp::kpp\_cs}, \hyperpage{3321}
  \item {mom\_cvmix\_shear}, \hyperpage{776}
    \subitem {calculate\_cvmix\_shear}, \hyperpage{777}
    \subitem {cvmix\_shear\_end}, \hyperpage{779}
    \subitem {cvmix\_shear\_init}, \hyperpage{779}
    \subitem {cvmix\_shear\_is\_used}, \hyperpage{781}
  \item {mom\_cvmix\_shear::cvmix\_shear\_cs}, \hyperpage{3123}
  \item {mom\_debugging}, \hyperpage{782}
    \subitem {check\_column\_integral}, \hyperpage{784}
    \subitem {check\_column\_integrals}, \hyperpage{784}
    \subitem {check\_redundant\_sb2d}, \hyperpage{785}
    \subitem {check\_redundant\_sb3d}, \hyperpage{786}
    \subitem {check\_redundant\_st2d}, \hyperpage{787}
    \subitem {check\_redundant\_st3d}, \hyperpage{788}
    \subitem {check\_redundant\_vb2d}, \hyperpage{789}
    \subitem {check\_redundant\_vb3d}, \hyperpage{790}
    \subitem {check\_redundant\_vc2d}, \hyperpage{791}
    \subitem {check\_redundant\_vc3d}, \hyperpage{793}
    \subitem {check\_redundant\_vt2d}, \hyperpage{794}
    \subitem {check\_redundant\_vt3d}, \hyperpage{795}
    \subitem {chksum\_vec\_a2d}, \hyperpage{796}
    \subitem {chksum\_vec\_a3d}, \hyperpage{797}
    \subitem {chksum\_vec\_b2d}, \hyperpage{797}
    \subitem {chksum\_vec\_b3d}, \hyperpage{798}
    \subitem {chksum\_vec\_c2d}, \hyperpage{799}
    \subitem {chksum\_vec\_c3d}, \hyperpage{800}
    \subitem {mom\_debugging\_init}, \hyperpage{800}
    \subitem {totalstuff}, \hyperpage{801}
    \subitem {totaltands}, \hyperpage{801}
  \item {mom\_debugging::check\_redundant}, \hyperpage{3078}
    \subitem {check\_redundant\_vc2d}, \hyperpage{3079}
    \subitem {check\_redundant\_vc3d}, \hyperpage{3080}
  \item {mom\_debugging::check\_redundant\_b}, \hyperpage{3081}
    \subitem {check\_redundant\_sb2d}, \hyperpage{3082}
    \subitem {check\_redundant\_sb3d}, \hyperpage{3083}
    \subitem {check\_redundant\_vb2d}, \hyperpage{3083}
    \subitem {check\_redundant\_vb3d}, \hyperpage{3085}
  \item {mom\_debugging::check\_redundant\_c}, \hyperpage{3086}
    \subitem {check\_redundant\_vc2d}, \hyperpage{3086}
    \subitem {check\_redundant\_vc3d}, \hyperpage{3088}
  \item {mom\_debugging::check\_redundant\_t}, \hyperpage{3089}
    \subitem {check\_redundant\_st2d}, \hyperpage{3089}
    \subitem {check\_redundant\_st3d}, \hyperpage{3090}
    \subitem {check\_redundant\_vt2d}, \hyperpage{3091}
    \subitem {check\_redundant\_vt3d}, \hyperpage{3092}
  \item {mom\_debugging::vec\_chksum}, \hyperpage{3657}
    \subitem {chksum\_vec\_c2d}, \hyperpage{3658}
    \subitem {chksum\_vec\_c3d}, \hyperpage{3658}
  \item {mom\_debugging::vec\_chksum\_a}, \hyperpage{3659}
    \subitem {chksum\_vec\_a2d}, \hyperpage{3660}
    \subitem {chksum\_vec\_a3d}, \hyperpage{3660}
  \item {mom\_debugging::vec\_chksum\_b}, \hyperpage{3661}
    \subitem {chksum\_vec\_b2d}, \hyperpage{3662}
    \subitem {chksum\_vec\_b3d}, \hyperpage{3662}
  \item {mom\_debugging::vec\_chksum\_c}, \hyperpage{3663}
    \subitem {chksum\_vec\_c2d}, \hyperpage{3663}
    \subitem {chksum\_vec\_c3d}, \hyperpage{3664}
  \item {mom\_debugging\_init}
    \subitem {mom\_debugging}, \hyperpage{800}
  \item {mom\_density\_integrals}, \hyperpage{802}
    \subitem {find\_depth\_of\_pressure\_in\_cell}, \hyperpage{803}
    \subitem {frac\_dp\_at\_pos}, \hyperpage{805}
    \subitem {int\_density\_dz}, \hyperpage{806}
    \subitem {int\_density\_dz\_generic\_pcm}, \hyperpage{808}
    \subitem {int\_density\_dz\_generic\_plm}, \hyperpage{811}
    \subitem {int\_density\_dz\_generic\_ppm}, \hyperpage{817}
    \subitem {int\_spec\_vol\_dp\_generic\_pcm}, \hyperpage{822}
    \subitem {int\_spec\_vol\_dp\_generic\_plm}, \hyperpage{826}
    \subitem {int\_specific\_vol\_dp}, \hyperpage{830}
  \item {mom\_diabatic\_aux}, \hyperpage{832}
    \subitem {adjust\_salt}, \hyperpage{833}
    \subitem {applyboundaryfluxesinout}, \hyperpage{834}
    \subitem {diabatic\_aux\_end}, \hyperpage{842}
    \subitem {diabatic\_aux\_init}, \hyperpage{842}
    \subitem {diagnosemldbydensitydifference}, \hyperpage{844}
    \subitem {diagnosemldbyenergy}, \hyperpage{847}
    \subitem {differential\_diffuse\_t\_s}, \hyperpage{850}
    \subitem {find\_uv\_at\_h}, \hyperpage{851}
    \subitem {make\_frazil}, \hyperpage{853}
    \subitem {set\_pen\_shortwave}, \hyperpage{855}
    \subitem {tridiagts}, \hyperpage{857}
  \item {mom\_diabatic\_aux::diabatic\_aux\_cs}, \hyperpage{3126}
  \item {mom\_diabatic\_driver}, \hyperpage{858}
    \subitem {adiabatic}, \hyperpage{859}
    \subitem {adiabatic\_driver\_init}, \hyperpage{860}
    \subitem {diabatic}, \hyperpage{861}
    \subitem {diabatic\_ale}, \hyperpage{864}
    \subitem {diabatic\_ale\_legacy}, \hyperpage{874}
    \subitem {diabatic\_driver\_end}, \hyperpage{883}
    \subitem {diabatic\_driver\_init}, \hyperpage{884}
    \subitem {diagnose\_boundary\_forcing\_tendency}, \hyperpage{892}
    \subitem {diagnose\_diabatic\_diff\_tendency}, \hyperpage{894}
    \subitem {diagnose\_frazil\_tendency}, \hyperpage{896}
    \subitem {extract\_diabatic\_member}, \hyperpage{897}
    \subitem {layered\_diabatic}, \hyperpage{898}
  \item {mom\_diabatic\_driver::diabatic\_cs}, \hyperpage{3128}
  \item {mom\_diag\_manager\_wrapper}, \hyperpage{911}
    \subitem {register\_diag\_field\_array\_fms}, \hyperpage{911}
    \subitem {register\_diag\_field\_scalar\_fms}, \hyperpage{912}
  \item {mom\_diag\_manager\_wrapper::register\_diag\_field\_fms}, 
		\hyperpage{3514}
    \subitem {register\_diag\_field\_array\_fms}, \hyperpage{3514}
    \subitem {register\_diag\_field\_scalar\_fms}, \hyperpage{3515}
  \item {mom\_diag\_mediator}, \hyperpage{914}
    \subitem {add\_diag\_to\_list}, \hyperpage{918}
    \subitem {add\_xyz\_method}, \hyperpage{919}
    \subitem {alloc\_diag\_with\_id}, \hyperpage{920}
    \subitem {attach\_cell\_methods}, \hyperpage{921}
    \subitem {define\_axes\_group}, \hyperpage{923}
    \subitem {define\_axes\_group\_dsamp}, \hyperpage{925}
    \subitem {describe\_option}, \hyperpage{928}
    \subitem {diag\_associate\_volume\_cell\_measure}, \hyperpage{928}
    \subitem {diag\_copy\_diag\_to\_storage}, \hyperpage{929}
    \subitem {diag\_copy\_storage\_to\_diag}, \hyperpage{929}
    \subitem {diag\_get\_volume\_cell\_measure\_dm\_id}, 
		\hyperpage{930}
    \subitem {diag\_grid\_storage\_end}, \hyperpage{930}
    \subitem {diag\_grid\_storage\_init}, \hyperpage{931}
    \subitem {diag\_masks\_set}, \hyperpage{931}
    \subitem {diag\_mediator\_close\_registration}, \hyperpage{932}
    \subitem {diag\_mediator\_end}, \hyperpage{932}
    \subitem {diag\_mediator\_infrastructure\_init}, \hyperpage{933}
    \subitem {diag\_mediator\_init}, \hyperpage{934}
    \subitem {diag\_register\_area\_ids}, \hyperpage{937}
    \subitem {diag\_restore\_grids}, \hyperpage{937}
    \subitem {diag\_save\_grids}, \hyperpage{938}
    \subitem {diag\_set\_state\_ptrs}, \hyperpage{938}
    \subitem {diag\_update\_remap\_grids}, \hyperpage{939}
    \subitem {disable\_averaging}, \hyperpage{940}
    \subitem {downsample\_diag\_field\_2d}, \hyperpage{940}
    \subitem {downsample\_diag\_field\_3d}, \hyperpage{942}
    \subitem {downsample\_diag\_indices\_get}, \hyperpage{943}
    \subitem {downsample\_diag\_masks\_set}, \hyperpage{944}
    \subitem {downsample\_field\_2d}, \hyperpage{945}
    \subitem {downsample\_field\_3d}, \hyperpage{948}
    \subitem {downsample\_mask\_2d}, \hyperpage{951}
    \subitem {downsample\_mask\_3d}, \hyperpage{952}
    \subitem {enable\_averages}, \hyperpage{953}
    \subitem {enable\_averaging}, \hyperpage{954}
    \subitem {get\_diag\_time\_end}, \hyperpage{954}
    \subitem {get\_new\_diag\_id}, \hyperpage{954}
    \subitem {i2s}, \hyperpage{955}
    \subitem {initialize\_diag\_type}, \hyperpage{956}
    \subitem {log\_available\_diag}, \hyperpage{956}
    \subitem {log\_chksum\_diag}, \hyperpage{957}
    \subitem {ocean\_register\_diag}, \hyperpage{957}
    \subitem {post\_data\_0d}, \hyperpage{959}
    \subitem {post\_data\_1d\_k}, \hyperpage{960}
    \subitem {post\_data\_2d}, \hyperpage{961}
    \subitem {post\_data\_2d\_low}, \hyperpage{961}
    \subitem {post\_data\_3d}, \hyperpage{964}
    \subitem {post\_data\_3d\_low}, \hyperpage{965}
    \subitem {post\_xy\_average}, \hyperpage{968}
    \subitem {query\_averaging\_enabled}, \hyperpage{969}
    \subitem {register\_cell\_measure}, \hyperpage{969}
    \subitem {register\_diag\_field}, \hyperpage{970}
    \subitem {register\_diag\_field\_expand\_axes}, \hyperpage{974}
    \subitem {register\_diag\_field\_expand\_cmor}, \hyperpage{976}
    \subitem {register\_scalar\_field}, \hyperpage{979}
    \subitem {register\_static\_field}, \hyperpage{982}
    \subitem {set\_axes\_info}, \hyperpage{984}
    \subitem {set\_axes\_info\_dsamp}, \hyperpage{988}
    \subitem {set\_diag\_mediator\_grid}, \hyperpage{991}
    \subitem {set\_masks\_for\_axes}, \hyperpage{991}
    \subitem {set\_masks\_for\_axes\_dsamp}, \hyperpage{992}
  \item {mom\_diag\_mediator::axes\_grp}, \hyperpage{2976}
  \item {mom\_diag\_mediator::diag\_ctrl}, \hyperpage{3135}
  \item {mom\_diag\_mediator::diag\_dsamp}, \hyperpage{3140}
  \item {mom\_diag\_mediator::diag\_grid\_storage}, \hyperpage{3141}
  \item {mom\_diag\_mediator::diag\_grids\_type}, \hyperpage{3142}
  \item {mom\_diag\_mediator::diag\_type}, \hyperpage{3144}
  \item {mom\_diag\_mediator::diagcs\_dsamp}, \hyperpage{3146}
  \item {mom\_diag\_mediator::downsample\_diag\_field}, 
		\hyperpage{3171}
    \subitem {downsample\_diag\_field\_2d}, \hyperpage{3171}
    \subitem {downsample\_diag\_field\_3d}, \hyperpage{3173}
  \item {mom\_diag\_mediator::downsample\_field}, \hyperpage{3174}
    \subitem {downsample\_field\_2d}, \hyperpage{3174}
    \subitem {downsample\_field\_3d}, \hyperpage{3177}
  \item {mom\_diag\_mediator::downsample\_mask}, \hyperpage{3180}
    \subitem {downsample\_mask\_2d}, \hyperpage{3180}
    \subitem {downsample\_mask\_3d}, \hyperpage{3181}
  \item {mom\_diag\_mediator::post\_data}, \hyperpage{3479}
    \subitem {post\_data\_0d}, \hyperpage{3480}
    \subitem {post\_data\_1d\_k}, \hyperpage{3480}
    \subitem {post\_data\_2d}, \hyperpage{3481}
    \subitem {post\_data\_3d}, \hyperpage{3482}
  \item {mom\_diag\_remap}, \hyperpage{994}
    \subitem {diag\_remap\_axes\_configured}, \hyperpage{995}
    \subitem {diag\_remap\_calc\_hmask}, \hyperpage{995}
    \subitem {diag\_remap\_configure\_axes}, \hyperpage{996}
    \subitem {diag\_remap\_diag\_registration\_closed}, \hyperpage{997}
    \subitem {diag\_remap\_do\_remap}, \hyperpage{997}
    \subitem {diag\_remap\_end}, \hyperpage{999}
    \subitem {diag\_remap\_get\_axes\_info}, \hyperpage{999}
    \subitem {diag\_remap\_init}, \hyperpage{1000}
    \subitem {diag\_remap\_set\_active}, \hyperpage{1000}
    \subitem {diag\_remap\_update}, \hyperpage{1001}
    \subitem {horizontally\_average\_diag\_field}, \hyperpage{1002}
    \subitem {vertically\_interpolate\_diag\_field}, \hyperpage{1005}
    \subitem {vertically\_reintegrate\_diag\_field}, \hyperpage{1006}
  \item {mom\_diag\_remap::diag\_remap\_ctrl}, \hyperpage{3142}
  \item {mom\_diag\_vkernels}, \hyperpage{1008}
    \subitem {diag\_vkernels\_unit\_tests}, \hyperpage{1008}
    \subitem {interpolate\_column}, \hyperpage{1010}
    \subitem {reintegrate\_column}, \hyperpage{1011}
    \subitem {test\_interp}, \hyperpage{1013}
    \subitem {test\_reintegrate}, \hyperpage{1014}
  \item {mom\_diagnostics}, \hyperpage{1015}
    \subitem {calculate\_derivs}, \hyperpage{1016}
    \subitem {calculate\_diagnostic\_fields}, \hyperpage{1016}
    \subitem {calculate\_energy\_diagnostics}, \hyperpage{1024}
    \subitem {calculate\_vertical\_integrals}, \hyperpage{1027}
    \subitem {find\_weights}, \hyperpage{1029}
    \subitem {mom\_diagnostics\_end}, \hyperpage{1030}
    \subitem {mom\_diagnostics\_init}, \hyperpage{1031}
    \subitem {post\_surface\_dyn\_diags}, \hyperpage{1037}
    \subitem {post\_surface\_thermo\_diags}, \hyperpage{1037}
    \subitem {post\_transport\_diagnostics}, \hyperpage{1040}
    \subitem {register\_surface\_diags}, \hyperpage{1042}
    \subitem {register\_time\_deriv}, \hyperpage{1043}
    \subitem {register\_transport\_diags}, \hyperpage{1044}
    \subitem {set\_dependent\_diagnostics}, \hyperpage{1045}
    \subitem {write\_static\_fields}, \hyperpage{1046}
  \item {mom\_diagnostics::diagnostics\_cs}, \hyperpage{3149}
  \item {mom\_diagnostics::surface\_diag\_ids}, \hyperpage{3588}
  \item {mom\_diagnostics::transport\_diag\_ids}, \hyperpage{3626}
  \item {mom\_diagnostics\_end}
    \subitem {mom\_diagnostics}, \hyperpage{1030}
  \item {mom\_diagnostics\_init}
    \subitem {mom\_diagnostics}, \hyperpage{1031}
  \item {mom\_diapyc\_energy\_req}, \hyperpage{1048}
    \subitem {diapyc\_energy\_req\_calc}, \hyperpage{1049}
    \subitem {diapyc\_energy\_req\_end}, \hyperpage{1060}
    \subitem {diapyc\_energy\_req\_init}, \hyperpage{1061}
    \subitem {diapyc\_energy\_req\_test}, \hyperpage{1062}
    \subitem {find\_pe\_chg}, \hyperpage{1063}
    \subitem {find\_pe\_chg\_orig}, \hyperpage{1067}
  \item {mom\_diapyc\_energy\_req::diapyc\_energy\_req\_cs}, 
		\hyperpage{3154}
  \item {mom\_document}, \hyperpage{1070}
    \subitem {define\_string}, \hyperpage{1072}
    \subitem {doc\_closeblock}, \hyperpage{1073}
    \subitem {doc\_end}, \hyperpage{1073}
    \subitem {doc\_function}, \hyperpage{1074}
    \subitem {doc\_init}, \hyperpage{1075}
    \subitem {doc\_module}, \hyperpage{1075}
    \subitem {doc\_openblock}, \hyperpage{1076}
    \subitem {doc\_param\_char}, \hyperpage{1077}
    \subitem {doc\_param\_int}, \hyperpage{1078}
    \subitem {doc\_param\_int\_array}, \hyperpage{1079}
    \subitem {doc\_param\_logical}, \hyperpage{1080}
    \subitem {doc\_param\_logical\_array}, \hyperpage{1081}
    \subitem {doc\_param\_none}, \hyperpage{1082}
    \subitem {doc\_param\_real}, \hyperpage{1083}
    \subitem {doc\_param\_real\_array}, \hyperpage{1084}
    \subitem {doc\_param\_time}, \hyperpage{1085}
    \subitem {doc\_subroutine}, \hyperpage{1086}
    \subitem {int\_string}, \hyperpage{1086}
    \subitem {logical\_string}, \hyperpage{1087}
    \subitem {mesghasbeendocumented}, \hyperpage{1087}
    \subitem {open\_doc\_file}, \hyperpage{1088}
    \subitem {real\_array\_string}, \hyperpage{1089}
    \subitem {real\_string}, \hyperpage{1090}
    \subitem {testformattedfloatisreal}, \hyperpage{1091}
    \subitem {time\_string}, \hyperpage{1091}
    \subitem {undef\_string}, \hyperpage{1092}
    \subitem {writemessageanddesc}, \hyperpage{1092}
  \item {mom\_document::doc\_param}, \hyperpage{3158}
    \subitem {doc\_param\_char}, \hyperpage{3159}
    \subitem {doc\_param\_int}, \hyperpage{3160}
    \subitem {doc\_param\_int\_array}, \hyperpage{3161}
    \subitem {doc\_param\_logical}, \hyperpage{3162}
    \subitem {doc\_param\_logical\_array}, \hyperpage{3163}
    \subitem {doc\_param\_none}, \hyperpage{3164}
    \subitem {doc\_param\_real}, \hyperpage{3164}
    \subitem {doc\_param\_real\_array}, \hyperpage{3165}
    \subitem {doc\_param\_time}, \hyperpage{3166}
  \item {mom\_document::doc\_type}, \hyperpage{3168}
  \item {mom\_document::link\_msg}, \hyperpage{3329}
  \item {mom\_domains}, \hyperpage{1094}
    \subitem {clone\_md\_to\_d2d}, \hyperpage{1096}
    \subitem {clone\_md\_to\_md}, \hyperpage{1098}
    \subitem {complete\_group\_pass}, \hyperpage{1100}
    \subitem {create\_var\_group\_pass\_2d}, \hyperpage{1101}
    \subitem {create\_var\_group\_pass\_3d}, \hyperpage{1102}
    \subitem {create\_vector\_group\_pass\_2d}, \hyperpage{1103}
    \subitem {create\_vector\_group\_pass\_3d}, \hyperpage{1104}
    \subitem {do\_group\_pass}, \hyperpage{1105}
    \subitem {fill\_vector\_symmetric\_edges\_2d}, \hyperpage{1106}
    \subitem {get\_domain\_extent}, \hyperpage{1108}
    \subitem {get\_domain\_extent\_dsamp2}, \hyperpage{1109}
    \subitem {get\_global\_shape}, \hyperpage{1110}
    \subitem {get\_simple\_array\_i\_ind}, \hyperpage{1111}
    \subitem {get\_simple\_array\_j\_ind}, \hyperpage{1111}
    \subitem {mom\_domains\_init}, \hyperpage{1112}
    \subitem {pass\_var\_2d}, \hyperpage{1118}
    \subitem {pass\_var\_3d}, \hyperpage{1120}
    \subitem {pass\_var\_complete\_2d}, \hyperpage{1121}
    \subitem {pass\_var\_complete\_3d}, \hyperpage{1122}
    \subitem {pass\_var\_start\_2d}, \hyperpage{1124}
    \subitem {pass\_var\_start\_3d}, \hyperpage{1125}
    \subitem {pass\_vector\_2d}, \hyperpage{1126}
    \subitem {pass\_vector\_3d}, \hyperpage{1127}
    \subitem {pass\_vector\_complete\_2d}, \hyperpage{1129}
    \subitem {pass\_vector\_complete\_3d}, \hyperpage{1130}
    \subitem {pass\_vector\_start\_2d}, \hyperpage{1131}
    \subitem {pass\_vector\_start\_3d}, \hyperpage{1133}
    \subitem {start\_group\_pass}, \hyperpage{1134}
  \item {mom\_domains::clone\_mom\_domain}, \hyperpage{3099}
    \subitem {clone\_md\_to\_d2d}, \hyperpage{3099}
    \subitem {clone\_md\_to\_md}, \hyperpage{3101}
  \item {mom\_domains::create\_group\_pass}, \hyperpage{3111}
    \subitem {create\_var\_group\_pass\_2d}, \hyperpage{3112}
    \subitem {create\_var\_group\_pass\_3d}, \hyperpage{3113}
    \subitem {create\_vector\_group\_pass\_2d}, \hyperpage{3114}
    \subitem {create\_vector\_group\_pass\_3d}, \hyperpage{3115}
  \item {mom\_domains::fill\_symmetric\_edges}, \hyperpage{3212}
    \subitem {fill\_vector\_symmetric\_edges\_2d}, \hyperpage{3213}
  \item {mom\_domains::mom\_domain\_type}, \hyperpage{3367}
  \item {mom\_domains::pass\_var}, \hyperpage{3458}
    \subitem {pass\_var\_2d}, \hyperpage{3458}
    \subitem {pass\_var\_3d}, \hyperpage{3461}
  \item {mom\_domains::pass\_var\_complete}, \hyperpage{3462}
    \subitem {pass\_var\_complete\_2d}, \hyperpage{3462}
    \subitem {pass\_var\_complete\_3d}, \hyperpage{3463}
  \item {mom\_domains::pass\_var\_start}, \hyperpage{3464}
    \subitem {pass\_var\_start\_2d}, \hyperpage{3465}
    \subitem {pass\_var\_start\_3d}, \hyperpage{3466}
  \item {mom\_domains::pass\_vector}, \hyperpage{3467}
    \subitem {pass\_vector\_2d}, \hyperpage{3468}
    \subitem {pass\_vector\_3d}, \hyperpage{3469}
  \item {mom\_domains::pass\_vector\_complete}, \hyperpage{3470}
    \subitem {pass\_vector\_complete\_2d}, \hyperpage{3471}
    \subitem {pass\_vector\_complete\_3d}, \hyperpage{3472}
  \item {mom\_domains::pass\_vector\_start}, \hyperpage{3474}
    \subitem {pass\_vector\_start\_2d}, \hyperpage{3474}
    \subitem {pass\_vector\_start\_3d}, \hyperpage{3475}
  \item {mom\_domains\_init}
    \subitem {mom\_domains}, \hyperpage{1112}
  \item {mom\_dyn\_horgrid}, \hyperpage{1135}
    \subitem {adcroft\_reciprocal}, \hyperpage{1135}
    \subitem {create\_dyn\_horgrid}, \hyperpage{1136}
    \subitem {destroy\_dyn\_horgrid}, \hyperpage{1137}
    \subitem {rescale\_dyn\_horgrid\_bathymetry}, \hyperpage{1138}
    \subitem {set\_derived\_dyn\_horgrid}, \hyperpage{1139}
  \item {mom\_dyn\_horgrid::dyn\_horgrid\_type}, \hyperpage{3189}
  \item {mom\_dynamics\_split\_rk2}, \hyperpage{1140}
    \subitem {end\_dyn\_split\_rk2}, \hyperpage{1140}
    \subitem {initialize\_dyn\_split\_rk2}, \hyperpage{1141}
    \subitem {register\_restarts\_dyn\_split\_rk2}, \hyperpage{1147}
    \subitem {step\_mom\_dyn\_split\_rk2}, \hyperpage{1148}
  \item {mom\_dynamics\_split\_rk2::mom\_dyn\_split\_rk2\_cs}, 
		\hyperpage{3369}
  \item {mom\_dynamics\_unsplit}, \hyperpage{1159}
    \subitem {end\_dyn\_unsplit}, \hyperpage{1160}
    \subitem {initialize\_dyn\_unsplit}, \hyperpage{1160}
    \subitem {register\_restarts\_dyn\_unsplit}, \hyperpage{1163}
    \subitem {step\_mom\_dyn\_unsplit}, \hyperpage{1164}
  \item {mom\_dynamics\_unsplit::mom\_dyn\_unsplit\_cs}, 
		\hyperpage{3374}
  \item {mom\_dynamics\_unsplit\_rk2}, \hyperpage{1169}
    \subitem {end\_dyn\_unsplit\_rk2}, \hyperpage{1170}
    \subitem {initialize\_dyn\_unsplit\_rk2}, \hyperpage{1170}
    \subitem {register\_restarts\_dyn\_unsplit\_rk2}, \hyperpage{1173}
    \subitem {step\_mom\_dyn\_unsplit\_rk2}, \hyperpage{1174}
  \item {mom\_dynamics\_unsplit\_rk2::mom\_dyn\_unsplit\_rk2\_cs}, 
		\hyperpage{3377}
  \item {mom\_end}
    \subitem {mom}, \hyperpage{374}
  \item {MOM\_energetic\_PBL}, \hyperpage{1179}
  \item {mom\_energetic\_pbl}, \hyperpage{1179}
    \subitem {additive\_string}, \hyperpage{1215}
    \subitem {constant\_string}, \hyperpage{1215}
    \subitem {energetic\_pbl}, \hyperpage{1180}
    \subitem {energetic\_pbl\_end}, \hyperpage{1185}
    \subitem {energetic\_pbl\_get\_mld}, \hyperpage{1185}
    \subitem {energetic\_pbl\_init}, \hyperpage{1186}
    \subitem {epbl\_column}, \hyperpage{1192}
    \subitem {find\_mstar}, \hyperpage{1205}
    \subitem {find\_pe\_chg}, \hyperpage{1206}
    \subitem {find\_pe\_chg\_orig}, \hyperpage{1210}
    \subitem {mstar\_langmuir}, \hyperpage{1213}
    \subitem {none\_string}, \hyperpage{1215}
    \subitem {om4\_string}, \hyperpage{1215}
    \subitem {rescaled\_string}, \hyperpage{1216}
    \subitem {rh18\_string}, \hyperpage{1216}
    \subitem {root\_tke\_string}, \hyperpage{1216}
    \subitem {use\_fixed\_mstar}, \hyperpage{1216}
  \item {mom\_energetic\_pbl::energetic\_pbl\_cs}, \hyperpage{3197}
  \item {mom\_energetic\_pbl::epbl\_column\_diags}, \hyperpage{3205}
  \item {mom\_entrain\_diffusive}, \hyperpage{1216}
    \subitem {determine\_dskb}, \hyperpage{1218}
    \subitem {determine\_ea\_kb}, \hyperpage{1221}
    \subitem {entrain\_diffusive\_end}, \hyperpage{1225}
    \subitem {entrain\_diffusive\_init}, \hyperpage{1226}
    \subitem {entrainment\_diffusive}, \hyperpage{1227}
    \subitem {f\_kb\_to\_ea\_kb}, \hyperpage{1238}
    \subitem {f\_to\_ent}, \hyperpage{1240}
    \subitem {find\_maxf\_kb}, \hyperpage{1243}
    \subitem {set\_ent\_bl}, \hyperpage{1247}
  \item {mom\_entrain\_diffusive::entrain\_diffusive\_cs}, 
		\hyperpage{3202}
  \item {mom\_eos}, \hyperpage{1250}
    \subitem {analytic\_int\_density\_dz}, \hyperpage{1253}
    \subitem {analytic\_int\_specific\_vol\_dp}, \hyperpage{1255}
    \subitem {calc\_spec\_vol\_1d}, \hyperpage{1257}
    \subitem {calc\_spec\_vol\_derivs\_1d}, \hyperpage{1258}
    \subitem {calc\_spec\_vol\_scalar}, \hyperpage{1259}
    \subitem {calculate\_compress\_array}, \hyperpage{1260}
    \subitem {calculate\_compress\_scalar}, \hyperpage{1261}
    \subitem {calculate\_density\_1d}, \hyperpage{1262}
    \subitem {calculate\_density\_array}, \hyperpage{1263}
    \subitem {calculate\_density\_derivs\_1d}, \hyperpage{1264}
    \subitem {calculate\_density\_derivs\_array}, \hyperpage{1265}
    \subitem {calculate\_density\_derivs\_scalar}, \hyperpage{1267}
    \subitem {calculate\_density\_scalar}, \hyperpage{1268}
    \subitem {calculate\_density\_second\_derivs\_array}, 
		\hyperpage{1269}
    \subitem {calculate\_density\_second\_derivs\_scalar}, 
		\hyperpage{1270}
    \subitem {calculate\_spec\_vol\_array}, \hyperpage{1272}
    \subitem {calculate\_spec\_vol\_derivs\_array}, \hyperpage{1273}
    \subitem {calculate\_stanley\_density\_1d}, \hyperpage{1274}
    \subitem {calculate\_stanley\_density\_array}, \hyperpage{1275}
    \subitem {calculate\_stanley\_density\_scalar}, \hyperpage{1277}
    \subitem {calculate\_tfreeze\_array}, \hyperpage{1278}
    \subitem {calculate\_tfreeze\_scalar}, \hyperpage{1279}
    \subitem {convert\_temp\_salt\_for\_teos10}, \hyperpage{1280}
    \subitem {eos\_allocate}, \hyperpage{1281}
    \subitem {eos\_domain}, \hyperpage{1281}
    \subitem {eos\_end}, \hyperpage{1281}
    \subitem {eos\_init}, \hyperpage{1282}
    \subitem {eos\_manual\_init}, \hyperpage{1283}
    \subitem {eos\_quadrature}, \hyperpage{1284}
    \subitem {eos\_use\_linear}, \hyperpage{1285}
    \subitem {extract\_member\_eos}, \hyperpage{1285}
    \subitem {query\_compressible}, \hyperpage{1286}
  \item {mom\_eos::calculate\_compress}, \hyperpage{3009}
    \subitem {calculate\_compress\_array}, \hyperpage{3010}
    \subitem {calculate\_compress\_scalar}, \hyperpage{3011}
  \item {mom\_eos::calculate\_density}, \hyperpage{3012}
    \subitem {calculate\_density\_1d}, \hyperpage{3012}
    \subitem {calculate\_density\_array}, \hyperpage{3014}
    \subitem {calculate\_density\_scalar}, \hyperpage{3015}
    \subitem {calculate\_stanley\_density\_1d}, \hyperpage{3016}
    \subitem {calculate\_stanley\_density\_array}, \hyperpage{3017}
    \subitem {calculate\_stanley\_density\_scalar}, \hyperpage{3019}
  \item {mom\_eos::calculate\_density\_derivs}, \hyperpage{3020}
    \subitem {calculate\_density\_derivs\_1d}, \hyperpage{3020}
    \subitem {calculate\_density\_derivs\_array}, \hyperpage{3021}
    \subitem {calculate\_density\_derivs\_scalar}, \hyperpage{3023}
  \item {mom\_eos::calculate\_density\_second\_derivs}, 
		\hyperpage{3037}
    \subitem {calculate\_density\_second\_derivs\_array}, 
		\hyperpage{3038}
    \subitem {calculate\_density\_second\_derivs\_scalar}, 
		\hyperpage{3040}
  \item {mom\_eos::calculate\_spec\_vol}, \hyperpage{3055}
    \subitem {calc\_spec\_vol\_1d}, \hyperpage{3056}
    \subitem {calc\_spec\_vol\_scalar}, \hyperpage{3057}
    \subitem {calculate\_spec\_vol\_array}, \hyperpage{3058}
  \item {mom\_eos::calculate\_specific\_vol\_derivs}, \hyperpage{3068}
    \subitem {calc\_spec\_vol\_derivs\_1d}, \hyperpage{3068}
    \subitem {calculate\_spec\_vol\_derivs\_array}, \hyperpage{3069}
