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  <compounddef id="namespacebenchmark__initialization" kind="namespace" language="Fortran">
    <compoundname>benchmark_initialization</compoundname>
      <sectiondef kind="func">
      <memberdef kind="function" id="namespacebenchmark__initialization_1aa9f5b306237bd4938a117fe871a93ed7" prot="public" static="no" const="no" explicit="no" inline="no" virt="non-virtual">
        <type>subroutine, public</type>
        <definition>subroutine, public benchmark_initialization::benchmark_initialize_topography</definition>
        <argsstring>(D, G, param_file, max_depth, US)</argsstring>
        <name>benchmark_initialize_topography</name>
        <param>
          <type>D</type>
          <defname>D</defname>
        </param>
        <param>
          <type>G</type>
          <defname>G</defname>
        </param>
        <param>
          <type>param_file</type>
          <defname>param_file</defname>
        </param>
        <param>
          <type>max_depth</type>
          <defname>max_depth</defname>
        </param>
        <param>
          <type>US</type>
          <defname>US</defname>
        </param>
        <briefdescription>
<para>This subroutine sets up the benchmark test case topography. </para>
        </briefdescription>
        <detaileddescription>
<para><parameterlist kind="param"><parameteritem>
<parameternamelist>
<parametername direction="in">g</parametername>
</parameternamelist>
<parameterdescription>
<para>The dynamic horizontal grid type </para>
</parameterdescription>
</parameteritem>
<parameteritem>
<parameternamelist>
<parametername direction="out">d</parametername>
</parameternamelist>
<parameterdescription>
<para>Ocean bottom depth in m or [Z ~&gt; m] if US is present </para>
</parameterdescription>
</parameteritem>
<parameteritem>
<parameternamelist>
<parametername direction="in">param_file</parametername>
</parameternamelist>
<parameterdescription>
<para>Parameter file structure </para>
</parameterdescription>
</parameteritem>
<parameteritem>
<parameternamelist>
<parametername direction="in">max_depth</parametername>
</parameternamelist>
<parameterdescription>
<para>Maximum model depth in the units of D </para>
</parameterdescription>
</parameteritem>
<parameteritem>
<parameternamelist>
<parametername direction="in">us</parametername>
</parameternamelist>
<parameterdescription>
<para>A dimensional unit scaling type </para>
</parameterdescription>
</parameteritem>
</parameterlist>
</para>
        </detaileddescription>
        <inbodydescription>
        </inbodydescription>
        <location file="/home/cermak/src/MOM6.devrob/src/user/benchmark_initialization.F90" line="34" column="1" bodyfile="/home/cermak/src/MOM6.devrob/src/user/benchmark_initialization.F90" bodystart="35" bodyend="78"/>
        <references refid="namespacemom__error__handler_1a1c462df7b61f1296407b4af51dfeceab" compoundref="MOM__error__handler_8F90" startline="53" endline="66">mom_error_handler::mom_mesg</references>
        <referencedby refid="namespacemom__fixed__initialization_1ae980c841ada6296d07df08442398e87b" compoundref="MOM__fixed__initialization_8F90" startline="175" endline="257">mom_fixed_initialization::mom_initialize_topography</referencedby>
      </memberdef>
      <memberdef kind="function" id="namespacebenchmark__initialization_1a47e8f35398b09d4d89245097b0eecb6f" prot="public" static="no" const="no" explicit="no" inline="no" virt="non-virtual">
        <type>subroutine, public</type>
        <definition>subroutine, public benchmark_initialization::benchmark_initialize_thickness</definition>
        <argsstring>(h, G, GV, US, param_file, eqn_of_state, P_Ref, just_read_params)</argsstring>
        <name>benchmark_initialize_thickness</name>
        <param>
          <type>h</type>
          <defname>h</defname>
        </param>
        <param>
          <type>G</type>
          <defname>G</defname>
        </param>
        <param>
          <type>GV</type>
          <defname>GV</defname>
        </param>
        <param>
          <type>US</type>
          <defname>US</defname>
        </param>
        <param>
          <type>param_file</type>
          <defname>param_file</defname>
        </param>
        <param>
          <type>eqn_of_state</type>
          <defname>eqn_of_state</defname>
        </param>
        <param>
          <type>P_Ref</type>
          <defname>P_Ref</defname>
        </param>
        <param>
          <type>just_read_params</type>
          <defname>just_read_params</defname>
        </param>
        <briefdescription>
<para>Initializes layer thicknesses for the benchmark test case, by finding the depths of interfaces in a specified latitude-dependent temperature profile with an exponentially decaying thermocline on top of a linear stratification. </para>
        </briefdescription>
        <detaileddescription>
<para><parameterlist kind="param"><parameteritem>
<parameternamelist>
<parametername direction="in">g</parametername>
</parameternamelist>
<parameterdescription>
<para>The ocean&apos;s grid structure. </para>
</parameterdescription>
</parameteritem>
<parameteritem>
<parameternamelist>
<parametername direction="in">gv</parametername>
</parameternamelist>
<parameterdescription>
<para>The ocean&apos;s vertical grid structure. </para>
</parameterdescription>
</parameteritem>
<parameteritem>
<parameternamelist>
<parametername direction="in">us</parametername>
</parameternamelist>
<parameterdescription>
<para>A dimensional unit scaling type </para>
</parameterdescription>
</parameteritem>
<parameteritem>
<parameternamelist>
<parametername direction="out">h</parametername>
</parameternamelist>
<parameterdescription>
<para>The thickness that is being initialized [H ~&gt; m or kg m-2]. </para>
</parameterdescription>
</parameteritem>
<parameteritem>
<parameternamelist>
<parametername direction="in">param_file</parametername>
</parameternamelist>
<parameterdescription>
<para>A structure indicating the open file to parse for model parameter values. </para>
</parameterdescription>
</parameteritem>
<parameteritem>
<parameternamelist>
<parametername>eqn_of_state</parametername>
</parameternamelist>
<parameterdescription>
<para>Equation of state structure </para>
</parameterdescription>
</parameteritem>
<parameteritem>
<parameternamelist>
<parametername direction="in">p_ref</parametername>
</parameternamelist>
<parameterdescription>
<para>The coordinate-density reference pressure [R L2 T-2 ~&gt; Pa]. </para>
</parameterdescription>
</parameteritem>
<parameteritem>
<parameternamelist>
<parametername direction="in">just_read_params</parametername>
</parameternamelist>
<parameterdescription>
<para>If present and true, this call will only read parameters without changing h. </para>
</parameterdescription>
</parameteritem>
</parameterlist>
</para>
        </detaileddescription>
        <inbodydescription>
        </inbodydescription>
        <location file="/home/cermak/src/MOM6.devrob/src/user/benchmark_initialization.F90" line="85" column="1" bodyfile="/home/cermak/src/MOM6.devrob/src/user/benchmark