  \item {mom\_eos::calculate\_tfreeze}, \hyperpage{3071}
    \subitem {calculate\_tfreeze\_array}, \hyperpage{3071}
    \subitem {calculate\_tfreeze\_scalar}, \hyperpage{3072}
  \item {mom\_eos::eos\_type}, \hyperpage{3204}
  \item {mom\_eos\_linear}, \hyperpage{1287}
    \subitem {calculate\_compress\_linear}, \hyperpage{1288}
    \subitem {calculate\_density\_array\_linear}, \hyperpage{1289}
    \subitem {calculate\_density\_derivs\_array\_linear}, 
		\hyperpage{1290}
    \subitem {calculate\_density\_derivs\_scalar\_linear}, 
		\hyperpage{1291}
    \subitem {calculate\_density\_scalar\_linear}, \hyperpage{1292}
    \subitem {calculate\_density\_second\_derivs\_array\_linear}, 
		\hyperpage{1292}
    \subitem {calculate\_density\_second\_derivs\_scalar\_linear}, 
		\hyperpage{1293}
    \subitem {calculate\_spec\_vol\_array\_linear}, \hyperpage{1294}
    \subitem {calculate\_spec\_vol\_scalar\_linear}, \hyperpage{1295}
    \subitem {calculate\_specvol\_derivs\_linear}, \hyperpage{1296}
    \subitem {int\_density\_dz\_linear}, \hyperpage{1297}
    \subitem {int\_spec\_vol\_dp\_linear}, \hyperpage{1300}
  \item {mom\_eos\_linear::calculate\_density\_derivs\_linear}, 
		\hyperpage{3024}
    \subitem {calculate\_density\_derivs\_array\_linear}, 
		\hyperpage{3024}
    \subitem {calculate\_density\_derivs\_scalar\_linear}, 
		\hyperpage{3025}
  \item {mom\_eos\_linear::calculate\_density\_linear}, 
		\hyperpage{3033}
    \subitem {calculate\_density\_array\_linear}, \hyperpage{3033}
    \subitem {calculate\_density\_scalar\_linear}, \hyperpage{3034}
  \item {mom\_eos\_linear::calculate\_density\_second\_derivs\_linear}, 
		\hyperpage{3041}
    \subitem {calculate\_density\_second\_derivs\_array\_linear}, 
		\hyperpage{3042}
    \subitem {calculate\_density\_second\_derivs\_scalar\_linear}, 
		\hyperpage{3043}
  \item {mom\_eos\_linear::calculate\_spec\_vol\_linear}, 
		\hyperpage{3059}
    \subitem {calculate\_spec\_vol\_array\_linear}, \hyperpage{3060}
    \subitem {calculate\_spec\_vol\_scalar\_linear}, \hyperpage{3060}
  \item {mom\_eos\_nemo}, \hyperpage{1303}
    \subitem {calculate\_compress\_nemo}, \hyperpage{1304}
    \subitem {calculate\_density\_array\_nemo}, \hyperpage{1305}
    \subitem {calculate\_density\_derivs\_array\_nemo}, 
		\hyperpage{1306}
    \subitem {calculate\_density\_derivs\_scalar\_nemo}, 
		\hyperpage{1307}
    \subitem {calculate\_density\_scalar\_nemo}, \hyperpage{1308}
  \item {mom\_eos\_nemo::calculate\_density\_derivs\_nemo}, 
		\hyperpage{3026}
    \subitem {calculate\_density\_derivs\_array\_nemo}, 
		\hyperpage{3026}
    \subitem {calculate\_density\_derivs\_scalar\_nemo}, 
		\hyperpage{3028}
  \item {mom\_eos\_nemo::calculate\_density\_nemo}, \hyperpage{3035}
    \subitem {calculate\_density\_array\_nemo}, \hyperpage{3035}
    \subitem {calculate\_density\_scalar\_nemo}, \hyperpage{3037}
  \item {mom\_eos\_teos10}, \hyperpage{1309}
    \subitem {calculate\_compress\_teos10}, \hyperpage{1310}
    \subitem {calculate\_density\_array\_teos10}, \hyperpage{1311}
    \subitem {calculate\_density\_derivs\_array\_teos10}, 
		\hyperpage{1312}
    \subitem {calculate\_density\_derivs\_scalar\_teos10}, 
		\hyperpage{1312}
    \subitem {calculate\_density\_scalar\_teos10}, \hyperpage{1313}
    \subitem {calculate\_density\_second\_derivs\_array\_teos10}, 
		\hyperpage{1314}
    \subitem {calculate\_density\_second\_derivs\_scalar\_teos10}, 
		\hyperpage{1315}
    \subitem {calculate\_spec\_vol\_array\_teos10}, \hyperpage{1315}
    \subitem {calculate\_spec\_vol\_scalar\_teos10}, \hyperpage{1316}
    \subitem {calculate\_specvol\_derivs\_teos10}, \hyperpage{1317}
  \item {mom\_eos\_teos10::calculate\_density\_derivs\_teos10}, 
		\hyperpage{3029}
    \subitem {calculate\_density\_derivs\_array\_teos10}, 
		\hyperpage{3029}
    \subitem {calculate\_density\_derivs\_scalar\_teos10}, 
		\hyperpage{3030}
  \item {mom\_eos\_teos10::calculate\_density\_second\_derivs\_teos10}, 
		\hyperpage{3044}
    \subitem {calculate\_density\_second\_derivs\_array\_teos10}, 
		\hyperpage{3044}
    \subitem {calculate\_density\_second\_derivs\_scalar\_teos10}, 
		\hyperpage{3045}
  \item {mom\_eos\_teos10::calculate\_density\_teos10}, 
		\hyperpage{3049}
    \subitem {calculate\_density\_array\_teos10}, \hyperpage{3049}
    \subitem {calculate\_density\_scalar\_teos10}, \hyperpage{3050}
  \item {mom\_eos\_teos10::calculate\_spec\_vol\_teos10}, 
		\hyperpage{3061}
    \subitem {calculate\_spec\_vol\_array\_teos10}, \hyperpage{3062}
    \subitem {calculate\_spec\_vol\_scalar\_teos10}, \hyperpage{3063}
  \item {mom\_eos\_unesco}, \hyperpage{1318}
    \subitem {calculate\_compress\_unesco}, \hyperpage{1319}
    \subitem {calculate\_density\_array\_unesco}, \hyperpage{1320}
    \subitem {calculate\_density\_derivs\_unesco}, \hyperpage{1321}
    \subitem {calculate\_density\_scalar\_unesco}, \hyperpage{1322}
    \subitem {calculate\_spec\_vol\_array\_unesco}, \hyperpage{1323}
    \subitem {calculate\_spec\_vol\_scalar\_unesco}, \hyperpage{1324}
  \item {mom\_eos\_unesco::calculate\_density\_unesco}, 
		\hyperpage{3051}
    \subitem {calculate\_density\_array\_unesco}, \hyperpage{3051}
    \subitem {calculate\_density\_scalar\_unesco}, \hyperpage{3052}
  \item {mom\_eos\_unesco::calculate\_spec\_vol\_unesco}, 
		\hyperpage{3063}
    \subitem {calculate\_spec\_vol\_array\_unesco}, \hyperpage{3064}
    \subitem {calculate\_spec\_vol\_scalar\_unesco}, \hyperpage{3065}
  \item {mom\_eos\_wright}, \hyperpage{1325}
    \subitem {calculate\_compress\_wright}, \hyperpage{1326}
    \subitem {calculate\_density\_array\_wright}, \hyperpage{1327}
    \subitem {calculate\_density\_derivs\_array\_wright}, 
		\hyperpage{1328}
    \subitem {calculate\_density\_derivs\_scalar\_wright}, 
		\hyperpage{1328}
    \subitem {calculate\_density\_scalar\_wright}, \hyperpage{1329}
    \subitem {calculate\_density\_second\_derivs\_array\_wright}, 
		\hyperpage{1330}
    \subitem {calculate\_density\_second\_derivs\_scalar\_wright}, 
		\hyperpage{1331}
    \subitem {calculate\_spec\_vol\_array\_wright}, \hyperpage{1332}
    \subitem {calculate\_spec\_vol\_scalar\_wright}, \hyperpage{1333}
    \subitem {calculate\_specvol\_derivs\_wright}, \hyperpage{1333}
    \subitem {int\_density\_dz\_wright}, \hyperpage{1334}
    \subitem {int\_spec\_vol\_dp\_wright}, \hyperpage{1338}
  \item {mom\_eos\_wright::calculate\_density\_derivs\_wright}, 
		\hyperpage{3031}
    \subitem {calculate\_density\_derivs\_array\_wright}, 
		\hyperpage{3031}
    \subitem {calculate\_density\_derivs\_scalar\_wright}, 
		\hyperpage{3032}
  \item {mom\_eos\_wright::calculate\_density\_second\_derivs\_wright}, 
		\hyperpage{3046}
    \subitem {calculate\_density\_second\_derivs\_array\_wright}, 
		\hyperpage{3046}
    \subitem {calculate\_density\_second\_derivs\_scalar\_wright}, 
		\hyperpage{3048}
  \item {mom\_eos\_wright::calculate\_density\_wright}, 
		\hyperpage{3053}
    \subitem {calculate\_density\_array\_wright}, \hyperpage{3054}
    \subitem {calculate\_density\_scalar\_wright}, \hyperpage{3054}
  \item {mom\_eos\_wright::calculate\_spec\_vol\_wright}, 
		\hyperpage{3066}
    \subitem {calculate\_spec\_vol\_array\_wright}, \hyperpage{3066}
    \subitem {calculate\_spec\_vol\_scalar\_wright}, \hyperpage{3067}
  \item {mom\_error}
    \subitem {mom\_error\_handler}, \hyperpage{1344}
  \item {mom\_error\_handler}, \hyperpage{1341}
    \subitem {assert}, \hyperpage{1342}
    \subitem {calltree\_enter}, \hyperpage{1343}
    \subitem {calltree\_leave}, \hyperpage{1343}
    \subitem {calltree\_waypoint}, \hyperpage{1343}
    \subitem {mom\_error}, \hyperpage{1344}
    \subitem {mom\_mesg}, \hyperpage{1344}
    \subitem {mom\_set\_verbosity}, \hyperpage{1345}
    \subitem {mom\_verbose\_enough}, \hyperpage{1345}
  \item {mom\_file\_exists}
    \subitem {mom\_io}, \hyperpage{1718}
    \subitem {mom\_io::file\_exists}, \hyperpage{3209}
  \item {mom\_file\_parser}, \hyperpage{1346}
    \subitem {clearparameterblock}, \hyperpage{1349}
    \subitem {close\_param\_file}, \hyperpage{1349}
    \subitem {closemultilinecomment}, \hyperpage{1351}
    \subitem {closeparameterblock}, \hyperpage{1351}
    \subitem {convert\_date\_to\_string}, \hyperpage{1352}
    \subitem {flag\_line\_as\_read}, \hyperpage{1352}
    \subitem {get\_param\_char}, \hyperpage{1353}
    \subitem {get\_param\_char\_array}, \hyperpage{1354}
    \subitem {get\_param\_int}, \hyperpage{1355}
    \subitem {get\_param\_int\_array}, \hyperpage{1357}
    \subitem {get\_param\_logical}, \hyperpage{1358}
    \subitem {get\_param\_real}, \hyperpage{1359}
    \subitem {get\_param\_real\_array}, \hyperpage{1361}
    \subitem {get\_param\_time}, \hyperpage{1362}
    \subitem {get\_variable\_line}, \hyperpage{1364}
    \subitem {lastnoncommentindex}, \hyperpage{1368}
    \subitem {lastnoncommentnonblank}, \hyperpage{1368}
    \subitem {log\_param\_char}, \hyperpage{1369}
    \subitem {log\_param\_int}, \hyperpage{1370}
    \subitem {log\_param\_int\_array}, \hyperpage{1371}
    \subitem {log\_param\_logical}, \hyperpage{1372}
    \subitem {log\_param\_real}, \hyperpage{1373}
    \subitem {log\_param\_real\_array}, \hyperpage{1374}
    \subitem {log\_param\_time}, \hyperpage{1375}
    \subitem {log\_version\_cs}, \hyperpage{1377}
    \subitem {log\_version\_plain}, \hyperpage{1377}
    \subitem {open\_param\_file}, \hyperpage{1378}
    \subitem {openmultilinecomment}, \hyperpage{1380}
    \subitem {openparameterblock}, \hyperpage{1380}
    \subitem {overridewarninghasbeenissued}, \hyperpage{1381}
    \subitem {popblocklevel}, \hyperpage{1381}
    \subitem {populate\_param\_data}, \hyperpage{1382}
    \subitem {pushblocklevel}, \hyperpage{1383}
    \subitem {read\_param\_char}, \hyperpage{1384}
    \subitem {read\_param\_char\_array}, \hyperpage{1384}
    \subitem {read\_param\_int}, \hyperpage{1385}
    \subitem {read\_param\_int\_array}, \hyperpage{1386}
    \subitem {read\_param\_logical}, \hyperpage{1387}
    \subitem {read\_param\_real}, \hyperpage{1387}
    \subitem {read\_param\_real\_array}, \hyperpage{1388}
    \subitem {read\_param\_time}, \hyperpage{1389}
    \subitem {removecomments}, \hyperpage{1390}
    \subitem {replacetabs}, \hyperpage{1391}
    \subitem {simplifywhitespace}, \hyperpage{1391}
    \subitem {strip\_quotes}, \hyperpage{1392}
  \item {mom\_file\_parser::file\_data\_type}, \hyperpage{3208}
  \item {mom\_file\_parser::get\_param}, \hyperpage{3241}
    \subitem {get\_param\_char}, \hyperpage{3242}
    \subitem {get\_param\_char\_array}, \hyperpage{3243}
    \subitem {get\_param\_int}, \hyperpage{3244}
    \subitem {get\_param\_int\_array}, \hyperpage{3246}
    \subitem {get\_param\_logical}, \hyperpage{3247}
    \subitem {get\_param\_real}, \hyperpage{3248}
    \subitem {get\_param\_real\_array}, \hyperpage{3250}
    \subitem {get\_param\_time}, \hyperpage{3251}
  \item {mom\_file\_parser::link\_parameter}, \hyperpage{3329}
  \item {mom\_file\_parser::log\_param}, \hyperpage{3333}
    \subitem {log\_param\_char}, \hyperpage{3334}
    \subitem {log\_param\_int}, \hyperpage{3335}
    \subitem {log\_param\_int\_array}, \hyperpage{3336}
    \subitem {log\_param\_logical}, \hyperpage{3337}
    \subitem {log\_param\_real}, \hyperpage{3338}
    \subitem {log\_param\_real\_array}, \hyperpage{3339}
    \subitem {log\_param\_time}, \hyperpage{3340}
  \item {mom\_file\_parser::log\_version}, \hyperpage{3342}
    \subitem {log\_version\_cs}, \hyperpage{3342}
    \subitem {log\_version\_plain}, \hyperpage{3343}
  \item {mom\_file\_parser::param\_file\_type}, \hyperpage{3456}
  \item {mom\_file\_parser::parameter\_block}, \hyperpage{3457}
  \item {mom\_file\_parser::read\_param}, \hyperpage{3506}
    \subitem {read\_param\_char}, \hyperpage{3507}
    \subitem {read\_param\_char\_array}, \hyperpage{3507}
    \subitem {read\_param\_int}, \hyperpage{3508}
    \subitem {read\_param\_int\_array}, \hyperpage{3509}
    \subitem {read\_param\_logical}, \hyperpage{3510}
    \subitem {read\_param\_real}, \hyperpage{3510}
    \subitem {read\_param\_real\_array}, \hyperpage{3511}
    \subitem {read\_param\_time}, \hyperpage{3512}
  \item {mom\_fixed\_initialization}, \hyperpage{1392}
    \subitem {mom\_initialize\_fixed}, \hyperpage{1393}
    \subitem {mom\_initialize\_topography}, \hyperpage{1394}
  \item {mom\_forcing\_chksum}
    \subitem {mom\_forcing\_type}, \hyperpage{1434}
  \item {mom\_forcing\_type}, \hyperpage{1396}
    \subitem {allocate\_forcing\_by\_group}, \hyperpage{1399}
    \subitem {allocate\_forcing\_by\_ref}, \hyperpage{1401}
    \subitem {allocate\_mech\_forcing\_by\_group}, \hyperpage{1402}
    \subitem {allocate\_mech\_forcing\_from\_ref}, \hyperpage{1403}
    \subitem {calculatebuoyancyflux1d}, \hyperpage{1403}
    \subitem {calculatebuoyancyflux2d}, \hyperpage{1405}
    \subitem {copy\_back\_forcing\_fields}, \hyperpage{1407}
    \subitem {copy\_common\_forcing\_fields}, \hyperpage{1407}
    \subitem {deallocate\_forcing\_type}, \hyperpage{1408}
    \subitem {deallocate\_mech\_forcing}, \hyperpage{1409}
    \subitem {extractfluxes1d}, \hyperpage{1409}
    \subitem {extractfluxes2d}, \hyperpage{1416}
    \subitem {fluxes\_accumulate}, \hyperpage{1418}
    \subitem {forcing\_accumulate}, \hyperpage{1421}
    \subitem {forcing\_diagnostics}, \hyperpage{1421}
    \subitem {forcing\_singlepointprint}, \hyperpage{1429}
    \subitem {get\_forcing\_groups}, \hyperpage{1430}
    \subitem {get\_mech\_forcing\_groups}, \hyperpage{1431}
    \subitem {get\_net\_mass\_forcing}, \hyperpage{1432}
    \subitem {mech\_forcing\_diags}, \hyperpage{1433}
    \subitem {mech\_forcing\_singlepointprint}, \hyperpage{1434}
    \subitem {mom\_forcing\_chksum}, \hyperpage{1434}
    \subitem {mom\_mech\_forcing\_chksum}, \hyperpage{1436}
    \subitem {myalloc}, \hyperpage{1437}
    \subitem {register\_forcing\_type\_diags}, \hyperpage{1437}
    \subitem {rotate\_forcing}, \hyperpage{1447}
    \subitem {rotate\_mech\_forcing}, \hyperpage{1449}
    \subitem {set\_derived\_forcing\_fields}, \hyperpage{1450}
    \subitem {set\_net\_mass\_forcing}, \hyperpage{1451}
  \item {mom\_forcing\_type::allocate\_forcing\_type}, \hyperpage{2966}
    \subitem {allocate\_forcing\_by\_group}, \hyperpage{2966}
    \subitem {allocate\_forcing\_by\_ref}, \hyperpage{2967}
  \item {mom\_forcing\_type::allocate\_mech\_forcing}, \hyperpage{2968}
    \subitem {allocate\_mech\_forcing\_by\_group}, \hyperpage{2969}
    \subitem {allocate\_mech\_forcing\_from\_ref}, \hyperpage{2970}
  \item {mom\_forcing\_type::forcing}, \hyperpage{3219}
  \item {mom\_forcing\_type::forcing\_diags}, \hyperpage{3222}
  \item {mom\_forcing\_type::mech\_forcing}, \hyperpage{3348}
  \item {mom\_full\_convection}, \hyperpage{1451}
    \subitem {full\_convection}, \hyperpage{1452}
    \subitem {is\_unstable}, \hyperpage{1455}
    \subitem {smoothed\_drdt\_drds}, \hyperpage{1457}
  \item {mom\_generic\_flux\_init}
    \subitem {mom\_generic\_tracer}, \hyperpage{1463}
  \item {mom\_generic\_tracer}, \hyperpage{1459}
    \subitem {end\_mom\_generic\_tracer}, \hyperpage{1460}
    \subitem {initialize\_mom\_generic\_tracer}, \hyperpage{1460}
    \subitem {mom\_generic\_flux\_init}, \hyperpage{1463}
    \subitem {mom\_generic\_tracer\_column\_physics}, \hyperpage{1463}
    \subitem {mom\_generic\_tracer\_fluxes\_accumulate}, 
		\hyperpage{1466}
    \subitem {mom\_generic\_tracer\_get}, \hyperpage{1467}
    \subitem {mom\_generic\_tracer\_min\_max}, \hyperpage{1467}
    \subitem {mom\_generic\_tracer\_stock}, \hyperpage{1469}
    \subitem {mom\_generic\_tracer\_surface\_state}, \hyperpage{1470}
    \subitem {register\_mom\_generic\_tracer}, \hyperpage{1471}
  \item {mom\_generic\_tracer::mom\_generic\_tracer\_cs}, 
		\hyperpage{3380}
  \item {mom\_generic\_tracer\_column\_physics}
    \subitem {mom\_generic\_tracer}, \hyperpage{1463}
  \item {mom\_generic\_tracer\_fluxes\_accumulate}
    \subitem {mom\_generic\_tracer}, \hyperpage{1466}
  \item {mom\_generic\_tracer\_get}
    \subitem {mom\_generic\_tracer}, \hyperpage{1467}
  \item {mom\_generic\_tracer\_min\_max}
    \subitem {mom\_generic\_tracer}, \hyperpage{1467}
  \item {mom\_generic\_tracer\_stock}
    \subitem {mom\_generic\_tracer}, \hyperpage{1469}
  \item {mom\_generic\_tracer\_surface\_state}
    \subitem {mom\_generic\_tracer}, \hyperpage{1470}
  \item {mom\_geothermal}, \hyperpage{1473}
    \subitem {geothermal\_end}, \hyperpage{1474}
    \subitem {geothermal\_entraining}, \hyperpage{1474}
    \subitem {geothermal\_in\_place}, \hyperpage{1479}
    \subitem {geothermal\_init}, \hyperpage{1481}
  \item {mom\_geothermal::geothermal\_cs}, \hyperpage{3239}
  \item {mom\_get\_input}, \hyperpage{1483}
    \subitem {get\_mom\_input}, \hyperpage{1483}
  \item {mom\_get\_input::directories}, \hyperpage{3157}
  \item {mom\_grid}, \hyperpage{1485}
    \subitem {adcroft\_reciprocal}, \hyperpage{1486}
    \subitem {allocate\_metrics}, \hyperpage{1486}
    \subitem {get\_global\_grid\_size}, \hyperpage{1487}
    \subitem {ispointincell}, \hyperpage{1487}
    \subitem {mom\_grid\_end}, \hyperpage{1488}
    \subitem {mom\_grid\_init}, \hyperpage{1489}
    \subitem {rescale\_grid\_bathymetry}, \hyperpage{1492}
    \subitem {set\_derived\_metrics}, \hyperpage{1493}
    \subitem {set\_first\_direction}, \hyperpage{1493}
  \item {mom\_grid::ocean\_grid\_type}, \hyperpage{3407}
  \item {mom\_grid\_end}
    \subitem {mom\_grid}, \hyperpage{1488}
  \item {mom\_grid\_init}
    \subitem {mom\_grid}, \hyperpage{1489}
  \item {mom\_grid\_initialize}, \hyperpage{1494}
    \subitem {adcroft\_reciprocal}, \hyperpage{1495}
    \subitem {dl}, \hyperpage{1495}
    \subitem {ds\_di}, \hyperpage{1497}
    \subitem {ds\_dj}, \hyperpage{1497}
    \subitem {dx\_di}, \hyperpage{1498}
    \subitem {dy\_dj}, \hyperpage{1498}
    \subitem {extrapolate\_metric}, \hyperpage{1499}
    \subitem {find\_root}, \hyperpage{1499}
    \subitem {grid\_metrics\_chksum}, \hyperpage{1501}
    \subitem {initialize\_masks}, \hyperpage{1502}
    \subitem {int\_di\_dx}, \hyperpage{1504}
    \subitem {int\_dj\_dy}, \hyperpage{1504}
    \subitem {set\_grid\_metrics}, \hyperpage{1505}
    \subitem {set\_grid\_metrics\_cartesian}, \hyperpage{1506}
    \subitem {set\_grid\_metrics\_from\_mosaic}, \hyperpage{1508}
    \subitem {set\_grid\_metrics\_mercator}, \hyperpage{1511}
    \subitem {set\_grid\_metrics\_spherical}, \hyperpage{1514}
  \item {mom\_grid\_initialize::gps}, \hyperpage{3253}
  \item {mom\_hor\_index}, \hyperpage{1516}
    \subitem {hit\_assign}, \hyperpage{1517}
    \subitem {hor\_index\_init}, \hyperpage{1517}
    \subitem {rotate\_hor\_index}, \hyperpage{1518}
  \item {mom\_hor\_index::assignment(=)}, \hyperpage{2973}
    \subitem {hit\_assign}, \hyperpage{2973}
  \item {mom\_hor\_index::hor\_index\_type}, \hyperpage{3263}
  \item {mom\_hor\_visc}, \hyperpage{1519}
    \subitem {align\_aniso\_tensor\_to\_grid}, \hyperpage{1523}
    \subitem {hor\_visc\_end}, \hyperpage{1523}
    \subitem {hor\_visc\_init}, \hyperpage{1524}
    \subitem {horizontal\_viscosity}, \hyperpage{1534}
    \subitem {smooth\_gme}, \hyperpage{1550}
  \item {mom\_hor\_visc::hor\_visc\_cs}, \hyperpage{3266}
  \item {mom\_horizontal\_regridding}, \hyperpage{1551}
    \subitem {fill\_boundaries\_int}, \hyperpage{1552}
    \subitem {fill\_boundaries\_real}, \hyperpage{1552}
    \subitem {fill\_miss\_2d}, \hyperpage{1553}
    \subitem {horiz\_interp\_and\_extrap\_tracer\_fms\_id}, 
		\hyperpage{1556}
    \subitem {horiz\_interp\_and\_extrap\_tracer\_record}, 
		\hyperpage{1560}
    \subitem {meshgrid}, \hyperpage{1566}
    \subitem {mystats}, \hyperpage{1566}
    \subitem {smooth\_heights}, \hyperpage{1567}
  \item {mom\_horizontal\_regridding::fill\_boundaries}, 
		\hyperpage{3211}
    \subitem {fill\_boundaries\_int}, \hyperpage{3211}
    \subitem {fill\_boundaries\_real}, \hyperpage{3211}
  \item {mom\_horizontal\_regridding::horiz\_interp\_and\_extrap\_tracer}, 
		\hyperpage{3271}
    \subitem {horiz\_interp\_and\_extrap\_tracer\_fms\_id}, 
		\hyperpage{3271}
    \subitem {horiz\_interp\_and\_extrap\_tracer\_record}, 
		\hyperpage{3276}
  \item {mom\_ice\_shelf}, \hyperpage{1569}
    \subitem {add\_shelf\_flux}, \hyperpage{1570}
    \subitem {add\_shelf\_forces}, \hyperpage{1573}
    \subitem {add\_shelf\_pressure}, \hyperpage{1574}
    \subitem {change\_thickness\_using\_melt}, \hyperpage{1575}
    \subitem {ice\_shelf\_end}, \hyperpage{1576}
    \subitem {ice\_shelf\_save\_restart}, \hyperpage{1577}
    \subitem {initialize\_ice\_shelf}, \hyperpage{1577}
    \subitem {initialize\_shelf\_mass}, \hyperpage{1585}
    \subitem {shelf\_calc\_flux}, \hyperpage{1586}
    \subitem {solo\_step\_ice\_shelf}, \hyperpage{1593}
    \subitem {update\_shelf\_mass}, \hyperpage{1594}
  \item {mom\_ice\_shelf::ice\_shelf\_cs}, \hyperpage{3284}
  \item {mom\_ice\_shelf\_dynamics}, \hyperpage{1595}
    \subitem {apply\_boundary\_values}, \hyperpage{1597}
    \subitem {bilinear\_shape\_fn\_grid}, \hyperpage{1599}
    \subitem {bilinear\_shape\_functions}, \hyperpage{1600}
    \subitem {bilinear\_shape\_functions\_subgrid}, \hyperpage{1602}
    \subitem {calc\_shelf\_driving\_stress}, \hyperpage{1602}
    \subitem {calc\_shelf\_visc}, \hyperpage{1605}
    \subitem {calve\_to\_mask}, \hyperpage{1606}
    \subitem {cg\_action}, \hyperpage{1607}
    \subitem {cg\_action\_subgrid\_basal}, \hyperpage{1610}
    \subitem {cg\_diagonal\_subgrid\_basal}, \hyperpage{1611}
    \subitem {ice\_shelf\_advect}, \hyperpage{1612}
    \subitem {ice\_shelf\_advect\_temp\_x}, \hyperpage{1613}
    \subitem {ice\_shelf\_advect\_temp\_y}, \hyperpage{1616}
    \subitem {ice\_shelf\_advect\_thickness\_x}, \hyperpage{1618}
    \subitem {ice\_shelf\_advect\_thickness\_y}, \hyperpage{1620}
    \subitem {ice\_shelf\_dyn\_end}, \hyperpage{1621}
    \subitem {ice\_shelf\_min\_thickness\_calve}, \hyperpage{1622}
    \subitem {ice\_shelf\_solve\_inner}, \hyperpage{1622}
    \subitem {ice\_shelf\_solve\_outer}, \hyperpage{1627}
    \subitem {ice\_shelf\_temp}, \hyperpage{1630}
    \subitem {ice\_time\_step\_cfl}, \hyperpage{1632}
    \subitem {init\_boundary\_values}, \hyperpage{1633}
    \subitem {initialize\_diagnostic\_fields}, \hyperpage{1634}
    \subitem {initialize\_ice\_shelf\_dyn}, \hyperpage{1635}
    \subitem {interpolate\_h\_to\_b}, \hyperpage{1639}
    \subitem {matrix\_diagonal}, \hyperpage{1640}
    \subitem {quad\_area}, \hyperpage{1642}
    \subitem {register\_ice\_shelf\_dyn\_restarts}, \hyperpage{1642}
    \subitem {shelf\_advance\_front}, \hyperpage{1643}
    \subitem {slope\_limiter}, \hyperpage{1646}
    \subitem {update\_ice\_shelf}, \hyperpage{1646}
    \subitem {update\_od\_ffrac}, \hyperpage{1648}
    \subitem {update\_od\_ffrac\_uncoupled}, \hyperpage{1648}
    \subitem {update\_velocity\_masks}, \hyperpage{1649}
  \item {mom\_ice\_shelf\_dynamics::ice\_shelf\_dyn\_cs}, 
		\hyperpage{3289}
  \item {mom\_ice\_shelf\_dynamics::loop\_bounds\_type}, 
		\hyperpage{3344}
  \item {mom\_ice\_shelf\_initialize}, \hyperpage{1652}
    \subitem {initialize\_ice\_thickness}, \hyperpage{1652}
    \subitem {initialize\_ice\_thickness\_channel}, \hyperpage{1653}
    \subitem {initialize\_ice\_thickness\_from\_file}, \hyperpage{1654}
  \item {mom\_ice\_shelf\_state}, \hyperpage{1656}
    \subitem {ice\_shelf\_state\_end}, \hyperpage{1656}
    \subitem {ice\_shelf\_state\_init}, \hyperpage{1657}
  \item {mom\_ice\_shelf\_state::ice\_shelf\_state}, \hyperpage{3293}
  \item {mom\_initialize\_coord}
    \subitem {mom\_coord\_initialization}, \hyperpage{716}
  \item {mom\_initialize\_fixed}
    \subitem {mom\_fixed\_initialization}, \hyperpage{1393}
  \item {mom\_initialize\_rotation}
    \subitem {mom\_shared\_initialization}, \hyperpage{2339}
  \item {mom\_initialize\_state}
    \subitem {mom\_state\_initialization}, \hyperpage{2397}
  \item {mom\_initialize\_topography}
    \subitem {mom\_fixed\_initialization}, \hyperpage{1394}
  \item {mom\_initialize\_tracer\_from\_z}
    \subitem {mom\_tracer\_initialization\_from\_z}, \hyperpage{2605}
  \item {mom\_int\_tide\_input}, \hyperpage{1657}
    \subitem {find\_n2\_bottom}, \hyperpage{1658}
    \subitem {int\_tide\_input\_end}, \hyperpage{1660}
    \subitem {int\_tide\_input\_init}, \hyperpage{1660}
    \subitem {set\_int\_tide\_input}, \hyperpage{1662}
  \item {mom\_int\_tide\_input::int\_tide\_input\_cs}, \hyperpage{3308}
  \item {mom\_int\_tide\_input::int\_tide\_input\_type}, 
		\hyperpage{3310}
  \item {mom\_interface\_heights}, \hyperpage{1664}
    \subitem {find\_eta\_2d}, \hyperpage{1664}
    \subitem {find\_eta\_3d}, \hyperpage{1666}
  \item {mom\_interface\_heights::find\_eta}, \hyperpage{3214}
    \subitem {find\_eta\_2d}, \hyperpage{3215}
    \subitem {find\_eta\_3d}, \hyperpage{3217}
  \item {mom\_internal\_tides}, \hyperpage{1668}
    \subitem {correct\_halo\_rotation}, \hyperpage{1670}
    \subitem {get\_lowmode\_loss}, \hyperpage{1671}
    \subitem {internal\_tides\_end}, \hyperpage{1671}
    \subitem {internal\_tides\_init}, \hyperpage{1672}
    \subitem {itidal\_lowmode\_loss}, \hyperpage{1678}
    \subitem {merid\_flux\_en}, \hyperpage{1680}
    \subitem {ppm\_angular\_advect}, \hyperpage{1681}
    \subitem {ppm\_limit\_pos}, \hyperpage{1682}
    \subitem {ppm\_reconstruction\_x}, \hyperpage{1683}
    \subitem {ppm\_reconstruction\_y}, \hyperpage{1685}
    \subitem {propagate}, \hyperpage{1686}
    \subitem {propagate\_corner\_spread}, \hyperpage{1688}
    \subitem {propagate\_int\_tide}, \hyperpage{1692}
    \subitem {propagate\_x}, \hyperpage{1698}
    \subitem {propagate\_y}, \hyperpage{1699}
    \subitem {reflect}, \hyperpage{1701}
    \subitem {refract}, \hyperpage{1703}
    \subitem {sum\_en}, \hyperpage{1705}
    \subitem {teleport}, \hyperpage{1705}
    \subitem {zonal\_flux\_en}, \hyperpage{1707}
  \item {mom\_internal\_tides::int\_tide\_cs}, \hyperpage{3304}
  \item {mom\_internal\_tides::loop\_bounds\_type}, \hyperpage{3344}
  \item {mom\_intrinsic\_functions}, \hyperpage{1708}
    \subitem {invcosh}, \hyperpage{1709}
  \item {mom\_io}, \hyperpage{1709}
    \subitem {cmor\_long\_std}, \hyperpage{1711}
    \subitem {create\_file}, \hyperpage{1711}
    \subitem {ensembler}, \hyperpage{1715}
    \subitem {fms\_file\_exists}, \hyperpage{1716}
    \subitem {modify\_vardesc}, \hyperpage{1717}
    \subitem {mom\_file\_exists}, \hyperpage{1718}
    \subitem {mom\_io\_init}, \hyperpage{1718}
    \subitem {mom\_read\_data\_1d}, \hyperpage{1719}
    \subitem {mom\_read\_data\_2d}, \hyperpage{1719}
    \subitem {mom\_read\_data\_3d}, \hyperpage{1720}
    \subitem {mom\_read\_data\_4d}, \hyperpage{1721}
    \subitem {mom\_read\_vector\_2d}, \hyperpage{1721}
    \subitem {mom\_read\_vector\_3d}, \hyperpage{1723}
    \subitem {num\_timelevels}, \hyperpage{1724}
    \subitem {query\_vardesc}, \hyperpage{1725}
    \subitem {read\_axis\_data}, \hyperpage{1727}
    \subitem {reopen\_file}, \hyperpage{1727}
    \subitem {safe\_string\_copy}, \hyperpage{1729}
    \subitem {var\_desc}, \hyperpage{1730}
  \item {mom\_io::file\_exists}, \hyperpage{3209}
    \subitem {fms\_file\_exists}, \hyperpage{3209}
    \subitem {mom\_file\_exists}, \hyperpage{3209}
  \item {mom\_io::mom\_read\_data}, \hyperpage{3382}
    \subitem {mom\_read\_data\_1d}, \hyperpage{3382}
    \subitem {mom\_read\_data\_2d}, \hyperpage{3383}
    \subitem {mom\_read\_data\_3d}, \hyperpage{3384}
    \subitem {mom\_read\_data\_4d}, \hyperpage{3385}
  \item {mom\_io::mom\_read\_vector}, \hyperpage{3385}
    \subitem {mom\_read\_vector\_2d}, \hyperpage{3386}
    \subitem {mom\_read\_vector\_3d}, \hyperpage{3387}
  \item {mom\_io::vardesc}, \hyperpage{3646}
  \item {mom\_io\_init}
    \subitem {mom\_io}, \hyperpage{1718}
  \item {mom\_isopycnal\_slopes}, \hyperpage{1731}
    \subitem {calc\_isoneutral\_slopes}, \hyperpage{1731}
    \subitem {vert\_fill\_ts}, \hyperpage{1736}
  \item {mom\_kappa\_shear}, \hyperpage{1738}
    \subitem {calc\_kappa\_shear\_vertex}, \hyperpage{1739}
    \subitem {calculate\_kappa\_shear}, \hyperpage{1743}
    \subitem {calculate\_projected\_state}, \hyperpage{1747}
    \subitem {find\_kappa\_tke}, \hyperpage{1750}
    \subitem {kappa\_shear\_at\_vertex}, \hyperpage{1757}
    \subitem {kappa\_shear\_column}, \hyperpage{1758}
    \subitem {kappa\_shear\_init}, \hyperpage{1765}
    \subitem {kappa\_shear\_is\_used}, \hyperpage{1767}
  \item {mom\_kappa\_shear::kappa\_shear\_cs}, \hyperpage{3316}
  \item {mom\_lateral\_boundary\_diffusion}, \hyperpage{1768}
    \subitem {boundary\_k\_range}, \hyperpage{1770}
    \subitem {bulk\_average}, \hyperpage{1772}
    \subitem {fluxes\_bulk\_method}, \hyperpage{1773}
    \subitem {fluxes\_layer\_method}, \hyperpage{1777}
    \subitem {harmonic\_mean}, \hyperpage{1780}
    \subitem {lateral\_boundary\_diffusion}, \hyperpage{1780}
    \subitem {lateral\_boundary\_diffusion\_init}, \hyperpage{1783}
    \subitem {near\_boundary\_unit\_tests}, \hyperpage{1784}
    \subitem {test\_boundary\_k\_range}, \hyperpage{1789}
    \subitem {test\_layer\_fluxes}, \hyperpage{1790}
  \item {mom\_lateral\_boundary\_diffusion::lateral\_boundary\_diffusion\_cs}, 
		\hyperpage{3326}
    \subitem {method}, \hyperpage{3328}
    \subitem {surface\_boundary\_scheme}, \hyperpage{3328}
  \item {mom\_lateral\_mixing\_coeffs}, \hyperpage{1790}
    \subitem {calc\_depth\_function}, \hyperpage{1792}
    \subitem {calc\_qg\_leith\_viscosity}, \hyperpage{1793}
    \subitem {calc\_resoln\_function}, \hyperpage{1795}
    \subitem {calc\_slope\_functions}, \hyperpage{1799}
    \subitem {calc\_slope\_functions\_using\_just\_e}, \hyperpage{1800}
    \subitem {calc\_visbeck\_coeffs}, \hyperpage{1802}
    \subitem {varmix\_init}, \hyperpage{1805}
  \item {mom\_lateral\_mixing\_coeffs::varmix\_cs}, \hyperpage{3647}
  \item {mom\_marine\_ice}, \hyperpage{1810}
    \subitem {iceberg\_fluxes}, \hyperpage{1811}
    \subitem {iceberg\_forces}, \hyperpage{1812}
    \subitem {marine\_ice\_init}, \hyperpage{1813}
  \item {mom\_marine\_ice::marine\_ice\_cs}, \hyperpage{3346}
  \item {mom\_mech\_forcing\_chksum}
    \subitem {mom\_forcing\_type}, \hyperpage{1436}
  \item {mom\_meke}, \hyperpage{1814}
    \subitem {meke\_alloc\_register\_restart}, \hyperpage{1818}
    \subitem {meke\_end}, \hyperpage{1819}
    \subitem {meke\_equilibrium}, \hyperpage{1820}
    \subitem {meke\_equilibrium\_restoring}, \hyperpage{1822}
    \subitem {meke\_init}, \hyperpage{1823}
    \subitem {meke\_lengthscales}, \hyperpage{1828}
    \subitem {meke\_lengthscales\_0d}, \hyperpage{1830}
    \subitem {step\_forward\_meke}, \hyperpage{1831}
  \item {mom\_meke::meke\_cs}, \hyperpage{3350}
  \item {mom\_meke\_types::meke\_type}, \hyperpage{3353}
  \item {MOM\_memory.h}
    \subitem {MAX\_FIELDS\_}, \hyperpage{3684}
    \subitem {SYMMETRIC\_MEMORY\_}, \hyperpage{3684}
  \item {MOM\_memory\_macros.h}
    \subitem {NIMEM\_}, \hyperpage{3686}
    \subitem {NIMEMB\_}, \hyperpage{3686}
    \subitem {NIMEMB\_PTR\_}, \hyperpage{3686}
    \subitem {NIMEMB\_SYM\_}, \hyperpage{3686}
    \subitem {NJMEM\_}, \hyperpage{3686}
    \subitem {NJMEMB\_}, \hyperpage{3687}
    \subitem {NJMEMB\_PTR\_}, \hyperpage{3687}
    \subitem {NJMEMB\_SYM\_}, \hyperpage{3687}
    \subitem {NK\_INTERFACE\_}, \hyperpage{3687}
    \subitem {NKMEM0\_}, \hyperpage{3687}
    \subitem {NKMEM\_}, \hyperpage{3687}
    \subitem {SZI\_}, \hyperpage{3687}
  \item {mom\_mesg}
    \subitem {mom\_error\_handler}, \hyperpage{1344}
  \item {mom\_mixed\_layer\_restrat}, \hyperpage{1839}
    \subitem {mixedlayer\_restrat}, \hyperpage{1841}
    \subitem {mixedlayer\_restrat\_bml}, \hyperpage{1842}
    \subitem {mixedlayer\_restrat\_general}, \hyperpage{1845}
    \subitem {mixedlayer\_restrat\_init}, \hyperpage{1851}
    \subitem {mixedlayer\_restrat\_register\_restarts}, 
		\hyperpage{1854}
  \item {mom\_mixed\_layer\_restrat::mixedlayer\_restrat\_cs}, 
		\hyperpage{3358}
  \item {mom\_neutral\_diffusion}, \hyperpage{1854}
    \subitem {absolute\_position}, \hyperpage{1857}
    \subitem {absolute\_positions}, \hyperpage{1857}
    \subitem {calc\_delta\_rho\_and\_derivs}, \hyperpage{1858}
    \subitem {compare\_nsp\_row}, \hyperpage{1860}
    \subitem {delta\_rho\_from\_derivs}, \hyperpage{1860}
    \subitem {find\_neutral\_pos\_full}, \hyperpage{1861}
    \subitem {find\_neutral\_pos\_linear}, \hyperpage{1863}
    \subitem {find\_neutral\_surface\_positions\_continuous}, 
		\hyperpage{1865}
    \subitem {find\_neutral\_surface\_positions\_discontinuous}, 
		\hyperpage{1869}
    \subitem {fv\_diff}, \hyperpage{1874}
    \subitem {fvlsq\_slope}, \hyperpage{1874}
    \subitem {increment\_interface}, \hyperpage{1875}
    \subitem {interface\_scalar}, \hyperpage{1876}
    \subitem {interpolate\_for\_nondim\_position}, \hyperpage{1877}
    \subitem {mark\_unstable\_cells}, \hyperpage{1877}
    \subitem {ndiff\_unit\_tests\_continuous}, \hyperpage{1878}
    \subitem {ndiff\_unit\_tests\_discontinuous}, \hyperpage{1882}
    \subitem {neutral\_diffusion}, \hyperpage{1885}
    \subitem {neutral\_diffusion\_calc\_coeffs}, \hyperpage{1888}
    \subitem {neutral\_diffusion\_end}, \hyperpage{1892}
    \subitem {neutral\_diffusion\_init}, \hyperpage{1892}
    \subitem {neutral\_diffusion\_unit\_tests}, \hyperpage{1895}
    \subitem {neutral\_surface\_flux}, \hyperpage{1895}
    \subitem {neutral\_surface\_t\_eval}, \hyperpage{1897}
    \subitem {plm\_diff}, \hyperpage{1899}
    \subitem {ppm\_ave}, \hyperpage{1900}
    \subitem {ppm\_edge}, \hyperpage{1901}
    \subitem {ppm\_left\_right\_edge\_values}, \hyperpage{1902}
    \subitem {search\_other\_column}, \hyperpage{1903}
    \subitem {signum}, \hyperpage{1904}
    \subitem {test\_data1d}, \hyperpage{1905}
    \subitem {test\_data1di}, \hyperpage{1905}
    \subitem {test\_fv\_diff}, \hyperpage{1906}
    \subitem {test\_fvlsq\_slope}, \hyperpage{1907}
    \subitem {test\_ifndp}, \hyperpage{1908}
    \subitem {test\_nsp}, \hyperpage{1909}
    \subitem {test\_rnp}, \hyperpage{1910}
  \item {mom\_neutral\_diffusion::neutral\_diffusion\_cs}, 
		\hyperpage{3393}
  \item {mom\_obsolete\_diagnostics}, \hyperpage{1911}
    \subitem {found\_in\_diagtable}, \hyperpage{1911}
    \subitem {register\_obsolete\_diagnostics}, \hyperpage{1912}
  \item {mom\_obsolete\_params}, \hyperpage{1913}
    \subitem {find\_obsolete\_params}, \hyperpage{1913}
    \subitem {obsolete\_char}, \hyperpage{1914}
    \subitem {obsolete\_int}, \hyperpage{1915}
    \subitem {obsolete\_logical}, \hyperpage{1916}
    \subitem {obsolete\_real}, \hyperpage{1916}
  \item {mom\_ocmip2\_cfc}, \hyperpage{1917}
    \subitem {flux\_init\_ocmip2\_cfc}, \hyperpage{1918}
    \subitem {init\_tracer\_cfc}, \hyperpage{1919}
    \subitem {initialize\_ocmip2\_cfc}, \hyperpage{1920}
    \subitem {ocmip2\_cfc\_column\_physics}, \hyperpage{1921}
    \subitem {ocmip2\_cfc\_end}, \hyperpage{1923}
    \subitem {ocmip2\_cfc\_stock}, \hyperpage{1923}
    \subitem {ocmip2\_cfc\_surface\_state}, \hyperpage{1924}
    \subitem {register\_ocmip2\_cfc}, \hyperpage{1925}
  \item {mom\_ocmip2\_cfc::ocmip2\_cfc\_cs}, \hyperpage{3427}
  \item {MOM\_oda\_driver\_mod}, \hyperpage{1928}
  \item {mom\_oda\_driver\_mod}, \hyperpage{1928}
    \subitem {apply\_oda\_tracer\_increments}, \hyperpage{1929}
    \subitem {get\_posterior\_tracer}, \hyperpage{1930}
    \subitem {init\_ocean\_ensemble}, \hyperpage{1931}
    \subitem {init\_oda}, \hyperpage{1931}
    \subitem {oda}, \hyperpage{1934}
    \subitem {oda\_end}, \hyperpage{1935}
    \subitem {save\_obs\_diff}, \hyperpage{1935}
    \subitem {set\_analysis\_time}, \hyperpage{1935}
    \subitem {set\_prior\_tracer}, \hyperpage{1936}
  \item {mom\_oda\_driver\_mod::oda\_cs}, \hyperpage{3431}
  \item {mom\_oda\_driver\_mod::ptr\_mpp\_domain}, \hyperpage{3492}
  \item {mom\_offline\_aux}, \hyperpage{1937}
    \subitem {distribute\_residual\_uh\_barotropic}, \hyperpage{1938}
    \subitem {distribute\_residual\_uh\_upwards}, \hyperpage{1939}
    \subitem {distribute\_residual\_vh\_barotropic}, \hyperpage{1941}
    \subitem {distribute\_residual\_vh\_upwards}, \hyperpage{1942}
    \subitem {limit\_mass\_flux\_3d}, \hyperpage{1943}
    \subitem {offline\_add\_diurnal\_sw}, \hyperpage{1945}
    \subitem {update\_h\_horizontal\_flux}, \hyperpage{1946}
    \subitem {update\_h\_vertical\_flux}, \hyperpage{1947}
    \subitem {update\_offline\_from\_arrays}, \hyperpage{1948}
    \subitem {update\_offline\_from\_files}, \hyperpage{1949}
  \item {mom\_offline\_main}, \hyperpage{1952}
    \subitem {extract\_offline\_main}, \hyperpage{1955}
    \subitem {insert\_offline\_main}, \hyperpage{1956}
    \subitem {offline\_advection\_ale}, \hyperpage{1957}
    \subitem {offline\_advection\_layer}, \hyperpage{1960}
    \subitem {offline\_diabatic\_ale}, \hyperpage{1963}
    \subitem {offline\_fw\_fluxes\_into\_ocean}, \hyperpage{1965}
    \subitem {offline\_fw\_fluxes\_out\_ocean}, \hyperpage{1966}
    \subitem {offline\_redistribute\_residual}, \hyperpage{1967}
    \subitem {offline\_transport\_end}, \hyperpage{1970}
    \subitem {offline\_transport\_init}, \hyperpage{1970}
    \subitem {post\_offline\_convergence\_diags}, \hyperpage{1973}
    \subitem {read\_all\_input}, \hyperpage{1973}
    \subitem {register\_diags\_offline\_transport}, \hyperpage{1974}
    \subitem {remaining\_transport\_sum}, \hyperpage{1975}
    \subitem {update\_offline\_fields}, \hyperpage{1976}
  \item {mom\_offline\_main::offline\_transport\_cs}, \hyperpage{3433}
    \subitem {start\_index}, \hyperpage{3438}
  \item {mom\_opacity}, \hyperpage{1977}
    \subitem {absorbremainingsw}, \hyperpage{1979}
    \subitem {extract\_optics\_fields}, \hyperpage{1983}
    \subitem {extract\_optics\_slice}, \hyperpage{1984}
    \subitem {opacity\_end}, \hyperpage{1985}
    \subitem {opacity\_from\_chl}, \hyperpage{1985}
    \subitem {opacity\_init}, \hyperpage{1988}
    \subitem {opacity\_manizza}, \hyperpage{1991}
    \subitem {opacity\_morel}, \hyperpage{1991}
    \subitem {optics\_nbands}, \hyperpage{1992}
    \subitem {set\_opacity}, \hyperpage{1992}
    \subitem {sumswoverbands}, \hyperpage{1995}
    \subitem {sw\_pen\_frac\_morel}, \hyperpage{1997}
  \item {mom\_opacity::opacity\_cs}, \hyperpage{3442}
  \item {mom\_opacity::optics\_type}, \hyperpage{3445}
  \item {mom\_open\_boundary}, \hyperpage{1998}
    \subitem {adjustsegmentetatofitbathymetry}, \hyperpage{2001}
    \subitem {allocate\_obc\_segment\_data}, \hyperpage{2003}
    \subitem {deallocate\_obc\_segment\_data}, \hyperpage{2004}
    \subitem {file\_obc\_end}, \hyperpage{2005}
    \subitem {fill\_temp\_salt\_segments}, \hyperpage{2005}
    \subitem {flood\_fill}, \hyperpage{2006}
    \subitem {flood\_fill2}, \hyperpage{2007}
    \subitem {gradient\_at\_q\_points}, \hyperpage{2008}
    \subitem {initialize\_obc\_tides}, \hyperpage{2010}
    \subitem {initialize\_segment\_data}, \hyperpage{2012}
    \subitem {lookup\_seg\_field}, \hyperpage{2016}
    \subitem {mask\_outside\_obcs}, \hyperpage{2016}
    \subitem {obc\_registry\_init}, \hyperpage{2018}
    \subitem {open\_boundary\_apply\_normal\_flow}, \hyperpage{2019}
    \subitem {open\_boundary\_config}, \hyperpage{2019}
    \subitem {open\_boundary\_dealloc}, \hyperpage{2023}
    \subitem {open\_boundary\_end}, \hyperpage{2024}
    \subitem {open\_boundary\_impose\_land\_mask}, \hyperpage{2024}
    \subitem {open\_boundary\_impose\_normal\_slope}, \hyperpage{2026}
    \subitem {open\_boundary\_init}, \hyperpage{2027}
    \subitem {open\_boundary\_query}, \hyperpage{2028}
    \subitem {open\_boundary\_register\_restarts}, \hyperpage{2029}
    \subitem {open\_boundary\_test\_extern\_h}, \hyperpage{2031}
    \subitem {open\_boundary\_test\_extern\_uv}, \hyperpage{2031}
    \subitem {open\_boundary\_zero\_normal\_flow}, \hyperpage{2032}
    \subitem {parse\_for\_tracer\_reservoirs}, \hyperpage{2033}
    \subitem {parse\_segment\_data\_str}, \hyperpage{2034}
    \subitem {parse\_segment\_manifest\_str}, \hyperpage{2035}
    \subitem {parse\_segment\_param\_real}, \hyperpage{2036}
    \subitem {parse\_segment\_str}, \hyperpage{2037}
    \subitem {radiation\_open\_bdry\_conds}, \hyperpage{2039}
    \subitem {register\_file\_obc}, \hyperpage{2053}
    \subitem {register\_obc}, \hyperpage{2054}
    \subitem {register\_segment\_tracer}, \hyperpage{2054}
    \subitem {register\_temp\_salt\_segments}, \hyperpage{2056}
    \subitem {rotate\_obc\_config}, \hyperpage{2056}
    \subitem {rotate\_obc\_init}, \hyperpage{2058}
    \subitem {rotate\_obc\_segment\_config}, \hyperpage{2058}
    \subitem {segment\_tracer\_registry\_end}, \hyperpage{2060}
    \subitem {segment\_tracer\_registry\_init}, \hyperpage{2061}
    \subitem {set\_tracer\_data}, \hyperpage{2061}
    \subitem {setup\_obc\_tracer\_reservoirs}, \hyperpage{2063}
    \subitem {setup\_segment\_indices}, \hyperpage{2063}
    \subitem {setup\_u\_point\_obc}, \hyperpage{2065}
    \subitem {setup\_v\_point\_obc}, \hyperpage{2067}
    \subitem {update\_obc\_ramp}, \hyperpage{2070}
    \subitem {update\_obc\_segment\_data}, \hyperpage{2070}
    \subitem {update\_segment\_tracer\_reservoirs}, \hyperpage{2079}
  \item {mom\_open\_boundary::file\_obc\_cs}, \hyperpage{3210}
  \item {mom\_open\_boundary::obc\_registry\_type}, \hyperpage{3397}
  \item {mom\_open\_boundary::obc\_segment\_data\_type}, 
		\hyperpage{3397}
  \item {mom\_open\_boundary::obc\_segment\_tracer\_type}, 
		\hyperpage{3399}
  \item {mom\_open\_boundary::obc\_segment\_type}, \hyperpage{3399}
  \item {mom\_open\_boundary::obc\_struct\_type}, \hyperpage{3404}
  \item {mom\_open\_boundary::ocean\_obc\_type}, \hyperpage{3416}
  \item {mom\_open\_boundary::segment\_tracer\_registry\_type}, 
		\hyperpage{3562}
  \item {mom\_pointaccel}, \hyperpage{2081}
    \subitem {pointaccel\_init}, \hyperpage{2081}
    \subitem {write\_u\_accel}, \hyperpage{2082}
    \subitem {write\_v\_accel}, \hyperpage{2087}
  \item {mom\_pointaccel::pointaccel\_cs}, \hyperpage{3477}
  \item {mom\_pressureforce}, \hyperpage{2092}
    \subitem {pressureforce}, \hyperpage{2093}
    \subitem {pressureforce\_end}, \hyperpage{2094}
    \subitem {pressureforce\_init}, \hyperpage{2094}
  \item {mom\_pressureforce::pressureforce\_cs}, \hyperpage{3484}
  \item {mom\_pressureforce\_fv}, \hyperpage{2095}
    \subitem {pressureforce\_fv\_bouss}, \hyperpage{2096}
    \subitem {pressureforce\_fv\_end}, \hyperpage{2101}
    \subitem {pressureforce\_fv\_init}, \hyperpage{2102}
    \subitem {pressureforce\_fv\_nonbouss}, \hyperpage{2103}
  \item {mom\_pressureforce\_fv::pressureforce\_fv\_cs}, 
		\hyperpage{3486}
  \item {mom\_pressureforce\_mont}, \hyperpage{2108}
    \subitem {pressureforce\_mont\_bouss}, \hyperpage{2109}
    \subitem {pressureforce\_mont\_end}, \hyperpage{2112}
    \subitem {pressureforce\_mont\_init}, \hyperpage{2113}
    \subitem {pressureforce\_mont\_nonbouss}, \hyperpage{2114}
    \subitem {set\_pbce\_bouss}, \hyperpage{2118}
    \subitem {set\_pbce\_nonbouss}, \hyperpage{2120}
  \item {mom\_pressureforce\_mont::pressureforce\_mont\_cs}, 
		\hyperpage{3487}
  \item {mom\_random}, \hyperpage{2122}
    \subitem {random\_01}, \hyperpage{2123}
    \subitem {random\_0d\_constructor}, \hyperpage{2123}
    \subitem {random\_2d\_01}, \hyperpage{2124}
    \subitem {random\_2d\_constructor}, \hyperpage{2124}
    \subitem {random\_2d\_norm}, \hyperpage{2125}
    \subitem {random\_destruct}, \hyperpage{2126}
    \subitem {random\_norm}, \hyperpage{2126}
    \subitem {random\_unit\_tests}, \hyperpage{2126}
    \subitem {seed\_from\_index}, \hyperpage{2129}
    \subitem {seed\_from\_time}, \hyperpage{2130}
    \subitem {test\_fn}, \hyperpage{2130}
  \item {mom\_random::prng}, \hyperpage{3489}
  \item {mom\_read\_data\_1d}
    \subitem {mom\_io}, \hyperpage{1719}
    \subitem {mom\_io::mom\_read\_data}, \hyperpage{3382}
  \item {mom\_read\_data\_2d}
    \subitem {mom\_io}, \hyperpage{1719}
    \subitem {mom\_io::mom\_read\_data}, \hyperpage{3383}
  \item {mom\_read\_data\_3d}
    \subitem {mom\_io}, \hyperpage{1720}
    \subitem {mom\_io::mom\_read\_data}, \hyperpage{3384}
  \item {mom\_read\_data\_4d}
    \subitem {mom\_io}, \hyperpage{1721}
    \subitem {mom\_io::mom\_read\_data}, \hyperpage{3385}
  \item {mom\_read\_vector\_2d}
    \subitem {mom\_io}, \hyperpage{1721}
    \subitem {mom\_io::mom\_read\_vector}, \hyperpage{3386}
  \item {mom\_read\_vector\_3d}
    \subitem {mom\_io}, \hyperpage{1723}
    \subitem {mom\_io::mom\_read\_vector}, \hyperpage{3387}
  \item {mom\_regridding}, \hyperpage{2131}
    \subitem {adjust\_interface\_motion}, \hyperpage{2134}
    \subitem {build\_grid\_adaptive}, \hyperpage{2135}
    \subitem {build\_grid\_arbitrary}, \hyperpage{2136}
    \subitem {build\_grid\_hycom1}, \hyperpage{2137}
    \subitem {build\_grid\_slight}, \hyperpage{2139}
    \subitem {build\_rho\_grid}, \hyperpage{2140}
    \subitem {build\_sigma\_grid}, \hyperpage{2142}
    \subitem {build\_zstar\_grid}, \hyperpage{2144}
    \subitem {calc\_h\_new\_by\_dz}, \hyperpage{2145}
    \subitem {check\_grid\_column}, \hyperpage{2146}
    \subitem {check\_grid\_def}, \hyperpage{2147}
    \subitem {check\_remapping\_grid}, \hyperpage{2148}
    \subitem {convective\_adjustment}, \hyperpage{2149}
    \subitem {dz\_function1}, \hyperpage{2150}
    \subitem {end\_regridding}, \hyperpage{2150}
    \subitem {filtered\_grid\_motion}, \hyperpage{2151}
    \subitem {get\_regrid\_size}, \hyperpage{2153}
    \subitem {get\_rho\_cs}, \hyperpage{2153}
    \subitem {get\_sigma\_cs}, \hyperpage{2154}
    \subitem {get\_zlike\_cs}, \hyperpage{2154}
    \subitem {getcoordinateinterfaces}, \hyperpage{2154}
    \subitem {getcoordinateresolution}, \hyperpage{2155}
    \subitem {getcoordinateshortname}, \hyperpage{2155}
    \subitem {getcoordinateunits}, \hyperpage{2156}
    \subitem {getstaticthickness}, \hyperpage{2156}
    \subitem {inflate\_vanished\_layers\_old}, \hyperpage{2157}
    \subitem {initcoord}, \hyperpage{2158}
    \subitem {initialize\_regridding}, \hyperpage{2159}
    \subitem {regridding\_main}, \hyperpage{2166}
    \subitem {rho\_function1}, \hyperpage{2168}
    \subitem {set\_regrid\_max\_depths}, \hyperpage{2169}
    \subitem {set\_regrid\_max\_thickness}, \hyperpage{2169}
    \subitem {set\_regrid\_params}, \hyperpage{2170}
    \subitem {set\_target\_densities}, \hyperpage{2173}
    \subitem {set\_target\_densities\_from\_gv}, \hyperpage{2173}
    \subitem {setcoordinateresolution}, \hyperpage{2174}
    \subitem {uniformresolution}, \hyperpage{2174}
  \item {mom\_regridding::regridding\_cs}, \hyperpage{3528}
  \item {mom\_regularize\_layers}, \hyperpage{2175}
    \subitem {find\_deficit\_ratios}, \hyperpage{2176}
    \subitem {id\_clock\_eos}, \hyperpage{2188}
    \subitem {id\_clock\_pass}, \hyperpage{2188}
    \subitem {regularize\_layers}, \hyperpage{2178}
    \subitem {regularize\_layers\_init}, \hyperpage{2179}
    \subitem {regularize\_surface}, \hyperpage{2181}
  \item {mom\_regularize\_layers::regularize\_layers\_cs}, 
		\hyperpage{3531}
  \item {mom\_remapping}, \hyperpage{2188}
    \subitem {average\_value\_ppoly}, \hyperpage{2190}
    \subitem {build\_reconstructions\_1d}, \hyperpage{2192}
    \subitem {buildgridfromh}, \hyperpage{2194}
    \subitem {check\_reconstructions\_1d}, \hyperpage{2194}
    \subitem {dumpgrid}, \hyperpage{2196}
    \subitem {dzfromh1h2}, \hyperpage{2196}
    \subitem {end\_remapping}, \hyperpage{2197}
    \subitem {extract\_member\_remapping\_cs}, \hyperpage{2197}
    \subitem {initialize\_remapping}, \hyperpage{2198}
    \subitem {integraterecononinterval}, \hyperpage{2198}
    \subitem {ispossumerrsignificant}, \hyperpage{2203}
    \subitem {measure\_input\_bounds}, \hyperpage{2204}
    \subitem {measure\_output\_bounds}, \hyperpage{2205}
    \subitem {remap\_via\_sub\_cells}, \hyperpage{2205}
    \subitem {remapbydeltaz}, \hyperpage{2211}
    \subitem {remapbyprojection}, \hyperpage{2213}
    \subitem {remapping\_core\_h}, \hyperpage{2214}
    \subitem {remapping\_core\_w}, \hyperpage{2216}
    \subitem {remapping\_set\_param}, \hyperpage{2217}
    \subitem {remapping\_unit\_tests}, \hyperpage{2218}
    \subitem {setreconstructiontype}, \hyperpage{2222}
    \subitem {test\_answer}, \hyperpage{2222}
  \item {mom\_remapping::remapping\_cs}, \hyperpage{3532}
  \item {mom\_restart}, \hyperpage{2223}
    \subitem {determine\_is\_new\_run}, \hyperpage{2225}
    \subitem {get\_checksum\_loop\_ranges}, \hyperpage{2227}
    \subitem {is\_new\_run}, \hyperpage{2228}
    \subitem {open\_restart\_units}, \hyperpage{2228}
    \subitem {query\_initialized\_0d}, \hyperpage{2231}
    \subitem {query\_initialized\_0d\_name}, \hyperpage{2231}
    \subitem {query\_initialized\_1d}, \hyperpage{2232}
    \subitem {query\_initialized\_1d\_name}, \hyperpage{2232}
    \subitem {query\_initialized\_2d}, \hyperpage{2233}
    \subitem {query\_initialized\_2d\_name}, \hyperpage{2234}
    \subitem {query\_initialized\_3d}, \hyperpage{2234}
    \subitem {query\_initialized\_3d\_name}, \hyperpage{2235}
    \subitem {query\_initialized\_4d}, \hyperpage{2236}
    \subitem {query\_initialized\_4d\_name}, \hyperpage{2236}
    \subitem {query\_initialized\_name}, \hyperpage{2237}
    \subitem {register\_restart\_field\_0d}, \hyperpage{2238}
    \subitem {register\_restart\_field\_1d}, \hyperpage{2238}
    \subitem {register\_restart\_field\_2d}, \hyperpage{2239}
    \subitem {register\_restart\_field\_3d}, \hyperpage{2240}
    \subitem {register\_restart\_field\_4d}, \hyperpage{2241}
    \subitem {register\_restart\_field\_as\_obsolete}, \hyperpage{2242}
    \subitem {register\_restart\_field\_ptr0d}, \hyperpage{2242}
    \subitem {register\_restart\_field\_ptr1d}, \hyperpage{2243}
    \subitem {register\_restart\_field\_ptr2d}, \hyperpage{2244}
    \subitem {register\_restart\_field\_ptr3d}, \hyperpage{2244}
    \subitem {register\_restart\_field\_ptr4d}, \hyperpage{2245}
    \subitem {register\_restart\_pair\_ptr2d}, \hyperpage{2246}
    \subitem {register\_restart\_pair\_ptr3d}, \hyperpage{2246}
    \subitem {register\_restart\_pair\_ptr4d}, \hyperpage{2247}
    \subitem {restart\_end}, \hyperpage{2248}
    \subitem {restart\_error}, \hyperpage{2248}
    \subitem {restart\_files\_exist}, \hyperpage{2248}
    \subitem {restart\_init}, \hyperpage{2249}
    \subitem {restart\_init\_end}, \hyperpage{2250}
    \subitem {restore\_state}, \hyperpage{2251}
    \subitem {save\_restart}, \hyperpage{2254}
  \item {mom\_restart::field\_restart}, \hyperpage{3207}
  \item {mom\_restart::mom\_restart\_cs}, \hyperpage{3388}
  \item {mom\_restart::obsolete\_restart}, \hyperpage{3404}
  \item {mom\_restart::p0d}, \hyperpage{3446}
  \item {mom\_restart::p1d}, \hyperpage{3447}
  \item {mom\_restart::p2d}, \hyperpage{3448}
  \item {mom\_restart::p3d}, \hyperpage{3453}
  \item {mom\_restart::p4d}, \hyperpage{3455}
  \item {mom\_restart::query\_initialized}, \hyperpage{3498}
    \subitem {query\_initialized\_0d}, \hyperpage{3499}
    \subitem {query\_initialized\_0d\_name}, \hyperpage{3500}
    \subitem {query\_initialized\_1d}, \hyperpage{3500}
    \subitem {query\_initialized\_1d\_name}, \hyperpage{3501}
    \subitem {query\_initialized\_2d}, \hyperpage{3502}
    \subitem {query\_initialized\_2d\_name}, \hyperpage{3502}
    \subitem {query\_initialized\_3d}, \hyperpage{3503}
    \subitem {query\_initialized\_3d\_name}, \hyperpage{3503}
    \subitem {query\_initialized\_4d}, \hyperpage{3504}
    \subitem {query\_initialized\_4d\_name}, \hyperpage{3505}
    \subitem {query\_initialized\_name}, \hyperpage{3505}
  \item {mom\_restart::register\_restart\_field}, \hyperpage{3517}
    \subitem {register\_restart\_field\_0d}, \hyperpage{3517}
    \subitem {register\_restart\_field\_1d}, \hyperpage{3519}
    \subitem {register\_restart\_field\_2d}, \hyperpage{3520}
    \subitem {register\_restart\_field\_3d}, \hyperpage{3521}
    \subitem {register\_restart\_field\_4d}, \hyperpage{3522}
    \subitem {register\_restart\_field\_ptr0d}, \hyperpage{3522}
    \subitem {register\_restart\_field\_ptr1d}, \hyperpage{3523}
    \subitem {register\_restart\_field\_ptr2d}, \hyperpage{3524}
    \subitem {register\_restart\_field\_ptr3d}, \hyperpage{3525}
    \subitem {register\_restart\_field\_ptr4d}, \hyperpage{3525}
  \item {mom\_restart::register\_restart\_pair}, \hyperpage{3526}
    \subitem {register\_restart\_pair\_ptr2d}, \hyperpage{3526}
    \subitem {register\_restart\_pair\_ptr3d}, \hyperpage{3527}
    \subitem {register\_restart\_pair\_ptr4d}, \hyperpage{3528}
  \item {mom\_safe\_alloc}, \hyperpage{2257}
    \subitem {safe\_alloc\_allocatable\_2d}, \hyperpage{2258}
    \subitem {safe\_alloc\_allocatable\_3d}, \hyperpage{2258}
    \subitem {safe\_alloc\_allocatable\_3d\_6arg}, \hyperpage{2259}
    \subitem {safe\_alloc\_ptr\_1d}, \hyperpage{2259}
    \subitem {safe\_alloc\_ptr\_2d}, \hyperpage{2260}
    \subitem {safe\_alloc\_ptr\_2d\_2arg}, \hyperpage{2260}
    \subitem {safe\_alloc\_ptr\_3d}, \hyperpage{2261}
    \subitem {safe\_alloc\_ptr\_3d\_3arg}, \hyperpage{2261}
    \subitem {safe\_alloc\_ptr\_3d\_6arg}, \hyperpage{2262}
  \item {mom\_safe\_alloc::safe\_alloc\_alloc}, \hyperpage{3554}
    \subitem {safe\_alloc\_allocatable\_2d}, \hyperpage{3555}
    \subitem {safe\_alloc\_allocatable\_3d}, \hyperpage{3555}
    \subitem {safe\_alloc\_allocatable\_3d\_6arg}, \hyperpage{3556}
  \item {mom\_safe\_alloc::safe\_alloc\_ptr}, \hyperpage{3557}
    \subitem {safe\_alloc\_ptr\_1d}, \hyperpage{3557}
    \subitem {safe\_alloc\_ptr\_2d}, \hyperpage{3558}
    \subitem {safe\_alloc\_ptr\_2d\_2arg}, \hyperpage{3558}
    \subitem {safe\_alloc\_ptr\_3d}, \hyperpage{3558}
    \subitem {safe\_alloc\_ptr\_3d\_3arg}, \hyperpage{3559}
    \subitem {safe\_alloc\_ptr\_3d\_6arg}, \hyperpage{3559}
  \item {mom\_set\_diffusivity}, \hyperpage{2263}
    \subitem {add\_drag\_diffusivity}, \hyperpage{2263}
    \subitem {add\_lotw\_bbl\_diffusivity}, \hyperpage{2267}
    \subitem {add\_mlrad\_diffusivity}, \hyperpage{2270}
    \subitem {double\_diffusion}, \hyperpage{2273}
    \subitem {find\_n2}, \hyperpage{2274}
    \subitem {find\_tke\_to\_kd}, \hyperpage{2277}
    \subitem {set\_bbl\_tke}, \hyperpage{2281}
    \subitem {set\_density\_ratios}, \hyperpage{2283}
    \subitem {set\_diffusivity}, \hyperpage{2285}
    \subitem {set\_diffusivity\_end}, \hyperpage{2293}
    \subitem {set\_diffusivity\_init}, \hyperpage{2293}
  \item {mom\_set\_diffusivity::diffusivity\_diags}, \hyperpage{3156}
  \item {mom\_set\_diffusivity::set\_diffusivity\_cs}, \hyperpage{3563}
  \item {mom\_set\_verbosity}
    \subitem {mom\_error\_handler}, \hyperpage{1345}
  \item {mom\_set\_visc}, \hyperpage{2298}
    \subitem {set\_u\_at\_v}, \hyperpage{2298}
    \subitem {set\_v\_at\_u}, \hyperpage{2299}
    \subitem {set\_visc\_end}, \hyperpage{2300}
    \subitem {set\_visc\_init}, \hyperpage{2301}
    \subitem {set\_visc\_register\_restarts}, \hyperpage{2306}
    \subitem {set\_viscous\_bbl}, \hyperpage{2307}
    \subitem {set\_viscous\_ml}, \hyperpage{2320}
  \item {mom\_set\_visc::set\_visc\_cs}, \hyperpage{3572}
  \item {mom\_shared\_init\_init}
    \subitem {mom\_shared\_initialization}, \hyperpage{2340}
  \item {mom\_shared\_initialization}, \hyperpage{2330}
    \subitem {apply\_topography\_edits\_from\_file}, \hyperpage{2331}
    \subitem {compute\_global\_grid\_integrals}, \hyperpage{2332}
    \subitem {diagnosemaximumdepth}, \hyperpage{2333}
    \subitem {initialize\_grid\_rotation\_angle}, \hyperpage{2333}
    \subitem {initialize\_topography\_from\_file}, \hyperpage{2334}
    \subitem {initialize\_topography\_named}, \hyperpage{2335}
    \subitem {limit\_topography}, \hyperpage{2337}
    \subitem {modulo\_around\_point}, \hyperpage{2338}
    \subitem {mom\_calculate\_grad\_coriolis}, \hyperpage{2338}
    \subitem {mom\_initialize\_rotation}, \hyperpage{2339}
    \subitem {mom\_shared\_init\_init}, \hyperpage{2340}
    \subitem {read\_face\_length\_list}, \hyperpage{2340}
    \subitem {reset\_face\_lengths\_file}, \hyperpage{2341}
    \subitem {reset\_face\_lengths\_list}, \hyperpage{2342}
    \subitem {reset\_face\_lengths\_named}, \hyperpage{2346}
    \subitem {set\_rotation\_beta\_plane}, \hyperpage{2347}
    \subitem {set\_rotation\_planetary}, \hyperpage{2348}
    \subitem {set\_velocity\_depth\_max}, \hyperpage{2349}
    \subitem {set\_velocity\_depth\_min}, \hyperpage{2349}
    \subitem {write\_ocean\_geometry\_file}, \hyperpage{2350}
  \item {mom\_spatial\_means}, \hyperpage{2352}
    \subitem {adjust\_area\_mean\_to\_zero}, \hyperpage{2353}
    \subitem {global\_area\_integral}, \hyperpage{2354}
    \subitem {global\_area\_mean}, \hyperpage{2355}
    \subitem {global\_i\_mean}, \hyperpage{2355}
    \subitem {global\_j\_mean}, \hyperpage{2357}
    \subitem {global\_layer\_mean}, \hyperpage{2358}
    \subitem {global\_mass\_integral}, \hyperpage{2359}
    \subitem {global\_volume\_mean}, \hyperpage{2360}
  \item {mom\_sponge}, \hyperpage{2361}
    \subitem {apply\_sponge}, \hyperpage{2362}
    \subitem {init\_sponge\_diags}, \hyperpage{2366}
    \subitem {initialize\_sponge}, \hyperpage{2366}
    \subitem {set\_up\_sponge\_field}, \hyperpage{2368}
    \subitem {set\_up\_sponge\_ml\_density}, \hyperpage{2369}
    \subitem {sponge\_end}, \hyperpage{2370}
  \item {mom\_sponge::p2d}, \hyperpage{3450}
  \item {mom\_sponge::p3d}, \hyperpage{3452}
  \item {mom\_sponge::sponge\_cs}, \hyperpage{3579}
  \item {mom\_state\_chksum\_3arg}
    \subitem {mom\_checksum\_packages}, \hyperpage{594}
    \subitem {mom\_checksum\_packages::mom\_state\_chksum}, 
		\hyperpage{3390}
  \item {mom\_state\_chksum\_5arg}
    \subitem {mom\_checksum\_packages}, \hyperpage{595}
    \subitem {mom\_checksum\_packages::mom\_state\_chksum}, 
		\hyperpage{3391}
  \item {mom\_state\_init\_tests}
    \subitem {mom\_state\_initialization}, \hyperpage{2404}
  \item {mom\_state\_initialization}, \hyperpage{2371}
    \subitem {adjustetatofitbathymetry}, \hyperpage{2372}
    \subitem {compute\_global\_grid\_integrals}, \hyperpage{2374}
    \subitem {convert\_thickness}, \hyperpage{2374}
    \subitem {cut\_off\_column\_top}, \hyperpage{2376}
    \subitem {depress\_surface}, \hyperpage{2378}
    \subitem {find\_interfaces}, \hyperpage{2379}
    \subitem {initialize\_sponges\_file}, \hyperpage{2381}
    \subitem {initialize\_temp\_salt\_fit}, \hyperpage{2384}
    \subitem {initialize\_temp\_salt\_from\_file}, \hyperpage{2386}
    \subitem {initialize\_temp\_salt\_from\_profile}, \hyperpage{2387}
    \subitem {initialize\_temp\_salt\_linear}, \hyperpage{2388}
    \subitem {initialize\_thickness\_from\_file}, \hyperpage{2389}
    \subitem {initialize\_thickness\_list}, \hyperpage{2391}
    \subitem {initialize\_thickness\_uniform}, \hyperpage{2392}
    \subitem {initialize\_velocity\_circular}, \hyperpage{2393}
    \subitem {initialize\_velocity\_from\_file}, \hyperpage{2394}
    \subitem {initialize\_velocity\_uniform}, \hyperpage{2395}
    \subitem {initialize\_velocity\_zero}, \hyperpage{2396}
    \subitem {mom\_initialize\_state}, \hyperpage{2397}
    \subitem {mom\_state\_init\_tests}, \hyperpage{2404}
    \subitem {mom\_temp\_salt\_initialize\_from\_z}, \hyperpage{2405}
    \subitem {set\_velocity\_depth\_max}, \hyperpage{2412}
    \subitem {set\_velocity\_depth\_min}, \hyperpage{2412}
    \subitem {trim\_for\_ice}, \hyperpage{2412}
  \item {mom\_state\_is\_synchronized}
    \subitem {mom}, \hyperpage{375}
  \item {mom\_state\_stats}
    \subitem {mom\_checksum\_packages}, \hyperpage{596}
  \item {mom\_string\_functions}, \hyperpage{2414}
    \subitem {extract\_integer}, \hyperpage{2415}
    \subitem {extract\_real}, \hyperpage{2416}
    \subitem {extract\_word}, \hyperpage{2416}
    \subitem {extractword}, \hyperpage{2417}
    \subitem {isformattedfloatequalto}, \hyperpage{2417}
    \subitem {left\_int}, \hyperpage{2418}
    \subitem {left\_ints}, \hyperpage{2418}
    \subitem {left\_real}, \hyperpage{2419}
    \subitem {left\_reals}, \hyperpage{2419}
    \subitem {localtesti}, \hyperpage{2420}
    \subitem {localtestr}, \hyperpage{2421}
    \subitem {localtests}, \hyperpage{2421}
    \subitem {lowercase}, \hyperpage{2422}
    \subitem {remove\_spaces}, \hyperpage{2422}
    \subitem {slasher}, \hyperpage{2423}
    \subitem {string\_functions\_unit\_tests}, \hyperpage{2423}
    \subitem {uppercase}, \hyperpage{2424}
  \item {mom\_sum\_output}, \hyperpage{2424}
    \subitem {accumulate\_net\_input}, \hyperpage{2425}
    \subitem {create\_depth\_list}, \hyperpage{2427}
    \subitem {depth\_list\_setup}, \hyperpage{2429}
    \subitem {get\_depth\_list\_checksums}, \hyperpage{2430}
    \subitem {mom\_sum\_output\_end}, \hyperpage{2431}
    \subitem {mom\_sum\_output\_init}, \hyperpage{2431}
    \subitem {read\_depth\_list}, \hyperpage{2433}
    \subitem {write\_depth\_list}, \hyperpage{2435}
    \subitem {write\_energy}, \hyperpage{2437}
  \item {mom\_sum\_output::depth\_list}, \hyperpage{3125}
  \item {mom\_sum\_output::sum\_output\_cs}, \hyperpage{3584}
  \item {mom\_sum\_output\_end}
    \subitem {mom\_sum\_output}, \hyperpage{2431}
  \item {mom\_sum\_output\_init}
    \subitem {mom\_sum\_output}, \hyperpage{2431}
  \item {mom\_surface\_chksum}
    \subitem {mom\_checksum\_packages}, \hyperpage{598}
  \item {mom\_surface\_forcing}, \hyperpage{2446}
    \subitem {buoyancy\_forcing\_const}, \hyperpage{2447}
    \subitem {buoyancy\_forcing\_from\_data\_override}, 
		\hyperpage{2448}
    \subitem {buoyancy\_forcing\_from\_files}, \hyperpage{2451}
    \subitem {buoyancy\_forcing\_linear}, \hyperpage{2454}
    \subitem {buoyancy\_forcing\_zero}, \hyperpage{2456}
    \subitem {forcing\_save\_restart}, \hyperpage{2457}
    \subitem {neverworld\_wind\_forcing}, \hyperpage{2457}
    \subitem {scurve}, \hyperpage{2459}
    \subitem {scurve\_wind\_forcing}, \hyperpage{2459}
    \subitem {set\_forcing}, \hyperpage{2460}
    \subitem {surface\_forcing\_end}, \hyperpage{2462}
    \subitem {surface\_forcing\_init}, \hyperpage{2463}
    \subitem {wind\_forcing\_1gyre}, \hyperpage{2469}
    \subitem {wind\_forcing\_2gyre}, \hyperpage{2469}
    \subitem {wind\_forcing\_by\_data\_override}, \hyperpage{2470}
    \subitem {wind\_forcing\_const}, \hyperpage{2471}
    \subitem {wind\_forcing\_from\_file}, \hyperpage{2472}
    \subitem {wind\_forcing\_gyres}, \hyperpage{2475}
  \item {mom\_surface\_forcing::surface\_forcing\_cs}, \hyperpage{3589}
  \item {mom\_surface\_forcing\_gfdl::ice\_ocean\_boundary\_type}, 
		\hyperpage{3282}
  \item {mom\_surface\_forcing\_gfdl::surface\_forcing\_cs}, 
		\hyperpage{3595}
  \item {mom\_temp\_salt\_initialize\_from\_z}
    \subitem {mom\_state\_initialization}, \hyperpage{2405}
  \item {mom\_tfreeze}, \hyperpage{2476}
    \subitem {calculate\_tfreeze\_linear\_array}, \hyperpage{2477}
    \subitem {calculate\_tfreeze\_linear\_scalar}, \hyperpage{2477}
    \subitem {calculate\_tfreeze\_millero\_array}, \hyperpage{2478}
    \subitem {calculate\_tfreeze\_millero\_scalar}, \hyperpage{2479}
    \subitem {calculate\_tfreeze\_teos10\_array}, \hyperpage{2479}
    \subitem {calculate\_tfreeze\_teos10\_scalar}, \hyperpage{2480}
  \item {mom\_tfreeze::calculate\_tfreeze\_linear}, \hyperpage{3073}
    \subitem {calculate\_tfreeze\_linear\_array}, \hyperpage{3073}
    \subitem {calculate\_tfreeze\_linear\_scalar}, \hyperpage{3074}
  \item {mom\_tfreeze::calculate\_tfreeze\_millero}, \hyperpage{3075}
    \subitem {calculate\_tfreeze\_millero\_array}, \hyperpage{3075}
    \subitem {calculate\_tfreeze\_millero\_scalar}, \hyperpage{3076}
  \item {mom\_tfreeze::calculate\_tfreeze\_teos10}, \hyperpage{3077}
    \subitem {calculate\_tfreeze\_teos10\_array}, \hyperpage{3077}
    \subitem {calculate\_tfreeze\_teos10\_scalar}, \hyperpage{3078}
  \item {mom\_thermo\_chksum}
    \subitem {mom\_checksum\_packages}, \hyperpage{599}
  \item {mom\_thermovar\_chksum}
    \subitem {mom\_variables}, \hyperpage{2651}
  \item {mom\_thickness\_diffuse}, \hyperpage{2480}
    \subitem {add\_detangling\_kh}, \hyperpage{2482}
    \subitem {streamfn\_solver}, \hyperpage{2488}
    \subitem {thickness\_diffuse}, \hyperpage{2489}
    \subitem {thickness\_diffuse\_end}, \hyperpage{2495}
    \subitem {thickness\_diffuse\_full}, \hyperpage{2496}
    \subitem {thickness\_diffuse\_get\_kh}, \hyperpage{2508}
    \subitem {thickness\_diffuse\_init}, \hyperpage{2508}
  \item {mom\_thickness\_diffuse::thickness\_diffuse\_cs}, 
		\hyperpage{3601}
  \item {mom\_tidal\_forcing}, \hyperpage{2511}
    \subitem {calc\_tidal\_forcing}, \hyperpage{2512}
    \subitem {find\_in\_files}, \hyperpage{2514}
    \subitem {tidal\_forcing\_end}, \hyperpage{2515}
    \subitem {tidal\_forcing\_init}, \hyperpage{2515}
    \subitem {tidal\_forcing\_sensitivity}, \hyperpage{2519}
  \item {mom\_tidal\_forcing::astro\_longitudes}, \hyperpage{2975}
  \item {mom\_tidal\_forcing::tidal\_forcing\_cs}, \hyperpage{3605}
  \item {mom\_tidal\_mixing}, \hyperpage{2520}
    \subitem {add\_int\_tide\_diffusivity}, \hyperpage{2521}
    \subitem {calculate\_cvmix\_tidal}, \hyperpage{2527}
    \subitem {calculate\_tidal\_mixing}, \hyperpage{2531}
    \subitem {post\_tidal\_diagnostics}, \hyperpage{2532}
    \subitem {read\_tidal\_constituents}, \hyperpage{2533}
    \subitem {read\_tidal\_energy}, \hyperpage{2535}
    \subitem {setup\_tidal\_diagnostics}, \hyperpage{2536}
    \subitem {tidal\_mixing\_end}, \hyperpage{2537}
    \subitem {tidal\_mixing\_h\_amp}, \hyperpage{2537}
    \subitem {tidal\_mixing\_init}, \hyperpage{2538}
  \item {mom\_tidal\_mixing::tidal\_mixing\_cs}, \hyperpage{3607}
  \item {mom\_tidal\_mixing::tidal\_mixing\_diags}, \hyperpage{3611}
  \item {mom\_time\_manager}, \hyperpage{2544}
    \subitem {real\_to\_time}, \hyperpage{2544}
  \item {mom\_timing\_init}
    \subitem {mom}, \hyperpage{376}
  \item {mom\_tracer\_advect}, \hyperpage{2545}
    \subitem {advect\_tracer}, \hyperpage{2546}
    \subitem {advect\_x}, \hyperpage{2550}
    \subitem {advect\_y}, \hyperpage{2555}
    \subitem {tracer\_advect\_end}, \hyperpage{2561}
    \subitem {tracer\_advect\_init}, \hyperpage{2561}
  \item {mom\_tracer\_advect::tracer\_advect\_cs}, \hyperpage{3613}
  \item {mom\_tracer\_chkinv}
    \subitem {mom\_tracer\_registry}, \hyperpage{2610}
  \item {mom\_tracer\_chksum}
    \subitem {mom\_tracer\_registry}, \hyperpage{2610}
  \item {mom\_tracer\_diabatic}, \hyperpage{2562}
    \subitem {applytracerboundaryfluxesinout}, \hyperpage{2563}
    \subitem {tracer\_vertdiff}, \hyperpage{2566}
  \item {MOM\_tracer\_flow\_control}, \hyperpage{2570}
  \item {mom\_tracer\_flow\_control}, \hyperpage{2570}
    \subitem {call\_tracer\_column\_fns}, \hyperpage{2571}
    \subitem {call\_tracer\_flux\_init}, \hyperpage{2574}
    \subitem {call\_tracer\_register}, \hyperpage{2574}
    \subitem {call\_tracer\_set\_forcing}, \hyperpage{2576}
    \subitem {call\_tracer\_stocks}, \hyperpage{2577}
    \subitem {call\_tracer\_surface\_state}, \hyperpage{2579}
    \subitem {get\_chl\_from\_model}, \hyperpage{2580}
    \subitem {store\_stocks}, \hyperpage{2581}
    \subitem {tracer\_flow\_control\_end}, \hyperpage{2582}
    \subitem {tracer\_flow\_control\_init}, \hyperpage{2582}
  \item {mom\_tracer\_flow\_control::tracer\_flow\_control\_cs}, 
		\hyperpage{3615}
  \item {mom\_tracer\_hor\_diff}, \hyperpage{2584}
    \subitem {tracer\_epipycnal\_ml\_diff}, \hyperpage{2585}
    \subitem {tracer\_hor\_diff\_end}, \hyperpage{2596}
    \subitem {tracer\_hor\_diff\_init}, \hyperpage{2596}
    \subitem {tracer\_hordiff}, \hyperpage{2598}
  \item {mom\_tracer\_hor\_diff::p2d}, \hyperpage{3450}
  \item {mom\_tracer\_hor\_diff::p2di}, \hyperpage{3451}
  \item {mom\_tracer\_hor\_diff::tracer\_hor\_diff\_cs}, 
		\hyperpage{3618}
  \item {mom\_tracer\_initialization\_from\_z}, \hyperpage{2605}
    \subitem {mom\_initialize\_tracer\_from\_z}, \hyperpage{2605}
  \item {mom\_tracer\_registry}, \hyperpage{2608}
    \subitem {lock\_tracer\_registry}, \hyperpage{2609}
    \subitem {mom\_tracer\_chkinv}, \hyperpage{2610}
    \subitem {mom\_tracer\_chksum}, \hyperpage{2610}
    \subitem {post\_tracer\_diagnostics\_at\_sync}, \hyperpage{2611}
    \subitem {post\_tracer\_transport\_diagnostics}, \hyperpage{2612}
    \subitem {postale\_tracer\_diagnostics}, \hyperpage{2613}
    \subitem {preale\_tracer\_diagnostics}, \hyperpage{2613}
    \subitem {register\_tracer}, \hyperpage{2614}
    \subitem {register\_tracer\_diagnostics}, \hyperpage{2618}
    \subitem {tracer\_name\_lookup}, \hyperpage{2623}
    \subitem {tracer\_registry\_end}, \hyperpage{2623}
    \subitem {tracer\_registry\_init}, \hyperpage{2623}
  \item {mom\_tracer\_registry::tracer\_registry\_type}, 
		\hyperpage{3621}
  \item {mom\_tracer\_registry::tracer\_type}, \hyperpage{3621}
  \item {mom\_tracer\_z\_init}, \hyperpage{2624}
    \subitem {determine\_temperature}, \hyperpage{2624}
    \subitem {find\_limited\_slope}, \hyperpage{2627}
    \subitem {find\_overlap}, \hyperpage{2627}
    \subitem {read\_z\_edges}, \hyperpage{2629}
    \subitem {tracer\_z\_init}, \hyperpage{2631}
    \subitem {tracer\_z\_init\_array}, \hyperpage{2634}
  \item {mom\_transcribe\_grid}, \hyperpage{2636}
    \subitem {copy\_dyngrid\_to\_mom\_grid}, \hyperpage{2637}
    \subitem {copy\_mom\_grid\_to\_dyngrid}, \hyperpage{2639}
    \subitem {rotate\_dyngrid}, \hyperpage{2641}
  \item {mom\_transform\_fms}, \hyperpage{2642}
    \subitem {rotated\_time\_interp\_external\_0d}, \hyperpage{2643}
  \item {mom\_transform\_fms::rotated\_mpp\_chksum}, \hyperpage{3552}
  \item {mom\_transform\_fms::rotated\_time\_interp\_external}, 
		\hyperpage{3553}
    \subitem {rotated\_time\_interp\_external\_0d}, \hyperpage{3553}
  \item {mom\_transform\_fms::rotated\_write\_field}, \hyperpage{3554}
  \item {mom\_unit\_scaling}, \hyperpage{2644}
    \subitem {fix\_restart\_unit\_scaling}, \hyperpage{2644}
    \subitem {unit\_scaling\_end}, \hyperpage{2644}
    \subitem {unit\_scaling\_init}, \hyperpage{2645}
  \item {mom\_unit\_scaling::unit\_scale\_type}, \hyperpage{3632}
  \item {mom\_unit\_tests}, \hyperpage{2646}
    \subitem {unit\_tests}, \hyperpage{2646}
  \item {mom\_variables}, \hyperpage{2647}
    \subitem {alloc\_bt\_cont\_type}, \hyperpage{2648}
    \subitem {allocate\_surface\_state}, \hyperpage{2649}
    \subitem {dealloc\_bt\_cont\_type}, \hyperpage{2650}
    \subitem {deallocate\_surface\_state}, \hyperpage{2651}
    \subitem {mom\_thermovar\_chksum}, \hyperpage{2651}
  \item {mom\_variables::accel\_diag\_ptrs}, \hyperpage{2955}
  \item {mom\_variables::bt\_cont\_type}, \hyperpage{3001}
  \item {mom\_variables::cont\_diag\_ptrs}, \hyperpage{3103}
  \item {mom\_variables::ocean\_internal\_state}, \hyperpage{3412}
  \item {mom\_variables::p2d}, \hyperpage{3449}
  \item {mom\_variables::p3d}, \hyperpage{3454}
  \item {mom\_variables::surface}, \hyperpage{3586}
  \item {mom\_variables::thermo\_var\_ptrs}, \hyperpage{3599}
  \item {mom\_variables::vertvisc\_type}, \hyperpage{3671}
  \item {mom\_verbose\_enough}
    \subitem {mom\_error\_handler}, \hyperpage{1345}
  \item {mom\_vert\_friction}, \hyperpage{2652}
    \subitem {find\_coupling\_coef}, \hyperpage{2653}
    \subitem {updatecfltruncationvalue}, \hyperpage{2657}
    \subitem {vertvisc}, \hyperpage{2658}
    \subitem {vertvisc\_coef}, \hyperpage{2663}
    \subitem {vertvisc\_end}, \hyperpage{2670}
    \subitem {vertvisc\_init}, \hyperpage{2670}
    \subitem {vertvisc\_limit\_vel}, \hyperpage{2674}
    \subitem {vertvisc\_remnant}, \hyperpage{2677}
  \item {mom\_vert\_friction::vertvisc\_cs}, \hyperpage{3667}
  \item {mom\_verticalgrid}, \hyperpage{2679}
    \subitem {fix\_restart\_scaling}, \hyperpage{2680}
    \subitem {get\_flux\_units}, \hyperpage{2680}
    \subitem {get\_thickness\_units}, \hyperpage{2681}
    \subitem {get\_tr\_flux\_units}, \hyperpage{2681}
    \subitem {setverticalgridaxes}, \hyperpage{2682}
    \subitem {verticalgridend}, \hyperpage{2683}
    \subitem {verticalgridinit}, \hyperpage{2683}
  \item {mom\_verticalgrid::verticalgrid\_type}, \hyperpage{3665}
  \item {mom\_wave\_interface}, \hyperpage{2685}
    \subitem {coriolisstokes}, \hyperpage{2687}
    \subitem {coupler}, \hyperpage{2707}
    \subitem {dataoverrideisinitialized}, \hyperpage{2707}
    \subitem {dataovr}, \hyperpage{2707}
    \subitem {datasource}, \hyperpage{2707}
    \subitem {dhh85}, \hyperpage{2707}
    \subitem {dhh85\_is\_set}, \hyperpage{2708}
    \subitem {dhh85\_mid}, \hyperpage{2688}
    \subitem {get\_langmuir\_number}, \hyperpage{2689}
    \subitem {get\_sl\_average\_band}, \hyperpage{2691}
    \subitem {get\_sl\_average\_prof}, \hyperpage{2691}
    \subitem {get\_stokessl\_lifoxkemper}, \hyperpage{2692}
    \subitem {input}, \hyperpage{2708}
    \subitem {la\_frachbl}, \hyperpage{2708}
    \subitem {la\_misalignment}, \hyperpage{2708}
    \subitem {lf17}, \hyperpage{2708}
    \subitem {mom\_wave\_interface\_init}, \hyperpage{2694}
    \subitem {mom\_wave\_interface\_init\_lite}, \hyperpage{2697}
    \subitem {null\_wavemethod}, \hyperpage{2708}
    \subitem {numbands}, \hyperpage{2709}
    \subitem {partitionmode}, \hyperpage{2709}
    \subitem {pi}, \hyperpage{2709}
    \subitem {staticwaves}, \hyperpage{2709}
    \subitem {stokesmixing}, \hyperpage{2698}
    \subitem {surface\_bands\_by\_data\_override}, \hyperpage{2699}
    \subitem {surfbandfilename}, \hyperpage{2709}
    \subitem {surfbands}, \hyperpage{2710}
    \subitem {testprof}, \hyperpage{2710}
    \subitem {tp\_stkx0}, \hyperpage{2710}
    \subitem {tp\_stky0}, \hyperpage{2710}
    \subitem {tp\_wvl}, \hyperpage{2710}
    \subitem {update\_stokes\_drift}, \hyperpage{2701}
    \subitem {update\_surface\_waves}, \hyperpage{2705}
    \subitem {ust\_2\_u10\_coare3p5}, \hyperpage{2705}
    \subitem {waveage}, \hyperpage{2710}
    \subitem {waveagepeakfreq}, \hyperpage{2711}
    \subitem {wavemethod}, \hyperpage{2711}
    \subitem {waves\_end}, \hyperpage{2706}
    \subitem {wavewind}, \hyperpage{2711}
  \item {mom\_wave\_interface::wave\_parameters\_cs}, \hyperpage{3673}
  \item {mom\_wave\_interface\_init}
    \subitem {mom\_wave\_interface}, \hyperpage{2694}
  \item {mom\_wave\_interface\_init\_lite}
    \subitem {mom\_wave\_interface}, \hyperpage{2697}
  \item {mom\_wave\_speed}, \hyperpage{2711}
    \subitem {tdma6}, \hyperpage{2712}
    \subitem {tridiag\_det}, \hyperpage{2713}
    \subitem {wave\_speed}, \hyperpage{2714}
    \subitem {wave\_speed\_init}, \hyperpage{2721}
    \subitem {wave\_speed\_set\_param}, \hyperpage{2723}
    \subitem {wave\_speeds}, \hyperpage{2724}
  \item {mom\_wave\_speed::wave\_speed\_cs}, \hyperpage{3675}
  \item {mom\_wave\_structure}, \hyperpage{2731}
    \subitem {tridiag\_solver}, \hyperpage{2731}
    \subitem {wave\_structure}, \hyperpage{2733}
    \subitem {wave\_structure\_init}, \hyperpage{2740}
  \item {mom\_wave\_structure::wave\_structure\_cs}, \hyperpage{3677}
  \item {mom\_write\_cputime}, \hyperpage{2741}
    \subitem {mom\_write\_cputime\_end}, \hyperpage{2741}
    \subitem {mom\_write\_cputime\_init}, \hyperpage{2742}
    \subitem {write\_cputime}, \hyperpage{2743}
    \subitem {write\_cputime\_start\_clock}, \hyperpage{2744}
  \item {mom\_write\_cputime::write\_cputime\_cs}, \hyperpage{3679}
  \item {mom\_write\_cputime\_end}
    \subitem {mom\_write\_cputime}, \hyperpage{2741}
  \item {mom\_write\_cputime\_init}
    \subitem {mom\_write\_cputime}, \hyperpage{2742}
  \item {monotonize\_cubic}
    \subitem {p3m\_functions}, \hyperpage{2787}
  \item {mstar\_langmuir}
    \subitem {mom\_energetic\_pbl}, \hyperpage{1213}
  \item {myalloc}
    \subitem {mom\_forcing\_type}, \hyperpage{1437}
  \item {mystats}
    \subitem {mom\_horizontal\_regridding}, \hyperpage{1566}

  \indexspace

  \item {ndiff\_unit\_tests\_continuous}
    \subitem {mom\_neutral\_diffusion}, \hyperpage{1878}
  \item {ndiff\_unit\_tests\_discontinuous}
    \subitem {mom\_neutral\_diffusion}, \hyperpage{1882}
  \item {near\_boundary\_unit\_tests}
    \subitem {mom\_lateral\_boundary\_diffusion}, \hyperpage{1784}
  \item {neutral\_diffusion}
    \subitem {mom\_neutral\_diffusion}, \hyperpage{1885}
  \item {neutral\_diffusion\_calc\_coeffs}
    \subitem {mom\_neutral\_diffusion}, \hyperpage{1888}
  \item {neutral\_diffusion\_end}
    \subitem {mom\_neutral\_diffusion}, \hyperpage{1892}
  \item {neutral\_diffusion\_init}
    \subitem {mom\_neutral\_diffusion}, \hyperpage{1892}
  \item {neutral\_diffusion\_unit\_tests}
    \subitem {mom\_neutral\_diffusion}, \hyperpage{1895}
  \item {neutral\_surface\_flux}
    \subitem {mom\_neutral\_diffusion}, \hyperpage{1895}
  \item {neutral\_surface\_t\_eval}
    \subitem {mom\_neutral\_diffusion}, \hyperpage{1897}
  \item {neverworld\_initialization}, \hyperpage{2745}
    \subitem {circ\_ridge}, \hyperpage{2745}
    \subitem {cone}, \hyperpage{2746}
    \subitem {cosbell}, \hyperpage{2746}
    \subitem {cstprof}, \hyperpage{2747}
    \subitem {dist\_line\_fixed\_x}, \hyperpage{2747}
    \subitem {dist\_line\_fixed\_y}, \hyperpage{2748}
    \subitem {ew\_coast}, \hyperpage{2748}
    \subitem {neverworld\_initialize\_thickness}, \hyperpage{2749}
    \subitem {neverworld\_initialize\_topography}, \hyperpage{2750}
    \subitem {ns\_coast}, \hyperpage{2751}
    \subitem {ns\_ridge}, \hyperpage{2752}
    \subitem {scurve}, \hyperpage{2753}
    \subitem {spike}, \hyperpage{2753}
  \item {neverworld\_initialize\_thickness}
    \subitem {neverworld\_initialization}, \hyperpage{2749}
  \item {neverworld\_initialize\_topography}
    \subitem {neverworld\_initialization}, \hyperpage{2750}
  \item {neverworld\_wind\_forcing}
    \subitem {mom\_surface\_forcing}, \hyperpage{2457}
  \item {NIMEM\_}
    \subitem {MOM\_memory\_macros.h}, \hyperpage{3686}
  \item {NIMEMB\_}
    \subitem {MOM\_memory\_macros.h}, \hyperpage{3686}
  \item {NIMEMB\_PTR\_}
    \subitem {MOM\_memory\_macros.h}, \hyperpage{3686}
  \item {NIMEMB\_SYM\_}
    \subitem {MOM\_memory\_macros.h}, \hyperpage{3686}
  \item {NJMEM\_}
    \subitem {MOM\_memory\_macros.h}, \hyperpage{3686}
  \item {NJMEMB\_}
    \subitem {MOM\_memory\_macros.h}, \hyperpage{3687}
  \item {NJMEMB\_PTR\_}
    \subitem {MOM\_memory\_macros.h}, \hyperpage{3687}
  \item {NJMEMB\_SYM\_}
    \subitem {MOM\_memory\_macros.h}, \hyperpage{3687}
  \item {NK\_INTERFACE\_}
    \subitem {MOM\_memory\_macros.h}, \hyperpage{3687}
  \item {NKMEM0\_}
    \subitem {MOM\_memory\_macros.h}, \hyperpage{3687}
  \item {NKMEM\_}
    \subitem {MOM\_memory\_macros.h}, \hyperpage{3687}
  \item {none\_string}
    \subitem {mom\_energetic\_pbl}, \hyperpage{1215}
  \item {ns\_coast}
    \subitem {basin\_builder}, \hyperpage{170}
    \subitem {neverworld\_initialization}, \hyperpage{2751}
  \item {ns\_conic\_ridge}
    \subitem {basin\_builder}, \hyperpage{171}
  \item {ns\_ridge}
    \subitem {neverworld\_initialization}, \hyperpage{2752}
  \item {ns\_scurve\_ridge}
    \subitem {basin\_builder}, \hyperpage{171}
  \item {ntr}
    \subitem {dyed\_channel\_initialization}, \hyperpage{270}
    \subitem {dyed\_obcs\_initialization}, \hyperpage{277}
  \item {null\_wavemethod}
    \subitem {mom\_wave\_interface}, \hyperpage{2708}
  \item {num\_timelevels}
    \subitem {mom\_io}, \hyperpage{1724}
  \item {numbands}
    \subitem {mom\_wave\_interface}, \hyperpage{2709}

  \indexspace

  \item {obc\_register\_end}
    \subitem {mom\_boundary\_update}, \hyperpage{534}
  \item {obc\_registry\_init}
    \subitem {mom\_open\_boundary}, \hyperpage{2018}
  \item {obsolete\_char}
    \subitem {mom\_obsolete\_params}, \hyperpage{1914}
  \item {obsolete\_int}
    \subitem {mom\_obsolete\_params}, \hyperpage{1915}
  \item {obsolete\_logical}
    \subitem {mom\_obsolete\_params}, \hyperpage{1916}
  \item {obsolete\_real}
    \subitem {mom\_obsolete\_params}, \hyperpage{1916}
  \item {ocean\_da\_core\_init}
    \subitem {ocean\_da\_core\_mod}, \hyperpage{2754}
  \item {ocean\_da\_core\_mod}, \hyperpage{2753}
    \subitem {get\_profiles}, \hyperpage{2754}
    \subitem {ocean\_da\_core\_init}, \hyperpage{2754}
  \item {ocean\_da\_types\_mod}, \hyperpage{2755}
  \item {ocean\_da\_types\_mod::forward\_operator\_type}, 
		\hyperpage{3228}
  \item {ocean\_da\_types\_mod::grid\_type}, \hyperpage{3254}
  \item {ocean\_da\_types\_mod::ocean\_control\_struct}, 
		\hyperpage{3405}
  \item {ocean\_da\_types\_mod::ocean\_profile\_type}, \hyperpage{3420}
  \item {ocean\_model\_data1d\_get}
    \subitem {ocean\_model\_mod}, \hyperpage{2759}
    \subitem {ocean\_model\_mod::ocean\_model\_data\_get}, 
		\hyperpage{3415}
  \item {ocean\_model\_data2d\_get}
    \subitem {ocean\_model\_mod}, \hyperpage{2760}
    \subitem {ocean\_model\_mod::ocean\_model\_data\_get}, 
		\hyperpage{3415}
  \item {ocean\_model\_end}
    \subitem {ocean\_model\_mod}, \hyperpage{2761}
  \item {ocean\_model\_flux\_init}
    \subitem {ocean\_model\_mod}, \hyperpage{2762}
  \item {ocean\_model\_get\_uv\_surf}
    \subitem {ocean\_model\_mod}, \hyperpage{2762}
  \item {ocean\_model\_init}
    \subitem {ocean\_model\_mod}, \hyperpage{2763}
  \item {ocean\_model\_init\_sfc}
    \subitem {ocean\_model\_mod}, \hyperpage{2766}
  \item {ocean\_model\_mod}, \hyperpage{2755}
    \subitem {convert\_state\_to\_ocean\_type}, \hyperpage{2756}
    \subitem {get\_ocean\_grid}, \hyperpage{2758}
    \subitem {initialize\_ocean\_public\_type}, \hyperpage{2758}
    \subitem {ocean\_model\_data1d\_get}, \hyperpage{2759}
    \subitem {ocean\_model\_data2d\_get}, \hyperpage{2760}
    \subitem {ocean\_model\_end}, \hyperpage{2761}
    \subitem {ocean\_model\_flux\_init}, \hyperpage{2762}
    \subitem {ocean\_model\_get\_uv\_surf}, \hyperpage{2762}
    \subitem {ocean\_model\_init}, \hyperpage{2763}
    \subitem {ocean\_model\_init\_sfc}, \hyperpage{2766}
    \subitem {ocean\_model\_restart}, \hyperpage{2767}
    \subitem {ocean\_model\_save\_restart}, \hyperpage{2767}
    \subitem {ocean\_public\_type\_chksum}, \hyperpage{2768}
    \subitem {ocean\_stock\_pe}, \hyperpage{2769}
    \subitem {update\_ocean\_model}, \hyperpage{2769}
  \item {ocean\_model\_mod::ocean\_model\_data\_get}, \hyperpage{3414}
    \subitem {ocean\_model\_data1d\_get}, \hyperpage{3415}
    \subitem {ocean\_model\_data2d\_get}, \hyperpage{3415}
  \item {ocean\_model\_mod::ocean\_public\_type}, \hyperpage{3423}
  \item {ocean\_model\_mod::ocean\_state\_type}, \hyperpage{3424}
  \item {ocean\_model\_restart}
    \subitem {ocean\_model\_mod}, \hyperpage{2767}
  \item {ocean\_model\_save\_restart}
    \subitem {ocean\_model\_mod}, \hyperpage{2767}
  \item {ocean\_public\_type\_chksum}
    \subitem {ocean\_model\_mod}, \hyperpage{2768}
  \item {ocean\_register\_diag}
    \subitem {mom\_diag\_mediator}, \hyperpage{957}
  \item {ocean\_stock\_pe}
    \subitem {ocean\_model\_mod}, \hyperpage{2769}
  \item {ocmip2\_cfc\_column\_physics}
    \subitem {mom\_ocmip2\_cfc}, \hyperpage{1921}
  \item {ocmip2\_cfc\_end}
    \subitem {mom\_ocmip2\_cfc}, \hyperpage{1923}
  \item {ocmip2\_cfc\_stock}
    \subitem {mom\_ocmip2\_cfc}, \hyperpage{1923}
  \item {ocmip2\_cfc\_surface\_state}
    \subitem {mom\_ocmip2\_cfc}, \hyperpage{1924}
  \item {oda}
    \subitem {mom\_oda\_driver\_mod}, \hyperpage{1934}
  \item {oda\_end}
    \subitem {mom\_oda\_driver\_mod}, \hyperpage{1935}
  \item {offline\_add\_diurnal\_sw}
    \subitem {mom\_offline\_aux}, \hyperpage{1945}
  \item {offline\_advection\_ale}
    \subitem {mom\_offline\_main}, \hyperpage{1957}
  \item {offline\_advection\_layer}
    \subitem {mom\_offline\_main}, \hyperpage{1960}
  \item {offline\_diabatic\_ale}
    \subitem {mom\_offline\_main}, \hyperpage{1963}
  \item {offline\_fw\_fluxes\_into\_ocean}
    \subitem {mom\_offline\_main}, \hyperpage{1965}
  \item {offline\_fw\_fluxes\_out\_ocean}
    \subitem {mom\_offline\_main}, \hyperpage{1966}
  \item {offline\_redistribute\_residual}
    \subitem {mom\_offline\_main}, \hyperpage{1967}
  \item {offline\_transport\_end}
    \subitem {mom\_offline\_main}, \hyperpage{1970}
  \item {offline\_transport\_init}
    \subitem {mom\_offline\_main}, \hyperpage{1970}
  \item {oil\_stock}
    \subitem {oil\_tracer}, \hyperpage{2776}
  \item {oil\_tracer}, \hyperpage{2773}
    \subitem {initialize\_oil\_tracer}, \hyperpage{2774}
    \subitem {oil\_stock}, \hyperpage{2776}
    \subitem {oil\_tracer\_column\_physics}, \hyperpage{2777}
    \subitem {oil\_tracer\_end}, \hyperpage{2779}
    \subitem {oil\_tracer\_surface\_state}, \hyperpage{2780}
    \subitem {register\_oil\_tracer}, \hyperpage{2780}
  \item {oil\_tracer::oil\_tracer\_cs}, \hyperpage{3439}
  \item {oil\_tracer\_column\_physics}
    \subitem {oil\_tracer}, \hyperpage{2777}
  \item {oil\_tracer\_end}
    \subitem {oil\_tracer}, \hyperpage{2779}
  \item {oil\_tracer\_surface\_state}
    \subitem {oil\_tracer}, \hyperpage{2780}
  \item {old\_inflate\_layers\_1d}
    \subitem {coord\_rho}, \hyperpage{210}
  \item {om4\_string}
    \subitem {mom\_energetic\_pbl}, \hyperpage{1215}
  \item {opacity\_end}
    \subitem {mom\_opacity}, \hyperpage{1985}
  \item {opacity\_from\_chl}
    \subitem {mom\_opacity}, \hyperpage{1985}
  \item {opacity\_init}
    \subitem {mom\_opacity}, \hyperpage{1988}
  \item {opacity\_manizza}
    \subitem {mom\_opacity}, \hyperpage{1991}
  \item {opacity\_morel}
    \subitem {mom\_opacity}, \hyperpage{1991}
  \item {open\_boundary\_apply\_normal\_flow}
    \subitem {mom\_open\_boundary}, \hyperpage{2019}
  \item {open\_boundary\_config}
    \subitem {mom\_open\_boundary}, \hyperpage{2019}
  \item {open\_boundary\_dealloc}
    \subitem {mom\_open\_boundary}, \hyperpage{2023}
  \item {open\_boundary\_end}
    \subitem {mom\_open\_boundary}, \hyperpage{2024}
  \item {open\_boundary\_impose\_land\_mask}
    \subitem {mom\_open\_boundary}, \hyperpage{2024}
  \item {open\_boundary\_impose\_normal\_slope}
    \subitem {mom\_open\_boundary}, \hyperpage{2026}
  \item {open\_boundary\_init}
    \subitem {mom\_open\_boundary}, \hyperpage{2027}
  \item {open\_boundary\_query}
    \subitem {mom\_open\_boundary}, \hyperpage{2028}
  \item {open\_boundary\_register\_restarts}
    \subitem {mom\_open\_boundary}, \hyperpage{2029}
  \item {open\_boundary\_test\_extern\_h}
    \subitem {mom\_open\_boundary}, \hyperpage{2031}
  \item {open\_boundary\_test\_extern\_uv}
    \subitem {mom\_open\_boundary}, \hyperpage{2031}
  \item {open\_boundary\_zero\_normal\_flow}
    \subitem {mom\_open\_boundary}, \hyperpage{2032}
  \item {open\_doc\_file}
    \subitem {mom\_document}, \hyperpage{1088}
  \item {open\_param\_file}
    \subitem {mom\_file\_parser}, \hyperpage{1378}
  \item {open\_profile\_file}
    \subitem {write\_ocean\_obs\_mod}, \hyperpage{2953}
  \item {open\_restart\_units}
    \subitem {mom\_restart}, \hyperpage{2228}
  \item {openmultilinecomment}
    \subitem {mom\_file\_parser}, \hyperpage{1380}
  \item {openparameterblock}
    \subitem {mom\_file\_parser}, \hyperpage{1380}
  \item {optics\_nbands}
    \subitem {mom\_opacity}, \hyperpage{1992}
  \item {overridewarninghasbeenissued}
    \subitem {mom\_file\_parser}, \hyperpage{1381}

  \indexspace

  \item {p1m\_boundary\_extrapolation}
    \subitem {p1m\_functions}, \hyperpage{2783}
  \item {p1m\_functions}, \hyperpage{2782}
    \subitem {p1m\_boundary\_extrapolation}, \hyperpage{2783}
    \subitem {p1m\_interpolation}, \hyperpage{2784}
  \item {p1m\_interpolation}
    \subitem {p1m\_functions}, \hyperpage{2784}
  \item {p3m\_boundary\_extrapolation}
    \subitem {p3m\_functions}, \hyperpage{2789}
  \item {p3m\_functions}, \hyperpage{2785}
    \subitem {build\_cubic\_interpolant}, \hyperpage{2786}
    \subitem {is\_cubic\_monotonic}, \hyperpage{2787}
    \subitem {monotonize\_cubic}, \hyperpage{2787}
    \subitem {p3m\_boundary\_extrapolation}, \hyperpage{2789}
    \subitem {p3m\_interpolation}, \hyperpage{2792}
    \subitem {p3m\_limiter}, \hyperpage{2793}
  \item {p3m\_interpolation}
    \subitem {p3m\_functions}, \hyperpage{2792}
  \item {p3m\_limiter}
    \subitem {p3m\_functions}, \hyperpage{2793}
  \item {parse\_for\_tracer\_reservoirs}
    \subitem {mom\_open\_boundary}, \hyperpage{2033}
  \item {parse\_segment\_data\_str}
    \subitem {mom\_open\_boundary}, \hyperpage{2034}
  \item {parse\_segment\_manifest\_str}
    \subitem {mom\_open\_boundary}, \hyperpage{2035}
  \item {parse\_segment\_param\_real}
    \subitem {mom\_open\_boundary}, \hyperpage{2036}
  \item {parse\_segment\_str}
    \subitem {mom\_open\_boundary}, \hyperpage{2037}
  \item {partitionmode}
    \subitem {mom\_wave\_interface}, \hyperpage{2709}
  \item {pass\_var\_2d}
    \subitem {mom\_domains}, \hyperpage{1118}
    \subitem {mom\_domains::pass\_var}, \hyperpage{3458}
  \item {pass\_var\_3d}
    \subitem {mom\_domains}, \hyperpage{1120}
    \subitem {mom\_domains::pass\_var}, \hyperpage{3461}
  \item {pass\_var\_complete\_2d}
    \subitem {mom\_domains}, \hyperpage{1121}
    \subitem {mom\_domains::pass\_var\_complete}, \hyperpage{3462}
  \item {pass\_var\_complete\_3d}
    \subitem {mom\_domains}, \hyperpage{1122}
    \subitem {mom\_domains::pass\_var\_complete}, \hyperpage{3463}
  \item {pass\_var\_start\_2d}
    \subitem {mom\_domains}, \hyperpage{1124}
    \subitem {mom\_domains::pass\_var\_start}, \hyperpage{3465}
  \item {pass\_var\_start\_3d}
    \subitem {mom\_domains}, \hyperpage{1125}
    \subitem {mom\_domains::pass\_var\_start}, \hyperpage{3466}
  \item {pass\_vector\_2d}
    \subitem {mom\_domains}, \hyperpage{1126}
    \subitem {mom\_domains::pass\_vector}, \hyperpage{3468}
  \item {pass\_vector\_3d}
    \subitem {mom\_domains}, \hyperpage{1127}
    \subitem {mom\_domains::pass\_vector}, \hyperpage{3469}
  \item {pass\_vector\_complete\_2d}
    \subitem {mom\_domains}, \hyperpage{1129}
    \subitem {mom\_domains::pass\_vector\_complete}, \hyperpage{3471}
  \item {pass\_vector\_complete\_3d}
    \subitem {mom\_domains}, \hyperpage{1130}
    \subitem {mom\_domains::pass\_vector\_complete}, \hyperpage{3472}
  \item {pass\_vector\_start\_2d}
    \subitem {mom\_domains}, \hyperpage{1131}
    \subitem {mom\_domains::pass\_vector\_start}, \hyperpage{3474}
  \item {pass\_vector\_start\_3d}
    \subitem {mom\_domains}, \hyperpage{1133}
    \subitem {mom\_domains::pass\_vector\_start}, \hyperpage{3475}
  \item {PCM\_functions}, \hyperpage{2795}
  \item {pcm\_functions}, \hyperpage{2795}
    \subitem {pcm\_reconstruction}, \hyperpage{2795}
  \item {pcm\_reconstruction}
    \subitem {pcm\_functions}, \hyperpage{2795}
  \item {periodic\_int}
    \subitem {mom\_controlled\_forcing}, \hyperpage{713}
  \item {periodic\_real}
    \subitem {mom\_controlled\_forcing}, \hyperpage{713}
  \item {phillips\_initialization}, \hyperpage{2796}
    \subitem {phillips\_initialize\_sponges}, \hyperpage{2797}
    \subitem {phillips\_initialize\_thickness}, \hyperpage{2798}
    \subitem {phillips\_initialize\_topography}, \hyperpage{2799}
    \subitem {phillips\_initialize\_velocity}, \hyperpage{2800}
    \subitem {sech}, \hyperpage{2802}
  \item {phillips\_initialize\_sponges}
    \subitem {phillips\_initialization}, \hyperpage{2797}
  \item {phillips\_initialize\_thickness}
    \subitem {phillips\_initialization}, \hyperpage{2798}
  \item {phillips\_initialize\_topography}
    \subitem {phillips\_initialization}, \hyperpage{2799}
  \item {phillips\_initialize\_velocity}
    \subitem {phillips\_initialization}, \hyperpage{2800}
  \item {pi}
    \subitem {mom\_wave\_interface}, \hyperpage{2709}
  \item {plm\_boundary\_extrapolation}
    \subitem {plm\_functions}, \hyperpage{2803}
  \item {plm\_diff}
    \subitem {mom\_neutral\_diffusion}, \hyperpage{1899}
  \item {plm\_extrapolate\_slope}
    \subitem {plm\_functions}, \hyperpage{2804}
  \item {plm\_functions}, \hyperpage{2802}
    \subitem {plm\_boundary\_extrapolation}, \hyperpage{2803}
    \subitem {plm\_extrapolate\_slope}, \hyperpage{2804}
    \subitem {plm\_monotonized\_slope}, \hyperpage{2805}
    \subitem {plm\_reconstruction}, \hyperpage{2806}
    \subitem {plm\_slope\_cw}, \hyperpage{2807}
    \subitem {plm\_slope\_wa}, \hyperpage{2808}
  \item {plm\_monotonized\_slope}
    \subitem {plm\_functions}, \hyperpage{2805}
  \item {plm\_reconstruction}
    \subitem {plm\_functions}, \hyperpage{2806}
  \item {plm\_slope\_cw}
    \subitem {plm\_functions}, \hyperpage{2807}
  \item {plm\_slope\_wa}
    \subitem {plm\_functions}, \hyperpage{2808}
  \item {pointaccel\_init}
    \subitem {mom\_pointaccel}, \hyperpage{2081}
  \item {polynomial\_functions}, \hyperpage{2809}
    \subitem {evaluation\_polynomial}, \hyperpage{2809}
    \subitem {first\_derivative\_polynomial}, \hyperpage{2810}
    \subitem {integration\_polynomial}, \hyperpage{2811}
  \item {popblocklevel}
    \subitem {mom\_file\_parser}, \hyperpage{1381}
  \item {populate\_param\_data}
    \subitem {mom\_file\_parser}, \hyperpage{1382}
  \item {post\_data\_0d}
    \subitem {mom\_diag\_mediator}, \hyperpage{959}
    \subitem {mom\_diag\_mediator::post\_data}, \hyperpage{3480}
  \item {post\_data\_1d\_k}
    \subitem {mom\_diag\_mediator}, \hyperpage{960}
    \subitem {mom\_diag\_mediator::post\_data}, \hyperpage{3480}
  \item {post\_data\_2d}
    \subitem {mom\_diag\_mediator}, \hyperpage{961}
    \subitem {mom\_diag\_mediator::post\_data}, \hyperpage{3481}
  \item {post\_data\_2d\_low}
    \subitem {mom\_diag\_mediator}, \hyperpage{961}
  \item {post\_data\_3d}
    \subitem {mom\_diag\_mediator}, \hyperpage{964}
    \subitem {mom\_diag\_mediator::post\_data}, \hyperpage{3482}
  \item {post\_data\_3d\_low}
    \subitem {mom\_diag\_mediator}, \hyperpage{965}
  \item {post\_offline\_convergence\_diags}
    \subitem {mom\_offline\_main}, \hyperpage{1973}
  \item {post\_surface\_dyn\_diags}
    \subitem {mom\_diagnostics}, \hyperpage{1037}
  \item {post\_surface\_thermo\_diags}
    \subitem {mom\_diagnostics}, \hyperpage{1037}
  \item {post\_tidal\_diagnostics}
    \subitem {mom\_tidal\_mixing}, \hyperpage{2532}
  \item {post\_tracer\_diagnostics\_at\_sync}
    \subitem {mom\_tracer\_registry}, \hyperpage{2611}
  \item {post\_tracer\_transport\_diagnostics}
    \subitem {mom\_tracer\_registry}, \hyperpage{2612}
  \item {post\_transport\_diagnostics}
    \subitem {mom\_diagnostics}, \hyperpage{1040}
  \item {post\_xy\_average}
    \subitem {mom\_diag\_mediator}, \hyperpage{968}
  \item {postale\_tracer\_diagnostics}
    \subitem {mom\_tracer\_registry}, \hyperpage{2613}
  \item {ppm\_angular\_advect}
    \subitem {mom\_internal\_tides}, \hyperpage{1681}
  \item {ppm\_ave}
    \subitem {mom\_neutral\_diffusion}, \hyperpage{1900}
  \item {ppm\_boundary\_extrapolation}
    \subitem {ppm\_functions}, \hyperpage{2812}
  \item {ppm\_edge}
    \subitem {mom\_neutral\_diffusion}, \hyperpage{1901}
  \item {ppm\_functions}, \hyperpage{2812}
    \subitem {hneglect\_dflt}, \hyperpage{2816}
    \subitem {ppm\_boundary\_extrapolation}, \hyperpage{2812}
    \subitem {ppm\_limiter\_standard}, \hyperpage{2814}
    \subitem {ppm\_reconstruction}, \hyperpage{2816}
  \item {ppm\_left\_right\_edge\_values}
    \subitem {mom\_neutral\_diffusion}, \hyperpage{1902}
  \item {ppm\_limit\_cw84}
    \subitem {mom\_continuity\_ppm}, \hyperpage{681}
  \item {ppm\_limit\_pos}
    \subitem {mom\_continuity\_ppm}, \hyperpage{682}
    \subitem {mom\_internal\_tides}, \hyperpage{1682}
  \item {ppm\_limiter\_standard}
    \subitem {ppm\_functions}, \hyperpage{2814}
  \item {ppm\_reconstruction}
    \subitem {ppm\_functions}, \hyperpage{2816}
  \item {ppm\_reconstruction\_x}
    \subitem {mom\_continuity\_ppm}, \hyperpage{683}
    \subitem {mom\_internal\_tides}, \hyperpage{1683}
  \item {ppm\_reconstruction\_y}
    \subitem {mom\_continuity\_ppm}, \hyperpage{685}
    \subitem {mom\_internal\_tides}, \hyperpage{1685}
  \item {pqm\_boundary\_extrapolation}
    \subitem {pqm\_functions}, \hyperpage{2817}
  \item {pqm\_boundary\_extrapolation\_v1}
    \subitem {pqm\_functions}, \hyperpage{2819}
  \item {pqm\_functions}, \hyperpage{2817}
    \subitem {pqm\_boundary\_extrapolation}, \hyperpage{2817}
    \subitem {pqm\_boundary\_extrapolation\_v1}, \hyperpage{2819}
    \subitem {pqm\_limiter}, \hyperpage{2824}
    \subitem {pqm\_reconstruction}, \hyperpage{2828}
  \item {pqm\_limiter}
    \subitem {pqm\_functions}, \hyperpage{2824}
  \item {pqm\_reconstruction}
    \subitem {pqm\_functions}, \hyperpage{2828}
  \item {preale\_tracer\_diagnostics}
    \subitem {mom\_tracer\_registry}, \hyperpage{2613}
  \item {precip\_0}
    \subitem {mom\_controlled\_forcing::ctrl\_forcing\_cs}, 
		\hyperpage{3120}
  \item {precip\_cyc}
    \subitem {mom\_controlled\_forcing::ctrl\_forcing\_cs}, 
		\hyperpage{3120}
  \item {pressureforce}
    \subitem {mom\_pressureforce}, \hyperpage{2093}
  \item {pressureforce\_end}
    \subitem {mom\_pressureforce}, \hyperpage{2094}
  \item {pressureforce\_fv\_bouss}
    \subitem {mom\_pressureforce\_fv}, \hyperpage{2096}
  \item {pressureforce\_fv\_end}
    \subitem {mom\_pressureforce\_fv}, \hyperpage{2101}
  \item {pressureforce\_fv\_init}
    \subitem {mom\_pressureforce\_fv}, \hyperpage{2102}
  \item {pressureforce\_fv\_nonbouss}
    \subitem {mom\_pressureforce\_fv}, \hyperpage{2103}
  \item {pressureforce\_init}
    \subitem {mom\_pressureforce}, \hyperpage{2094}
  \item {pressureforce\_mont\_bouss}
    \subitem {mom\_pressureforce\_mont}, \hyperpage{2109}
  \item {pressureforce\_mont\_end}
    \subitem {mom\_pressureforce\_mont}, \hyperpage{2112}
  \item {pressureforce\_mont\_init}
    \subitem {mom\_pressureforce\_mont}, \hyperpage{2113}
  \item {pressureforce\_mont\_nonbouss}
    \subitem {mom\_pressureforce\_mont}, \hyperpage{2114}
  \item {propagate}
    \subitem {mom\_internal\_tides}, \hyperpage{1686}
  \item {propagate\_corner\_spread}
    \subitem {mom\_internal\_tides}, \hyperpage{1688}
  \item {propagate\_int\_tide}
    \subitem {mom\_internal\_tides}, \hyperpage{1692}
  \item {propagate\_x}
    \subitem {mom\_internal\_tides}, \hyperpage{1698}
  \item {propagate\_y}
    \subitem {mom\_internal\_tides}, \hyperpage{1699}
  \item {pseudo\_salt\_stock}
    \subitem {pseudo\_salt\_tracer}, \hyperpage{2831}
  \item {pseudo\_salt\_tracer}, \hyperpage{2829}
    \subitem {initialize\_pseudo\_salt\_tracer}, \hyperpage{2830}
    \subitem {pseudo\_salt\_stock}, \hyperpage{2831}
    \subitem {pseudo\_salt\_tracer\_column\_physics}, \hyperpage{2832}
    \subitem {pseudo\_salt\_tracer\_end}, \hyperpage{2834}
    \subitem {pseudo\_salt\_tracer\_surface\_state}, \hyperpage{2834}
    \subitem {register\_pseudo\_salt\_tracer}, \hyperpage{2835}
  \item {pseudo\_salt\_tracer::pseudo\_salt\_tracer\_cs}, 
		\hyperpage{3490}
  \item {pseudo\_salt\_tracer\_column\_physics}
    \subitem {pseudo\_salt\_tracer}, \hyperpage{2832}
  \item {pseudo\_salt\_tracer\_end}
    \subitem {pseudo\_salt\_tracer}, \hyperpage{2834}
  \item {pseudo\_salt\_tracer\_surface\_state}
    \subitem {pseudo\_salt\_tracer}, \hyperpage{2834}
  \item {pushblocklevel}
    \subitem {mom\_file\_parser}, \hyperpage{1383}
  \item {pv\_adv\_scheme}
    \subitem {mom\_coriolisadv::coriolisadv\_cs}, \hyperpage{3111}

  \indexspace

  \item {quad\_area}
    \subitem {mom\_ice\_shelf\_dynamics}, \hyperpage{1642}
  \item {query\_averaging\_enabled}
    \subitem {mom\_diag\_mediator}, \hyperpage{969}
  \item {query\_compressible}
    \subitem {mom\_eos}, \hyperpage{1286}
  \item {query\_initialized\_0d}
    \subitem {mom\_restart}, \hyperpage{2231}
    \subitem {mom\_restart::query\_initialized}, \hyperpage{3499}
  \item {query\_initialized\_0d\_name}
    \subitem {mom\_restart}, \hyperpage{2231}
    \subitem {mom\_restart::query\_initialized}, \hyperpage{3500}
  \item {query\_initialized\_1d}
    \subitem {mom\_restart}, \hyperpage{2232}
    \subitem {mom\_restart::query\_initialized}, \hyperpage{3500}
  \item {query\_initialized\_1d\_name}
    \subitem {mom\_restart}, \hyperpage{2232}
    \subitem {mom\_restart::query\_initialized}, \hyperpage{3501}
  \item {query\_initialized\_2d}
    \subitem {mom\_restart}, \hyperpage{2233}
    \subitem {mom\_restart::query\_initialized}, \hyperpage{3502}
  \item {query\_initialized\_2d\_name}
    \subitem {mom\_restart}, \hyperpage{2234}
    \subitem {mom\_restart::query\_initialized}, \hyperpage{3502}
  \item {query\_initialized\_3d}
    \subitem {mom\_restart}, \hyperpage{2234}
    \subitem {mom\_restart::query\_initialized}, \hyperpage{3503}
  \item {query\_initialized\_3d\_name}
    \subitem {mom\_restart}, \hyperpage{2235}
    \subitem {mom\_restart::query\_initialized}, \hyperpage{3503}
  \item {query\_initialized\_4d}
    \subitem {mom\_restart}, \hyperpage{2236}
    \subitem {mom\_restart::query\_initialized}, \hyperpage{3504}
  \item {query\_initialized\_4d\_name}
    \subitem {mom\_restart}, \hyperpage{2236}
    \subitem {mom\_restart::query\_initialized}, \hyperpage{3505}
  \item {query\_initialized\_name}
    \subitem {mom\_restart}, \hyperpage{2237}
    \subitem {mom\_restart::query\_initialized}, \hyperpage{3505}
  \item {query\_vardesc}
    \subitem {mom\_io}, \hyperpage{1725}

  \indexspace

  \item {radiation\_open\_bdry\_conds}
    \subitem {mom\_open\_boundary}, \hyperpage{2039}
  \item {random\_01}
    \subitem {mom\_random}, \hyperpage{2123}
  \item {random\_0d\_constructor}
    \subitem {mom\_random}, \hyperpage{2123}
  \item {random\_2d\_01}
    \subitem {mom\_random}, \hyperpage{2124}
  \item {random\_2d\_constructor}
    \subitem {mom\_random}, \hyperpage{2124}
  \item {random\_2d\_norm}
    \subitem {mom\_random}, \hyperpage{2125}
  \item {random\_destruct}
    \subitem {mom\_random}, \hyperpage{2126}
  \item {random\_norm}
    \subitem {mom\_random}, \hyperpage{2126}
  \item {random\_unit\_tests}
    \subitem {mom\_random}, \hyperpage{2126}
  \item {range\_ok}
    \subitem {user\_change\_diffusivity}, \hyperpage{2921}
  \item {ratio\_max}
    \subitem {mom\_continuity\_ppm}, \hyperpage{687}
  \item {read\_all\_input}
    \subitem {mom\_offline\_main}, \hyperpage{1973}
  \item {read\_axis\_data}
    \subitem {mom\_io}, \hyperpage{1727}
  \item {read\_depth\_list}
    \subitem {mom\_sum\_output}, \hyperpage{2433}
  \item {read\_face\_length\_list}
    \subitem {mom\_shared\_initialization}, \hyperpage{2340}
  \item {read\_param\_char}
    \subitem {mom\_file\_parser}, \hyperpage{1384}
    \subitem {mom\_file\_parser::read\_param}, \hyperpage{3507}
  \item {read\_param\_char\_array}
    \subitem {mom\_file\_parser}, \hyperpage{1384}
    \subitem {mom\_file\_parser::read\_param}, \hyperpage{3507}
  \item {read\_param\_int}
    \subitem {mom\_file\_parser}, \hyperpage{1385}
    \subitem {mom\_file\_parser::read\_param}, \hyperpage{3508}
  \item {read\_param\_int\_array}
    \subitem {mom\_file\_parser}, \hyperpage{1386}
    \subitem {mom\_file\_parser::read\_param}, \hyperpage{3509}
  \item {read\_param\_logical}
    \subitem {mom\_file\_parser}, \hyperpage{1387}
    \subitem {mom\_file\_parser::read\_param}, \hyperpage{3510}
  \item {read\_param\_real}
    \subitem {mom\_file\_parser}, \hyperpage{1387}
    \subitem {mom\_file\_parser::read\_param}, \hyperpage{3510}
  \item {read\_param\_real\_array}
    \subitem {mom\_file\_parser}, \hyperpage{1388}
    \subitem {mom\_file\_parser::read\_param}, \hyperpage{3511}
  \item {read\_param\_time}
    \subitem {mom\_file\_parser}, \hyperpage{1389}
    \subitem {mom\_file\_parser::read\_param}, \hyperpage{3512}
  \item {read\_tidal\_constituents}
    \subitem {mom\_tidal\_mixing}, \hyperpage{2533}
  \item {read\_tidal\_energy}
    \subitem {mom\_tidal\_mixing}, \hyperpage{2535}
  \item {read\_z\_edges}
    \subitem {mom\_tracer\_z\_init}, \hyperpage{2629}
  \item {real\_array\_string}
    \subitem {mom\_document}, \hyperpage{1089}
  \item {real\_string}
    \subitem {mom\_document}, \hyperpage{1090}
  \item {real\_to\_efp}
    \subitem {mom\_coms}, \hyperpage{649}
  \item {real\_to\_ints}
    \subitem {mom\_coms}, \hyperpage{649}
  \item {real\_to\_time}
    \subitem {mom\_time\_manager}, \hyperpage{2544}
  \item {reflect}
    \subitem {mom\_internal\_tides}, \hyperpage{1701}
  \item {refract}
    \subitem {mom\_internal\_tides}, \hyperpage{1703}
  \item {regional\_dyes}, \hyperpage{2836}
    \subitem {dye\_stock}, \hyperpage{2837}
    \subitem {dye\_tracer\_column\_physics}, \hyperpage{2838}
    \subitem {dye\_tracer\_surface\_state}, \hyperpage{2839}
    \subitem {initialize\_dye\_tracer}, \hyperpage{2840}
    \subitem {regional\_dyes\_end}, \hyperpage{2841}
    \subitem {register\_dye\_tracer}, \hyperpage{2842}
  \item {regional\_dyes::dye\_tracer\_cs}, \hyperpage{3184}
  \item {regional\_dyes\_end}
    \subitem {regional\_dyes}, \hyperpage{2841}
  \item {register\_advection\_test\_tracer}
    \subitem {advection\_test\_tracer}, \hyperpage{157}
  \item {register\_barotropic\_restarts}
    \subitem {mom\_barotropic}, \hyperpage{512}
  \item {register\_boundary\_impulse\_tracer}
    \subitem {boundary\_impulse\_tracer}, \hyperpage{191}
  \item {register\_cell\_measure}
    \subitem {mom\_diag\_mediator}, \hyperpage{969}
  \item {register\_ctrl\_forcing\_restarts}
    \subitem {mom\_controlled\_forcing}, \hyperpage{714}
  \item {register\_diag\_field}
    \subitem {mom\_diag\_mediator}, \hyperpage{970}
  \item {register\_diag\_field\_array\_fms}
    \subitem {mom\_diag\_manager\_wrapper}, \hyperpage{911}
    \subitem {mom\_diag\_manager\_wrapper::register\_diag\_field\_fms}, 
		\hyperpage{3514}
  \item {register\_diag\_field\_expand\_axes}
    \subitem {mom\_diag\_mediator}, \hyperpage{974}
  \item {register\_diag\_field\_expand\_cmor}
    \subitem {mom\_diag\_mediator}, \hyperpage{976}
  \item {register\_diag\_field\_scalar\_fms}
    \subitem {mom\_diag\_manager\_wrapper}, \hyperpage{912}
    \subitem {mom\_diag\_manager\_wrapper::register\_diag\_field\_fms}, 
		\hyperpage{3515}
  \item {register\_diags}
    \subitem {mom}, \hyperpage{376}
  \item {register\_diags\_offline\_transport}
    \subitem {mom\_offline\_main}, \hyperpage{1974}
  \item {register\_dome\_tracer}
    \subitem {dome\_tracer}, \hyperpage{254}
  \item {register\_dye\_tracer}
    \subitem {regional\_dyes}, \hyperpage{2842}
  \item {register\_dyed\_channel\_obc}
    \subitem {dyed\_channel\_initialization}, \hyperpage{270}
  \item {register\_dyed\_obc\_tracer}
    \subitem {dyed\_obc\_tracer}, \hyperpage{274}
  \item {register\_file\_obc}
    \subitem {mom\_open\_boundary}, \hyperpage{2053}
  \item {register\_forcing\_type\_diags}
    \subitem {mom\_forcing\_type}, \hyperpage{1437}
  \item {register\_ice\_shelf\_dyn\_restarts}
    \subitem {mom\_ice\_shelf\_dynamics}, \hyperpage{1642}
  \item {register\_ideal\_age\_tracer}
    \subitem {ideal\_age\_example}, \hyperpage{303}
  \item {register\_isomip\_tracer}
    \subitem {isomip\_tracer}, \hyperpage{330}
  \item {register\_kelvin\_obc}
    \subitem {kelvin\_initialization}, \hyperpage{337}
  \item {register\_mom\_generic\_tracer}
    \subitem {mom\_generic\_tracer}, \hyperpage{1471}
  \item {register\_obc}
    \subitem {mom\_open\_boundary}, \hyperpage{2054}
  \item {register\_obsolete\_diagnostics}
    \subitem {mom\_obsolete\_diagnostics}, \hyperpage{1912}
  \item {register\_ocmip2\_cfc}
    \subitem {mom\_ocmip2\_cfc}, \hyperpage{1925}
  \item {register\_oil\_tracer}
    \subitem {oil\_tracer}, \hyperpage{2780}
  \item {register\_pseudo\_salt\_tracer}
    \subitem {pseudo\_salt\_tracer}, \hyperpage{2835}
  \item {register\_restart\_field\_0d}
    \subitem {mom\_restart}, \hyperpage{2238}
    \subitem {mom\_restart::register\_restart\_field}, \hyperpage{3517}
  \item {register\_restart\_field\_1d}
    \subitem {mom\_restart}, \hyperpage{2238}
    \subitem {mom\_restart::register\_restart\_field}, \hyperpage{3519}
  \item {register\_restart\_field\_2d}
    \subitem {mom\_restart}, \hyperpage{2239}
    \subitem {mom\_restart::register\_restart\_field}, \hyperpage{3520}
  \item {register\_restart\_field\_3d}
    \subitem {mom\_restart}, \hyperpage{2240}
    \subitem {mom\_restart::register\_restart\_field}, \hyperpage{3521}
  \item {register\_restart\_field\_4d}
    \subitem {mom\_restart}, \hyperpage{2241}
    \subitem {mom\_restart::register\_restart\_field}, \hyperpage{3522}
  \item {register\_restart\_field\_as\_obsolete}
    \subitem {mom\_restart}, \hyperpage{2242}
  \item {register\_restart\_field\_ptr0d}
    \subitem {mom\_restart}, \hyperpage{2242}
    \subitem {mom\_restart::register\_restart\_field}, \hyperpage{3522}
  \item {register\_restart\_field\_ptr1d}
    \subitem {mom\_restart}, \hyperpage{2243}
    \subitem {mom\_restart::register\_restart\_field}, \hyperpage{3523}
  \item {register\_restart\_field\_ptr2d}
    \subitem {mom\_restart}, \hyperpage{2244}
    \subitem {mom\_restart::register\_restart\_field}, \hyperpage{3524}
  \item {register\_restart\_field\_ptr3d}
    \subitem {mom\_restart}, \hyperpage{2244}
    \subitem {mom\_restart::register\_restart\_field}, \hyperpage{3525}
  \item {register\_restart\_field\_ptr4d}
    \subitem {mom\_restart}, \hyperpage{2245}
    \subitem {mom\_restart::register\_restart\_field}, \hyperpage{3525}
  \item {register\_restart\_pair\_ptr2d}
    \subitem {mom\_restart}, \hyperpage{2246}
    \subitem {mom\_restart::register\_restart\_pair}, \hyperpage{3526}
  \item {register\_restart\_pair\_ptr3d}
    \subitem {mom\_restart}, \hyperpage{2246}
    \subitem {mom\_restart::register\_restart\_pair}, \hyperpage{3527}
  \item {register\_restart\_pair\_ptr4d}
    \subitem {mom\_restart}, \hyperpage{2247}
    \subitem {mom\_restart::register\_restart\_pair}, \hyperpage{3528}
  \item {register\_restarts\_dyn\_split\_rk2}
    \subitem {mom\_dynamics\_split\_rk2}, \hyperpage{1147}
  \item {register\_restarts\_dyn\_unsplit}
    \subitem {mom\_dynamics\_unsplit}, \hyperpage{1163}
  \item {register\_restarts\_dyn\_unsplit\_rk2}
    \subitem {mom\_dynamics\_unsplit\_rk2}, \hyperpage{1173}
  \item {register\_rgc\_tracer}
    \subitem {rgc\_tracer}, \hyperpage{2888}
  \item {register\_scalar\_field}
    \subitem {mom\_diag\_mediator}, \hyperpage{979}
  \item {register\_segment\_tracer}
    \subitem {mom\_open\_boundary}, \hyperpage{2054}
  \item {register\_shelfwave\_obc}
    \subitem {shelfwave\_initialization}, \hyperpage{2907}
  \item {register\_static\_field}
    \subitem {mom\_diag\_mediator}, \hyperpage{982}
  \item {register\_surface\_diags}
    \subitem {mom\_diagnostics}, \hyperpage{1042}
  \item {register\_temp\_salt\_segments}
    \subitem {mom\_open\_boundary}, \hyperpage{2056}
  \item {register\_tidal\_bay\_obc}
    \subitem {tidal\_bay\_initialization}, \hyperpage{2919}
  \item {register\_time\_deriv}
    \subitem {mom\_diagnostics}, \hyperpage{1043}
  \item {register\_tracer}
    \subitem {mom\_tracer\_registry}, \hyperpage{2614}
  \item {register\_tracer\_diagnostics}
    \subitem {mom\_tracer\_registry}, \hyperpage{2618}
  \item {register\_transport\_diags}
    \subitem {mom\_diagnostics}, \hyperpage{1044}
  \item {regrid\_consts}, \hyperpage{2844}
    \subitem {coordinatemode}, \hyperpage{2845}
    \subitem {coordinateunitsi}, \hyperpage{2845}
    \subitem {coordinateunitss}, \hyperpage{2846}
    \subitem {state\_dependent\_char}, \hyperpage{2846}
    \subitem {state\_dependent\_int}, \hyperpage{2847}
  \item {regrid\_consts::coordinateunits}, \hyperpage{3107}
    \subitem {coordinateunitsi}, \hyperpage{3107}
    \subitem {coordinateunitss}, \hyperpage{3108}
  \item {regrid\_consts::state\_dependent}, \hyperpage{3582}
    \subitem {state\_dependent\_char}, \hyperpage{3582}
    \subitem {state\_dependent\_int}, \hyperpage{3582}
  \item {regrid\_edge\_values}, \hyperpage{2847}
    \subitem {average\_discontinuous\_edge\_values}, \hyperpage{2848}
    \subitem {bound\_edge\_values}, \hyperpage{2849}
    \subitem {check\_discontinuous\_edge\_values}, \hyperpage{2850}
    \subitem {edge\_slopes\_implicit\_h3}, \hyperpage{2850}
    \subitem {edge\_slopes\_implicit\_h5}, \hyperpage{2853}
    \subitem {edge\_values\_explicit\_h2}, \hyperpage{2856}
    \subitem {edge\_values\_explicit\_h4}, \hyperpage{2857}
    \subitem {edge\_values\_implicit\_h4}, \hyperpage{2859}
    \subitem {edge\_values\_implicit\_h6}, \hyperpage{2862}
    \subitem {end\_value\_h4}, \hyperpage{2865}
    \subitem {linear\_solver}, \hyperpage{2867}
    \subitem {solve\_diag\_dominant\_tridiag}, \hyperpage{2868}
    \subitem {test\_line}, \hyperpage{2869}
  \item {regrid\_interp}, \hyperpage{2870}
    \subitem {build\_and\_interpolate\_grid}, \hyperpage{2871}
    \subitem {get\_polynomial\_coordinate}, \hyperpage{2872}
    \subitem {interpolate\_grid}, \hyperpage{2875}
    \subitem {interpolation\_scheme}, \hyperpage{2876}
    \subitem {regridding\_set\_ppolys}, \hyperpage{2876}
    \subitem {set\_interp\_extrap}, \hyperpage{2879}
    \subitem {set\_interp\_scheme}, \hyperpage{2880}
  \item {regrid\_interp::interp\_cs\_type}, \hyperpage{3311}
  \item {regrid\_solvers}, \hyperpage{2880}
    \subitem {linear\_solver}, \hyperpage{2881}
    \subitem {solve\_diag\_dominant\_tridiag}, \hyperpage{2882}
    \subitem {solve\_linear\_system}, \hyperpage{2883}
    \subitem {solve\_tridiagonal\_system}, \hyperpage{2884}
  \item {regridding\_main}
    \subitem {mom\_regridding}, \hyperpage{2166}
  \item {regridding\_set\_ppolys}
    \subitem {regrid\_interp}, \hyperpage{2876}
  \item {regularize\_ints}
    \subitem {mom\_coms}, \hyperpage{650}
  \item {regularize\_layers}
    \subitem {mom\_regularize\_layers}, \hyperpage{2178}
  \item {regularize\_layers\_init}
    \subitem {mom\_regularize\_layers}, \hyperpage{2179}
  \item {regularize\_surface}
    \subitem {mom\_regularize\_layers}, \hyperpage{2181}
  \item {reintegrate\_column}
    \subitem {mom\_diag\_vkernels}, \hyperpage{1011}
  \item {remaining\_transport\_sum}
    \subitem {mom\_offline\_main}, \hyperpage{1975}
  \item {remap\_all\_state\_vars}
    \subitem {mom\_ale}, \hyperpage{417}
  \item {remap\_via\_sub\_cells}
    \subitem {mom\_remapping}, \hyperpage{2205}
  \item {remapbydeltaz}
    \subitem {mom\_remapping}, \hyperpage{2211}
  \item {remapbyprojection}
    \subitem {mom\_remapping}, \hyperpage{2213}
  \item {remapping\_core\_h}
    \subitem {mom\_remapping}, \hyperpage{2214}
  \item {remapping\_core\_w}
    \subitem {mom\_remapping}, \hyperpage{2216}
  \item {remapping\_set\_param}
    \subitem {mom\_remapping}, \hyperpage{2217}
  \item {remapping\_unit\_tests}
    \subitem {mom\_remapping}, \hyperpage{2218}
  \item {remove\_spaces}
    \subitem {mom\_string\_functions}, \hyperpage{2422}
  \item {removecomments}
    \subitem {mom\_file\_parser}, \hyperpage{1390}
  \item {reopen\_file}
    \subitem {mom\_io}, \hyperpage{1727}
  \item {replacetabs}
    \subitem {mom\_file\_parser}, \hyperpage{1391}
  \item {reproducing\_efp\_sum\_2d}
    \subitem {mom\_coms}, \hyperpage{651}
    \subitem {mom\_coms::reproducing\_sum\_efp}, \hyperpage{3539}
  \item {reproducing\_sum\_2d}
    \subitem {mom\_coms}, \hyperpage{653}
    \subitem {mom\_coms::reproducing\_sum}, \hyperpage{3534}
  \item {reproducing\_sum\_3d}
    \subitem {mom\_coms}, \hyperpage{655}
    \subitem {mom\_coms::reproducing\_sum}, \hyperpage{3536}
  \item {rescale\_dyn\_horgrid\_bathymetry}
    \subitem {mom\_dyn\_horgrid}, \hyperpage{1138}
  \item {rescale\_grid\_bathymetry}
    \subitem {mom\_grid}, \hyperpage{1492}
  \item {rescaled\_string}
    \subitem {mom\_energetic\_pbl}, \hyperpage{1216}
  \item {reset\_face\_lengths\_file}
    \subitem {mom\_shared\_initialization}, \hyperpage{2341}
  \item {reset\_face\_lengths\_list}
    \subitem {mom\_shared\_initialization}, \hyperpage{2342}
  \item {reset\_face\_lengths\_named}
    \subitem {mom\_shared\_initialization}, \hyperpage{2346}
  \item {resort\_ml}
    \subitem {mom\_bulk\_mixed\_layer}, \hyperpage{586}
  \item {restart\_end}
    \subitem {mom\_restart}, \hyperpage{2248}
  \item {restart\_error}
    \subitem {mom\_restart}, \hyperpage{2248}
  \item {restart\_files\_exist}
    \subitem {mom\_restart}, \hyperpage{2248}
  \item {restart\_init}
    \subitem {mom\_restart}, \hyperpage{2249}
  \item {restart\_init\_end}
    \subitem {mom\_restart}, \hyperpage{2250}
  \item {restore\_state}
    \subitem {mom\_restart}, \hyperpage{2251}
  \item {rgc\_tracer}, \hyperpage{2885}
    \subitem {initialize\_rgc\_tracer}, \hyperpage{2886}
    \subitem {register\_rgc\_tracer}, \hyperpage{2888}
    \subitem {rgc\_tracer\_column\_physics}, \hyperpage{2889}
    \subitem {rgc\_tracer\_end}, \hyperpage{2891}
  \item {rgc\_tracer::rgc\_tracer\_cs}, \hyperpage{3542}
  \item {rgc\_tracer\_column\_physics}
    \subitem {rgc\_tracer}, \hyperpage{2889}
  \item {rgc\_tracer\_end}
    \subitem {rgc\_tracer}, \hyperpage{2891}
  \item {rh18\_string}
    \subitem {mom\_energetic\_pbl}, \hyperpage{1216}
  \item {rho\_function1}
    \subitem {mom\_regridding}, \hyperpage{2168}
  \item {rho\_interfaces\_col}
    \subitem {coord\_slight}, \hyperpage{220}
  \item {root\_tke\_string}
    \subitem {mom\_energetic\_pbl}, \hyperpage{1216}
  \item {rossby\_front\_2d\_initialization}, \hyperpage{2891}
    \subitem {dtdy}, \hyperpage{2892}
    \subitem {hml}, \hyperpage{2893}
    \subitem {rossby\_front\_initialize\_temperature\_salinity}, 
		\hyperpage{2893}
    \subitem {rossby\_front\_initialize\_thickness}, \hyperpage{2894}
    \subitem {rossby\_front\_initialize\_velocity}, \hyperpage{2895}
    \subitem {ypseudo}, \hyperpage{2897}
  \item {rossby\_front\_initialize\_temperature\_salinity}
    \subitem {rossby\_front\_2d\_initialization}, \hyperpage{2893}
  \item {rossby\_front\_initialize\_thickness}
    \subitem {rossby\_front\_2d\_initialization}, \hyperpage{2894}
  \item {rossby\_front\_initialize\_velocity}
    \subitem {rossby\_front\_2d\_initialization}, \hyperpage{2895}
  \item {rotate\_ale\_sponge}
    \subitem {mom\_ale\_sponge}, \hyperpage{434}
  \item {rotate\_array\_integer}
    \subitem {mom\_array\_transform}, \hyperpage{445}
    \subitem {mom\_array\_transform::rotate\_array}, \hyperpage{3545}
  \item {rotate\_array\_logical}
    \subitem {mom\_array\_transform}, \hyperpage{446}
    \subitem {mom\_array\_transform::rotate\_array}, \hyperpage{3545}
  \item {rotate\_array\_pair\_integer}
    \subitem {mom\_array\_transform}, \hyperpage{446}
    \subitem {mom\_array\_transform::rotate\_array\_pair}, 
		\hyperpage{3548}
  \item {rotate\_array\_pair\_real\_2d}
    \subitem {mom\_array\_transform}, \hyperpage{447}
    \subitem {mom\_array\_transform::rotate\_array\_pair}, 
		\hyperpage{3549}
  \item {rotate\_array\_pair\_real\_3d}
    \subitem {mom\_array\_transform}, \hyperpage{447}
    \subitem {mom\_array\_transform::rotate\_array\_pair}, 
		\hyperpage{3549}
  \item {rotate\_array\_real\_2d}
    \subitem {mom\_array\_transform}, \hyperpage{448}
    \subitem {mom\_array\_transform::rotate\_array}, \hyperpage{3546}
  \item {rotate\_array\_real\_3d}
    \subitem {mom\_array\_transform}, \hyperpage{449}
    \subitem {mom\_array\_transform::rotate\_array}, \hyperpage{3547}
  \item {rotate\_array\_real\_4d}
    \subitem {mom\_array\_transform}, \hyperpage{449}
    \subitem {mom\_array\_transform::rotate\_array}, \hyperpage{3547}
  \item {rotate\_dyngrid}
    \subitem {mom\_transcribe\_grid}, \hyperpage{2641}
  \item {rotate\_forcing}
    \subitem {mom\_forcing\_type}, \hyperpage{1447}
  \item {rotate\_hor\_index}
    \subitem {mom\_hor\_index}, \hyperpage{1518}
  \item {rotate\_mech\_forcing}
    \subitem {mom\_forcing\_type}, \hyperpage{1449}
  \item {rotate\_obc\_config}
    \subitem {mom\_open\_boundary}, \hyperpage{2056}
  \item {rotate\_obc\_init}
    \subitem {mom\_open\_boundary}, \hyperpage{2058}
  \item {rotate\_obc\_segment\_config}
    \subitem {mom\_open\_boundary}, \hyperpage{2058}
  \item {rotate\_vector\_real\_2d}
    \subitem {mom\_array\_transform}, \hyperpage{449}
    \subitem {mom\_array\_transform::rotate\_vector}, \hyperpage{3550}
  \item {rotate\_vector\_real\_3d}
    \subitem {mom\_array\_transform}, \hyperpage{450}
    \subitem {mom\_array\_transform::rotate\_vector}, \hyperpage{3551}
  \item {rotate\_vector\_real\_4d}
    \subitem {mom\_array\_transform}, \hyperpage{451}
    \subitem {mom\_array\_transform::rotate\_vector}, \hyperpage{3552}
  \item {rotated\_time\_interp\_external\_0d}
    \subitem {mom\_transform\_fms}, \hyperpage{2643}
    \subitem {mom\_transform\_fms::rotated\_time\_interp\_external}, 
		\hyperpage{3553}

  \indexspace

  \item {safe\_alloc\_allocatable\_2d}
    \subitem {mom\_safe\_alloc}, \hyperpage{2258}
    \subitem {mom\_safe\_alloc::safe\_alloc\_alloc}, \hyperpage{3555}
  \item {safe\_alloc\_allocatable\_3d}
    \subitem {mom\_safe\_alloc}, \hyperpage{2258}
    \subitem {mom\_safe\_alloc::safe\_alloc\_alloc}, \hyperpage{3555}
  \item {safe\_alloc\_allocatable\_3d\_6arg}
    \subitem {mom\_safe\_alloc}, \hyperpage{2259}
    \subitem {mom\_safe\_alloc::safe\_alloc\_alloc}, \hyperpage{3556}
  \item {safe\_alloc\_ptr\_1d}
    \subitem {mom\_safe\_alloc}, \hyperpage{2259}
    \subitem {mom\_safe\_alloc::safe\_alloc\_ptr}, \hyperpage{3557}
  \item {safe\_alloc\_ptr\_2d}
    \subitem {mom\_safe\_alloc}, \hyperpage{2260}
    \subitem {mom\_safe\_alloc::safe\_alloc\_ptr}, \hyperpage{3558}
  \item {safe\_alloc\_ptr\_2d\_2arg}
    \subitem {mom\_safe\_alloc}, \hyperpage{2260}
    \subitem {mom\_safe\_alloc::safe\_alloc\_ptr}, \hyperpage{3558}
  \item {safe\_alloc\_ptr\_3d}
    \subitem {mom\_safe\_alloc}, \hyperpage{2261}
    \subitem {mom\_safe\_alloc::safe\_alloc\_ptr}, \hyperpage{3558}
  \item {safe\_alloc\_ptr\_3d\_3arg}
    \subitem {mom\_safe\_alloc}, \hyperpage{2261}
    \subitem {mom\_safe\_alloc::safe\_alloc\_ptr}, \hyperpage{3559}
  \item {safe\_alloc\_ptr\_3d\_6arg}
    \subitem {mom\_safe\_alloc}, \hyperpage{2262}
    \subitem {mom\_safe\_alloc::safe\_alloc\_ptr}, \hyperpage{3559}
  \item {safe\_string\_copy}
    \subitem {mom\_io}, \hyperpage{1729}
  \item {save\_obs\_diff}
    \subitem {mom\_oda\_driver\_mod}, \hyperpage{1935}
  \item {save\_restart}
    \subitem {mom\_restart}, \hyperpage{2254}
  \item {scm\_cvmix\_tests}, \hyperpage{2897}
    \subitem {scm\_cvmix\_tests\_buoyancy\_forcing}, \hyperpage{2898}
    \subitem {scm\_cvmix\_tests\_surface\_forcing\_init}, 
		\hyperpage{2899}
    \subitem {scm\_cvmix\_tests\_ts\_init}, \hyperpage{2900}
    \subitem {scm\_cvmix\_tests\_wind\_forcing}, \hyperpage{2901}
  \item {scm\_cvmix\_tests::scm\_cvmix\_tests\_cs}, \hyperpage{3560}
  \item {scm\_cvmix\_tests\_buoyancy\_forcing}
    \subitem {scm\_cvmix\_tests}, \hyperpage{2898}
  \item {scm\_cvmix\_tests\_surface\_forcing\_init}
    \subitem {scm\_cvmix\_tests}, \hyperpage{2899}
  \item {scm\_cvmix\_tests\_ts\_init}
    \subitem {scm\_cvmix\_tests}, \hyperpage{2900}
  \item {scm\_cvmix\_tests\_wind\_forcing}
    \subitem {scm\_cvmix\_tests}, \hyperpage{2901}
  \item {scm\_idealized\_hurricane\_wind\_forcing}
    \subitem {idealized\_hurricane}, \hyperpage{312}
  \item {scurve}
    \subitem {basin\_builder}, \hyperpage{172}
    \subitem {mom\_surface\_forcing}, \hyperpage{2459}
    \subitem {neverworld\_initialization}, \hyperpage{2753}
  \item {scurve\_wind\_forcing}
    \subitem {mom\_surface\_forcing}, \hyperpage{2459}
  \item {seamount\_initialization}, \hyperpage{2902}
    \subitem {seamount\_initialize\_temperature\_salinity}, 
		\hyperpage{2903}
    \subitem {seamount\_initialize\_thickness}, \hyperpage{2904}
    \subitem {seamount\_initialize\_topography}, \hyperpage{2906}
  \item {seamount\_initialize\_temperature\_salinity}
    \subitem {seamount\_initialization}, \hyperpage{2903}
  \item {seamount\_initialize\_thickness}
    \subitem {seamount\_initialization}, \hyperpage{2904}
  \item {seamount\_initialize\_topography}
    \subitem {seamount\_initialization}, \hyperpage{2906}
  \item {search\_other\_column}
    \subitem {mom\_neutral\_diffusion}, \hyperpage{1903}
  \item {sech}
    \subitem {phillips\_initialization}, \hyperpage{2802}
  \item {seed\_from\_index}
    \subitem {mom\_random}, \hyperpage{2129}
  \item {seed\_from\_time}
    \subitem {mom\_random}, \hyperpage{2130}
  \item {segment\_tracer\_registry\_end}
    \subitem {mom\_open\_boundary}, \hyperpage{2060}
  \item {segment\_tracer\_registry\_init}
    \subitem {mom\_open\_boundary}, \hyperpage{2061}
  \item {set\_adapt\_params}
    \subitem {coord\_adapt}, \hyperpage{199}
  \item {set\_analysis\_time}
    \subitem {mom\_oda\_driver\_mod}, \hyperpage{1935}
  \item {set\_axes\_info}
    \subitem {mom\_diag\_mediator}, \hyperpage{984}
  \item {set\_axes\_info\_dsamp}
    \subitem {mom\_diag\_mediator}, \hyperpage{988}
  \item {set\_bbl\_tke}
    \subitem {mom\_set\_diffusivity}, \hyperpage{2281}
  \item {set\_coord\_from\_file}
    \subitem {mom\_coord\_initialization}, \hyperpage{717}
  \item {set\_coord\_from\_gprime}
    \subitem {mom\_coord\_initialization}, \hyperpage{718}
  \item {set\_coord\_from\_layer\_density}
    \subitem {mom\_coord\_initialization}, \hyperpage{719}
  \item {set\_coord\_from\_ts\_profile}
    \subitem {mom\_coord\_initialization}, \hyperpage{720}
  \item {set\_coord\_from\_ts\_range}
    \subitem {mom\_coord\_initialization}, \hyperpage{721}
  \item {set\_coord\_from\_ts\_ref}
    \subitem {mom\_coord\_initialization}, \hyperpage{722}
  \item {set\_coord\_linear}
    \subitem {mom\_coord\_initialization}, \hyperpage{723}
  \item {set\_coord\_to\_none}
    \subitem {mom\_coord\_initialization}, \hyperpage{724}
  \item {set\_density\_ratios}
    \subitem {mom\_set\_diffusivity}, \hyperpage{2283}
  \item {set\_dependent\_diagnostics}
    \subitem {mom\_diagnostics}, \hyperpage{1045}
  \item {set\_derived\_dyn\_horgrid}
    \subitem {mom\_dyn\_horgrid}, \hyperpage{1139}
  \item {set\_derived\_forcing\_fields}
    \subitem {mom\_forcing\_type}, \hyperpage{1450}
  \item {set\_derived\_metrics}
    \subitem {mom\_grid}, \hyperpage{1493}
  \item {set\_diag\_mediator\_grid}
    \subitem {mom\_diag\_mediator}, \hyperpage{991}
  \item {set\_diffusivity}
    \subitem {mom\_set\_diffusivity}, \hyperpage{2285}
  \item {set\_diffusivity\_end}
    \subitem {mom\_set\_diffusivity}, \hyperpage{2293}
  \item {set\_diffusivity\_init}
    \subitem {mom\_set\_diffusivity}, \hyperpage{2293}
  \item {set\_dtbt}
    \subitem {mom\_barotropic}, \hyperpage{513}
  \item {set\_ent\_bl}
    \subitem {mom\_entrain\_diffusive}, \hyperpage{1247}
  \item {set\_first\_direction}
    \subitem {mom\_grid}, \hyperpage{1493}
  \item {set\_forcing}
    \subitem {mom\_surface\_forcing}, \hyperpage{2460}
  \item {set\_grid\_metrics}
    \subitem {mom\_grid\_initialize}, \hyperpage{1505}
  \item {set\_grid\_metrics\_cartesian}
    \subitem {mom\_grid\_initialize}, \hyperpage{1506}
  \item {set\_grid\_metrics\_from\_mosaic}
    \subitem {mom\_grid\_initialize}, \hyperpage{1508}
  \item {set\_grid\_metrics\_mercator}
    \subitem {mom\_grid\_initialize}, \hyperpage{1511}
  \item {set\_grid\_metrics\_spherical}
    \subitem {mom\_grid\_initialize}, \hyperpage{1514}
  \item {set\_hycom\_params}
    \subitem {coord\_hycom}, \hyperpage{203}
  \item {set\_int\_tide\_input}
    \subitem {mom\_int\_tide\_input}, \hyperpage{1662}
  \item {set\_interp\_extrap}
    \subitem {regrid\_interp}, \hyperpage{2879}
  \item {set\_interp\_scheme}
    \subitem {regrid\_interp}, \hyperpage{2880}
  \item {set\_local\_bt\_cont\_types}
    \subitem {mom\_barotropic}, \hyperpage{515}
  \item {set\_masks\_for\_axes}
    \subitem {mom\_diag\_mediator}, \hyperpage{991}
  \item {set\_masks\_for\_axes\_dsamp}
    \subitem {mom\_diag\_mediator}, \hyperpage{992}
  \item {set\_merid\_bt\_cont}
    \subitem {mom\_continuity\_ppm}, \hyperpage{688}
  \item {set\_net\_mass\_forcing}
    \subitem {mom\_forcing\_type}, \hyperpage{1451}
  \item {set\_opacity}
    \subitem {mom\_opacity}, \hyperpage{1992}
  \item {set\_pbce\_bouss}
    \subitem {mom\_pressureforce\_mont}, \hyperpage{2118}
  \item {set\_pbce\_nonbouss}
    \subitem {mom\_pressureforce\_mont}, \hyperpage{2120}
  \item {set\_pen\_shortwave}
    \subitem {mom\_diabatic\_aux}, \hyperpage{855}
  \item {set\_prior\_tracer}
    \subitem {mom\_oda\_driver\_mod}, \hyperpage{1936}
  \item {set\_regrid\_max\_depths}
    \subitem {mom\_regridding}, \hyperpage{2169}
  \item {set\_regrid\_max\_thickness}
    \subitem {mom\_regridding}, \hyperpage{2169}
  \item {set\_regrid\_params}
    \subitem {mom\_regridding}, \hyperpage{2170}
  \item {set\_restart\_fields}
    \subitem {mom}, \hyperpage{377}
  \item {set\_rho\_params}
    \subitem {coord\_rho}, \hyperpage{211}
  \item {set\_rotation\_beta\_plane}
    \subitem {mom\_shared\_initialization}, \hyperpage{2347}
  \item {set\_rotation\_planetary}
    \subitem {mom\_shared\_initialization}, \hyperpage{2348}
  \item {set\_sigma\_params}
    \subitem {coord\_sigma}, \hyperpage{214}
  \item {set\_slight\_params}
    \subitem {coord\_slight}, \hyperpage{224}
  \item {set\_target\_densities}
    \subitem {mom\_regridding}, \hyperpage{2173}
  \item {set\_target\_densities\_from\_gv}
    \subitem {mom\_regridding}, \hyperpage{2173}
  \item {set\_tracer\_data}
    \subitem {mom\_open\_boundary}, \hyperpage{2061}
  \item {set\_u\_at\_v}
    \subitem {mom\_set\_visc}, \hyperpage{2298}
  \item {set\_up\_ale\_sponge\_field\_fixed}
    \subitem {mom\_ale\_sponge}, \hyperpage{436}
    \subitem {mom\_ale\_sponge::set\_up\_ale\_sponge\_field}, 
		\hyperpage{3567}
  \item {set\_up\_ale\_sponge\_field\_varying}
    \subitem {mom\_ale\_sponge}, \hyperpage{437}
    \subitem {mom\_ale\_sponge::set\_up\_ale\_sponge\_field}, 
		\hyperpage{3568}
  \item {set\_up\_ale\_sponge\_vel\_field\_fixed}
    \subitem {mom\_ale\_sponge}, \hyperpage{438}
    \subitem {mom\_ale\_sponge::set\_up\_ale\_sponge\_vel\_field}, 
		\hyperpage{3570}
  \item {set\_up\_ale\_sponge\_vel\_field\_varying}
    \subitem {mom\_ale\_sponge}, \hyperpage{439}
    \subitem {mom\_ale\_sponge::set\_up\_ale\_sponge\_vel\_field}, 
		\hyperpage{3571}
  \item {set\_up\_bt\_obc}
    \subitem {mom\_barotropic}, \hyperpage{517}
  \item {set\_up\_sponge\_field}
    \subitem {mom\_sponge}, \hyperpage{2368}
  \item {set\_up\_sponge\_ml\_density}
    \subitem {mom\_sponge}, \hyperpage{2369}
  \item {set\_v\_at\_u}
    \subitem {mom\_set\_visc}, \hyperpage{2299}
  \item {set\_velocity\_depth\_max}
    \subitem {mom\_shared\_initialization}, \hyperpage{2349}
    \subitem {mom\_state\_initialization}, \hyperpage{2412}
  \item {set\_velocity\_depth\_min}
    \subitem {mom\_shared\_initialization}, \hyperpage{2349}
    \subitem {mom\_state\_initialization}, \hyperpage{2412}
  \item {set\_visc\_end}
    \subitem {mom\_set\_visc}, \hyperpage{2300}
  \item {set\_visc\_init}
    \subitem {mom\_set\_visc}, \hyperpage{2301}
  \item {set\_visc\_register\_restarts}
    \subitem {mom\_set\_visc}, \hyperpage{2306}
  \item {set\_viscous\_bbl}
    \subitem {mom\_set\_visc}, \hyperpage{2307}
  \item {set\_viscous\_ml}
    \subitem {mom\_set\_visc}, \hyperpage{2320}
  \item {set\_zlike\_params}
    \subitem {coord\_zlike}, \hyperpage{228}
  \item {set\_zonal\_bt\_cont}
    \subitem {mom\_continuity\_ppm}, \hyperpage{691}
  \item {setcoordinateresolution}
    \subitem {mom\_regridding}, \hyperpage{2174}
  \item {setreconstructiontype}
    \subitem {mom\_remapping}, \hyperpage{2222}
  \item {setup\_obc\_tracer\_reservoirs}
    \subitem {mom\_open\_boundary}, \hyperpage{2063}
  \item {setup\_segment\_indices}
    \subitem {mom\_open\_boundary}, \hyperpage{2063}
  \item {setup\_tidal\_diagnostics}
    \subitem {mom\_tidal\_mixing}, \hyperpage{2536}
  \item {setup\_u\_point\_obc}
    \subitem {mom\_open\_boundary}, \hyperpage{2065}
  \item {setup\_v\_point\_obc}
    \subitem {mom\_open\_boundary}, \hyperpage{2067}
  \item {setverticalgridaxes}
    \subitem {mom\_verticalgrid}, \hyperpage{2682}
  \item {shelf\_advance\_front}
    \subitem {mom\_ice\_shelf\_dynamics}, \hyperpage{1643}
  \item {shelf\_calc\_flux}
    \subitem {mom\_ice\_shelf}, \hyperpage{1586}
  \item {shelfwave\_initialization}, \hyperpage{2907}
    \subitem {register\_shelfwave\_obc}, \hyperpage{2907}
    \subitem {shelfwave\_initialize\_topography}, \hyperpage{2908}
    \subitem {shelfwave\_obc\_end}, \hyperpage{2909}
    \subitem {shelfwave\_set\_obc\_data}, \hyperpage{2909}
  \item {shelfwave\_initialization::shelfwave\_obc\_cs}, 
		\hyperpage{3576}
  \item {shelfwave\_initialize\_topography}
    \subitem {shelfwave\_initialization}, \hyperpage{2908}
  \item {shelfwave\_obc\_end}
    \subitem {shelfwave\_initialization}, \hyperpage{2909}
  \item {shelfwave\_set\_obc\_data}
    \subitem {shelfwave\_initialization}, \hyperpage{2909}
  \item {signum}
    \subitem {mom\_neutral\_diffusion}, \hyperpage{1904}
  \item {simplifywhitespace}
    \subitem {mom\_file\_parser}, \hyperpage{1391}
  \item {slasher}
    \subitem {mom\_string\_functions}, \hyperpage{2423}
  \item {slope\_limiter}
    \subitem {mom\_ice\_shelf\_dynamics}, \hyperpage{1646}
  \item {sloshing\_initialization}, \hyperpage{2910}
    \subitem {sloshing\_initialize\_temperature\_salinity}, 
		\hyperpage{2911}
    \subitem {sloshing\_initialize\_thickness}, \hyperpage{2912}
    \subitem {sloshing\_initialize\_topography}, \hyperpage{2914}
  \item {sloshing\_initialize\_temperature\_salinity}
    \subitem {sloshing\_initialization}, \hyperpage{2911}
  \item {sloshing\_initialize\_thickness}
    \subitem {sloshing\_initialization}, \hyperpage{2912}
  \item {sloshing\_initialize\_topography}
    \subitem {sloshing\_initialization}, \hyperpage{2914}
  \item {smooth\_gme}
    \subitem {mom\_hor\_visc}, \hyperpage{1550}
  \item {smooth\_heights}
    \subitem {mom\_horizontal\_regridding}, \hyperpage{1567}
  \item {smoothed\_drdt\_drds}
    \subitem {mom\_full\_convection}, \hyperpage{1457}
  \item {soliton\_initialization}, \hyperpage{2915}
    \subitem {soliton\_initialize\_thickness}, \hyperpage{2915}
    \subitem {soliton\_initialize\_velocity}, \hyperpage{2916}
  \item {soliton\_initialize\_thickness}
    \subitem {soliton\_initialization}, \hyperpage{2915}
  \item {soliton\_initialize\_velocity}
    \subitem {soliton\_initialization}, \hyperpage{2916}
  \item {solo\_step\_ice\_shelf}
    \subitem {mom\_ice\_shelf}, \hyperpage{1593}
  \item {solve\_diag\_dominant\_tridiag}
    \subitem {regrid\_edge\_values}, \hyperpage{2868}
    \subitem {regrid\_solvers}, \hyperpage{2882}
  \item {solve\_linear\_system}
    \subitem {regrid\_solvers}, \hyperpage{2883}
  \item {solve\_tridiagonal\_system}
    \subitem {regrid\_solvers}, \hyperpage{2884}
  \item {sort\_ml}
    \subitem {mom\_bulk\_mixed\_layer}, \hyperpage{591}
  \item {spike}
    \subitem {neverworld\_initialization}, \hyperpage{2753}
  \item {sponge\_end}
    \subitem {mom\_sponge}, \hyperpage{2370}
  \item {start\_group\_pass}
    \subitem {mom\_domains}, \hyperpage{1134}
  \item {start\_index}
    \subitem {mom\_offline\_main::offline\_transport\_cs}, 
		\hyperpage{3438}
  \item {state\_dependent\_char}
    \subitem {regrid\_consts}, \hyperpage{2846}
    \subitem {regrid\_consts::state\_dependent}, \hyperpage{3582}
  \item {state\_dependent\_int}
    \subitem {regrid\_consts}, \hyperpage{2847}
    \subitem {regrid\_consts::state\_dependent}, \hyperpage{3582}
  \item {staticwaves}
    \subitem {mom\_wave\_interface}, \hyperpage{2709}
  \item {step\_forward\_meke}
    \subitem {mom\_meke}, \hyperpage{1831}
  \item {step\_mom}
    \subitem {mom}, \hyperpage{378}
  \item {step\_mom\_dyn\_split\_rk2}
    \subitem {mom\_dynamics\_split\_rk2}, \hyperpage{1148}
  \item {step\_mom\_dyn\_unsplit}
    \subitem {mom\_dynamics\_unsplit}, \hyperpage{1164}
  \item {step\_mom\_dyn\_unsplit\_rk2}
    \subitem {mom\_dynamics\_unsplit\_rk2}, \hyperpage{1174}
  \item {step\_mom\_dynamics}
    \subitem {mom}, \hyperpage{386}
  \item {step\_mom\_thermo}
    \subitem {mom}, \hyperpage{389}
  \item {step\_mom\_tracer\_dyn}
    \subitem {mom}, \hyperpage{392}
  \item {step\_offline}
    \subitem {mom}, \hyperpage{393}
  \item {stokesmixing}
    \subitem {mom\_wave\_interface}, \hyperpage{2698}
  \item {store\_stocks}
    \subitem {mom\_tracer\_flow\_control}, \hyperpage{2581}
  \item {streamfn\_solver}
    \subitem {mom\_thickness\_diffuse}, \hyperpage{2488}
  \item {string\_functions\_unit\_tests}
    \subitem {mom\_string\_functions}, \hyperpage{2423}
  \item {strip\_quotes}
    \subitem {mom\_file\_parser}, \hyperpage{1392}
  \item {sum\_en}
    \subitem {mom\_internal\_tides}, \hyperpage{1705}
  \item {sumswoverbands}
    \subitem {mom\_opacity}, \hyperpage{1995}
  \item {supercritical\_initialization}, \hyperpage{2917}
    \subitem {supercritical\_set\_obc\_data}, \hyperpage{2917}
  \item {supercritical\_set\_obc\_data}
    \subitem {supercritical\_initialization}, \hyperpage{2917}
  \item {surface\_bands\_by\_data\_override}
    \subitem {mom\_wave\_interface}, \hyperpage{2699}
  \item {surface\_boundary\_scheme}
    \subitem {mom\_lateral\_boundary\_diffusion::lateral\_boundary\_diffusion\_cs}, 
		\hyperpage{3328}
  \item {surface\_forcing\_end}
    \subitem {mom\_surface\_forcing}, \hyperpage{2462}
  \item {surface\_forcing\_init}
    \subitem {mom\_surface\_forcing}, \hyperpage{2463}
  \item {surfbandfilename}
    \subitem {mom\_wave\_interface}, \hyperpage{2709}
  \item {surfbands}
    \subitem {mom\_wave\_interface}, \hyperpage{2710}
  \item {sw\_pen\_frac\_morel}
    \subitem {mom\_opacity}, \hyperpage{1997}
  \item {swap}
    \subitem {mom\_barotropic}, \hyperpage{521}
  \item {SYMMETRIC\_MEMORY\_}
    \subitem {MOM\_memory.h}, \hyperpage{3684}
  \item {SZI\_}
    \subitem {MOM\_memory\_macros.h}, \hyperpage{3687}

  \indexspace

  \item {tdma6}
    \subitem {mom\_wave\_speed}, \hyperpage{2712}
  \item {teleport}
    \subitem {mom\_internal\_tides}, \hyperpage{1705}
  \item {test\_answer}
    \subitem {mom\_remapping}, \hyperpage{2222}
  \item {test\_boundary\_k\_range}
    \subitem {mom\_lateral\_boundary\_diffusion}, \hyperpage{1789}
  \item {test\_data1d}
    \subitem {mom\_neutral\_diffusion}, \hyperpage{1905}
  \item {test\_data1di}
    \subitem {mom\_neutral\_diffusion}, \hyperpage{1905}
  \item {test\_fn}
    \subitem {mom\_random}, \hyperpage{2130}
  \item {test\_fv\_diff}
    \subitem {mom\_neutral\_diffusion}, \hyperpage{1906}
  \item {test\_fvlsq\_slope}
    \subitem {mom\_neutral\_diffusion}, \hyperpage{1907}
  \item {test\_ifndp}
    \subitem {mom\_neutral\_diffusion}, \hyperpage{1908}
  \item {test\_interp}
    \subitem {mom\_diag\_vkernels}, \hyperpage{1013}
  \item {test\_layer\_fluxes}
    \subitem {mom\_lateral\_boundary\_diffusion}, \hyperpage{1790}
  \item {test\_line}
    \subitem {regrid\_edge\_values}, \hyperpage{2869}
  \item {test\_nsp}
    \subitem {mom\_neutral\_diffusion}, \hyperpage{1909}
  \item {test\_reintegrate}
    \subitem {mom\_diag\_vkernels}, \hyperpage{1014}
  \item {test\_rnp}
    \subitem {mom\_neutral\_diffusion}, \hyperpage{1910}
  \item {testformattedfloatisreal}
    \subitem {mom\_document}, \hyperpage{1091}
  \item {testprof}
    \subitem {mom\_wave\_interface}, \hyperpage{2710}
  \item {thickness\_diffuse}
    \subitem {mom\_thickness\_diffuse}, \hyperpage{2489}
  \item {thickness\_diffuse\_end}
    \subitem {mom\_thickness\_diffuse}, \hyperpage{2495}
  \item {thickness\_diffuse\_full}
    \subitem {mom\_thickness\_diffuse}, \hyperpage{2496}
  \item {thickness\_diffuse\_get\_kh}
    \subitem {mom\_thickness\_diffuse}, \hyperpage{2508}
  \item {thickness\_diffuse\_init}
    \subitem {mom\_thickness\_diffuse}, \hyperpage{2508}
  \item {tidal\_bay\_initialization}, \hyperpage{2918}
    \subitem {register\_tidal\_bay\_obc}, \hyperpage{2919}
    \subitem {tidal\_bay\_obc\_end}, \hyperpage{2919}
    \subitem {tidal\_bay\_set\_obc\_data}, \hyperpage{2919}
  \item {tidal\_bay\_initialization::tidal\_bay\_obc\_cs}, 
		\hyperpage{3605}
  \item {tidal\_bay\_obc\_end}
    \subitem {tidal\_bay\_initialization}, \hyperpage{2919}
  \item {tidal\_bay\_set\_obc\_data}
    \subitem {tidal\_bay\_initialization}, \hyperpage{2919}
  \item {tidal\_forcing}, \hyperpage{2921}
  \item {tidal\_forcing\_end}
    \subitem {mom\_tidal\_forcing}, \hyperpage{2515}
  \item {tidal\_forcing\_init}
    \subitem {mom\_tidal\_forcing}, \hyperpage{2515}
  \item {tidal\_forcing\_sensitivity}
    \subitem {mom\_tidal\_forcing}, \hyperpage{2519}
  \item {tidal\_mixing\_end}
    \subitem {mom\_tidal\_mixing}, \hyperpage{2537}
  \item {tidal\_mixing\_h\_amp}
    \subitem {mom\_tidal\_mixing}, \hyperpage{2537}
  \item {tidal\_mixing\_init}
    \subitem {mom\_tidal\_mixing}, \hyperpage{2538}
  \item {time\_string}
    \subitem {mom\_document}, \hyperpage{1091}
  \item {totalstuff}
    \subitem {mom\_debugging}, \hyperpage{801}
  \item {totaltands}
    \subitem {mom\_debugging}, \hyperpage{801}
  \item {tp\_stkx0}
    \subitem {mom\_wave\_interface}, \hyperpage{2710}
  \item {tp\_stky0}
    \subitem {mom\_wave\_interface}, \hyperpage{2710}
  \item {tp\_wvl}
    \subitem {mom\_wave\_interface}, \hyperpage{2710}
  \item {tracer\_advect\_end}
    \subitem {mom\_tracer\_advect}, \hyperpage{2561}
  \item {tracer\_advect\_init}
    \subitem {mom\_tracer\_advect}, \hyperpage{2561}
  \item {tracer\_column\_physics}
    \subitem {user\_tracer\_example}, \hyperpage{2944}
  \item {tracer\_epipycnal\_ml\_diff}
    \subitem {mom\_tracer\_hor\_diff}, \hyperpage{2585}
  \item {tracer\_flow\_control\_end}
    \subitem {mom\_tracer\_flow\_control}, \hyperpage{2582}
  \item {tracer\_flow\_control\_init}
    \subitem {mom\_tracer\_flow\_control}, \hyperpage{2582}
  \item {tracer\_hor\_diff\_end}
    \subitem {mom\_tracer\_hor\_diff}, \hyperpage{2596}
  \item {tracer\_hor\_diff\_init}
    \subitem {mom\_tracer\_hor\_diff}, \hyperpage{2596}
  \item {tracer\_hordiff}
    \subitem {mom\_tracer\_hor\_diff}, \hyperpage{2598}
  \item {tracer\_name\_lookup}
    \subitem {mom\_tracer\_registry}, \hyperpage{2623}
  \item {tracer\_registry\_end}
    \subitem {mom\_tracer\_registry}, \hyperpage{2623}
  \item {tracer\_registry\_init}
    \subitem {mom\_tracer\_registry}, \hyperpage{2623}
  \item {tracer\_vertdiff}
    \subitem {mom\_tracer\_diabatic}, \hyperpage{2566}
  \item {tracer\_z\_init}
    \subitem {mom\_tracer\_z\_init}, \hyperpage{2631}
  \item {tracer\_z\_init\_array}
    \subitem {mom\_tracer\_z\_init}, \hyperpage{2634}
  \item {tridiag\_det}
    \subitem {mom\_wave\_speed}, \hyperpage{2713}
  \item {tridiag\_solver}
    \subitem {mom\_wave\_structure}, \hyperpage{2731}
  \item {tridiagts}
    \subitem {mom\_diabatic\_aux}, \hyperpage{857}
  \item {trim\_for\_ice}
    \subitem {mom\_state\_initialization}, \hyperpage{2412}
  \item {ts\_plm\_edge\_values}
    \subitem {mom\_ale}, \hyperpage{420}
  \item {ts\_ppm\_edge\_values}
    \subitem {mom\_ale}, \hyperpage{421}

  \indexspace

  \item {uhbt\_to\_ubt}
    \subitem {mom\_barotropic}, \hyperpage{521}
  \item {undef\_string}
    \subitem {mom\_document}, \hyperpage{1092}
  \item {uniformresolution}
    \subitem {mom\_regridding}, \hyperpage{2174}
  \item {unit\_scaling\_end}
    \subitem {mom\_unit\_scaling}, \hyperpage{2644}
  \item {unit\_scaling\_init}
    \subitem {mom\_unit\_scaling}, \hyperpage{2645}
  \item {unit\_tests}
    \subitem {mom\_unit\_tests}, \hyperpage{2646}
  \item {update\_ale\_sponge\_field}
    \subitem {mom\_ale\_sponge}, \hyperpage{441}
  \item {update\_h\_horizontal\_flux}
    \subitem {mom\_offline\_aux}, \hyperpage{1946}
  \item {update\_h\_vertical\_flux}
    \subitem {mom\_offline\_aux}, \hyperpage{1947}
  \item {update\_ice\_shelf}
    \subitem {mom\_ice\_shelf\_dynamics}, \hyperpage{1646}
  \item {update\_obc\_data}
    \subitem {mom\_boundary\_update}, \hyperpage{534}
  \item {update\_obc\_ramp}
    \subitem {mom\_open\_boundary}, \hyperpage{2070}
  \item {update\_obc\_segment\_data}
    \subitem {mom\_open\_boundary}, \hyperpage{2070}
  \item {update\_ocean\_model}
    \subitem {ocean\_model\_mod}, \hyperpage{2769}
  \item {update\_od\_ffrac}
    \subitem {mom\_ice\_shelf\_dynamics}, \hyperpage{1648}
  \item {update\_od\_ffrac\_uncoupled}
    \subitem {mom\_ice\_shelf\_dynamics}, \hyperpage{1648}
  \item {update\_offline\_fields}
    \subitem {mom\_offline\_main}, \hyperpage{1976}
  \item {update\_offline\_from\_arrays}
    \subitem {mom\_offline\_aux}, \hyperpage{1948}
  \item {update\_offline\_from\_files}
    \subitem {mom\_offline\_aux}, \hyperpage{1949}
  \item {update\_segment\_tracer\_reservoirs}
    \subitem {mom\_open\_boundary}, \hyperpage{2079}
  \item {update\_shelf\_mass}
    \subitem {mom\_ice\_shelf}, \hyperpage{1594}
  \item {update\_stokes\_drift}
    \subitem {mom\_wave\_interface}, \hyperpage{2701}
  \item {update\_surface\_waves}
    \subitem {mom\_wave\_interface}, \hyperpage{2705}
  \item {update\_velocity\_masks}
    \subitem {mom\_ice\_shelf\_dynamics}, \hyperpage{1649}
  \item {updatecfltruncationvalue}
    \subitem {mom\_vert\_friction}, \hyperpage{2657}
  \item {uppercase}
    \subitem {mom\_string\_functions}, \hyperpage{2424}
  \item {use\_fixed\_mstar}
    \subitem {mom\_energetic\_pbl}, \hyperpage{1216}
  \item {user\_alter\_forcing}
    \subitem {user\_revise\_forcing}, \hyperpage{2934}
  \item {user\_buoyancy\_forcing}
    \subitem {user\_surface\_forcing}, \hyperpage{2939}
  \item {user\_change\_diff}
    \subitem {user\_change\_diffusivity}, \hyperpage{2922}
  \item {user\_change\_diff\_end}
    \subitem {user\_change\_diffusivity}, \hyperpage{2924}
  \item {user\_change\_diff\_init}
    \subitem {user\_change\_diffusivity}, \hyperpage{2924}
  \item {user\_change\_diffusivity}, \hyperpage{2921}
    \subitem {range\_ok}, \hyperpage{2921}
    \subitem {user\_change\_diff}, \hyperpage{2922}
    \subitem {user\_change\_diff\_end}, \hyperpage{2924}
    \subitem {user\_change\_diff\_init}, \hyperpage{2924}
    \subitem {val\_weights}, \hyperpage{2925}
  \item {user\_change\_diffusivity::user\_change\_diff\_cs}, 
		\hyperpage{3636}
  \item {user\_init\_ice\_thickness}
    \subitem {user\_shelf\_init}, \hyperpage{2935}
  \item {user\_init\_temperature\_salinity}
    \subitem {user\_initialization}, \hyperpage{2927}
  \item {user\_initialization}, \hyperpage{2926}
    \subitem {first\_call}, \hyperpage{2933}
    \subitem {user\_init\_temperature\_salinity}, \hyperpage{2927}
    \subitem {user\_initialize\_sponges}, \hyperpage{2928}
    \subitem {user\_initialize\_thickness}, \hyperpage{2929}
    \subitem {user\_initialize\_topography}, \hyperpage{2929}
    \subitem {user\_initialize\_velocity}, \hyperpage{2930}
    \subitem {user\_set\_coord}, \hyperpage{2931}
    \subitem {user\_set\_obc\_data}, \hyperpage{2931}
    \subitem {user\_set\_rotation}, \hyperpage{2932}
    \subitem {write\_user\_log}, \hyperpage{2932}
  \item {user\_initialize\_shelf\_mass}
    \subitem {user\_shelf\_init}, \hyperpage{2936}
  \item {user\_initialize\_sponges}
    \subitem {user\_initialization}, \hyperpage{2928}
  \item {user\_initialize\_thickness}
    \subitem {user\_initialization}, \hyperpage{2929}
  \item {user\_initialize\_topography}
    \subitem {user\_initialization}, \hyperpage{2929}
  \item {user\_initialize\_tracer}
    \subitem {user\_tracer\_example}, \hyperpage{2946}
  \item {user\_initialize\_velocity}
    \subitem {user\_initialization}, \hyperpage{2930}
  \item {user\_register\_tracer\_example}
    \subitem {user\_tracer\_example}, \hyperpage{2948}
  \item {user\_revise\_forcing}, \hyperpage{2933}
    \subitem {user\_alter\_forcing}, \hyperpage{2934}
    \subitem {user\_revise\_forcing\_init}, \hyperpage{2934}
  \item {user\_revise\_forcing::user\_revise\_forcing\_cs}, 
		\hyperpage{3638}
  \item {user\_revise\_forcing\_init}
    \subitem {user\_revise\_forcing}, \hyperpage{2934}
  \item {user\_set\_coord}
    \subitem {user\_initialization}, \hyperpage{2931}
  \item {user\_set\_obc\_data}
    \subitem {user\_initialization}, \hyperpage{2931}
  \item {user\_set\_rotation}
    \subitem {user\_initialization}, \hyperpage{2932}
  \item {user\_shelf\_init}, \hyperpage{2935}
    \subitem {user\_init\_ice\_thickness}, \hyperpage{2935}
    \subitem {user\_initialize\_shelf\_mass}, \hyperpage{2936}
    \subitem {user\_update\_shelf\_mass}, \hyperpage{2937}
    \subitem {write\_user\_log}, \hyperpage{2938}
  \item {user\_shelf\_init::user\_ice\_shelf\_cs}, \hyperpage{3637}
  \item {user\_surface\_forcing}, \hyperpage{2939}
    \subitem {user\_buoyancy\_forcing}, \hyperpage{2939}
    \subitem {user\_surface\_forcing\_init}, \hyperpage{2941}
    \subitem {user\_wind\_forcing}, \hyperpage{2943}
  \item {user\_surface\_forcing::user\_surface\_forcing\_cs}, 
		\hyperpage{3639}
  \item {user\_surface\_forcing\_init}
    \subitem {user\_surface\_forcing}, \hyperpage{2941}
  \item {user\_tracer\_example}, \hyperpage{2944}
    \subitem {tracer\_column\_physics}, \hyperpage{2944}
    \subitem {user\_initialize\_tracer}, \hyperpage{2946}
    \subitem {user\_register\_tracer\_example}, \hyperpage{2948}
    \subitem {user\_tracer\_example\_end}, \hyperpage{2950}
    \subitem {user\_tracer\_stock}, \hyperpage{2950}
    \subitem {user\_tracer\_surface\_state}, \hyperpage{2951}
  \item {user\_tracer\_example::user\_tracer\_example\_cs}, 
		\hyperpage{3641}
  \item {user\_tracer\_example\_end}
    \subitem {user\_tracer\_example}, \hyperpage{2950}
  \item {user\_tracer\_stock}
    \subitem {user\_tracer\_example}, \hyperpage{2950}
  \item {user\_tracer\_surface\_state}
    \subitem {user\_tracer\_example}, \hyperpage{2951}
  \item {user\_update\_shelf\_mass}
    \subitem {user\_shelf\_init}, \hyperpage{2937}
  \item {user\_wind\_forcing}
    \subitem {user\_surface\_forcing}, \hyperpage{2943}
  \item {ust\_2\_u10\_coare3p5}
    \subitem {mom\_wave\_interface}, \hyperpage{2705}

  \indexspace

  \item {val\_weights}
    \subitem {user\_change\_diffusivity}, \hyperpage{2925}
  \item {var\_desc}
    \subitem {mom\_io}, \hyperpage{1730}
  \item {varmix\_init}
    \subitem {mom\_lateral\_mixing\_coeffs}, \hyperpage{1805}
  \item {vert\_fill\_ts}
    \subitem {mom\_isopycnal\_slopes}, \hyperpage{1736}
  \item {verticalgridend}
    \subitem {mom\_verticalgrid}, \hyperpage{2683}
  \item {verticalgridinit}
    \subitem {mom\_verticalgrid}, \hyperpage{2683}
  \item {vertically\_interpolate\_diag\_field}
    \subitem {mom\_diag\_remap}, \hyperpage{1005}
  \item {vertically\_reintegrate\_diag\_field}
    \subitem {mom\_diag\_remap}, \hyperpage{1006}
  \item {vertvisc}
    \subitem {mom\_vert\_friction}, \hyperpage{2658}
  \item {vertvisc\_coef}
    \subitem {mom\_vert\_friction}, \hyperpage{2663}
  \item {vertvisc\_end}
    \subitem {mom\_vert\_friction}, \hyperpage{2670}
  \item {vertvisc\_init}
    \subitem {mom\_vert\_friction}, \hyperpage{2670}
  \item {vertvisc\_limit\_vel}
    \subitem {mom\_vert\_friction}, \hyperpage{2674}
  \item {vertvisc\_remnant}
    \subitem {mom\_vert\_friction}, \hyperpage{2677}
  \item {vhbt\_to\_vbt}
    \subitem {mom\_barotropic}, \hyperpage{523}

  \indexspace

  \item {wave\_speed}
    \subitem {mom\_wave\_speed}, \hyperpage{2714}
  \item {wave\_speed\_init}
    \subitem {mom\_wave\_speed}, \hyperpage{2721}
  \item {wave\_speed\_set\_param}
    \subitem {mom\_wave\_speed}, \hyperpage{2723}
  \item {wave\_speeds}
    \subitem {mom\_wave\_speed}, \hyperpage{2724}
  \item {wave\_structure}
    \subitem {mom\_wave\_structure}, \hyperpage{2733}
  \item {wave\_structure\_init}
    \subitem {mom\_wave\_structure}, \hyperpage{2740}
  \item {waveage}
    \subitem {mom\_wave\_interface}, \hyperpage{2710}
  \item {waveagepeakfreq}
    \subitem {mom\_wave\_interface}, \hyperpage{2711}
  \item {wavemethod}
    \subitem {mom\_wave\_interface}, \hyperpage{2711}
  \item {waves\_end}
    \subitem {mom\_wave\_interface}, \hyperpage{2706}
  \item {wavewind}
    \subitem {mom\_wave\_interface}, \hyperpage{2711}
  \item {wind\_forcing\_1gyre}
    \subitem {mom\_surface\_forcing}, \hyperpage{2469}
  \item {wind\_forcing\_2gyre}
    \subitem {mom\_surface\_forcing}, \hyperpage{2469}
  \item {wind\_forcing\_by\_data\_override}
    \subitem {mom\_surface\_forcing}, \hyperpage{2470}
  \item {wind\_forcing\_const}
    \subitem {mom\_surface\_forcing}, \hyperpage{2471}
  \item {wind\_forcing\_from\_file}
    \subitem {mom\_surface\_forcing}, \hyperpage{2472}
  \item {wind\_forcing\_gyres}
    \subitem {mom\_surface\_forcing}, \hyperpage{2475}
  \item {write\_bfb\_log}
    \subitem {bfb\_initialization}, \hyperpage{180}
  \item {write\_cputime}
    \subitem {mom\_write\_cputime}, \hyperpage{2743}
  \item {write\_cputime\_start\_clock}
    \subitem {mom\_write\_cputime}, \hyperpage{2744}
  \item {write\_depth\_list}
    \subitem {mom\_sum\_output}, \hyperpage{2435}
  \item {write\_energy}
    \subitem {mom\_sum\_output}, \hyperpage{2437}
  \item {write\_ocean\_geometry\_file}
    \subitem {mom\_shared\_initialization}, \hyperpage{2350}
  \item {write\_ocean\_obs\_mod}, \hyperpage{2952}
    \subitem {close\_profile\_file}, \hyperpage{2952}
    \subitem {open\_profile\_file}, \hyperpage{2953}
    \subitem {write\_profile}, \hyperpage{2953}
  \item {write\_profile}
    \subitem {write\_ocean\_obs\_mod}, \hyperpage{2953}
  \item {write\_static\_fields}
    \subitem {mom\_diagnostics}, \hyperpage{1046}
  \item {write\_u\_accel}
    \subitem {mom\_pointaccel}, \hyperpage{2082}
  \item {write\_user\_log}
    \subitem {user\_initialization}, \hyperpage{2932}
    \subitem {user\_shelf\_init}, \hyperpage{2938}
  \item {write\_v\_accel}
    \subitem {mom\_pointaccel}, \hyperpage{2087}
  \item {write\_vertgrid\_file}
    \subitem {mom\_coord\_initialization}, \hyperpage{725}
  \item {writemessageanddesc}
    \subitem {mom\_document}, \hyperpage{1092}

  \indexspace

  \item {ypseudo}
    \subitem {rossby\_front\_2d\_initialization}, \hyperpage{2897}

  \indexspace

  \item {zchksum}
    \subitem {mom\_checksums}, \hyperpage{639}
  \item {zonal\_face\_thickness}
    \subitem {mom\_continuity\_ppm}, \hyperpage{694}
  \item {zonal\_flux\_adjust}
    \subitem {mom\_continuity\_ppm}, \hyperpage{696}
  \item {zonal\_flux\_en}
    \subitem {mom\_internal\_tides}, \hyperpage{1707}
  \item {zonal\_flux\_layer}
    \subitem {mom\_continuity\_ppm}, \hyperpage{699}
  \item {zonal\_mass\_flux}
    \subitem {mom\_continuity\_ppm}, \hyperpage{701}

\end{theindex}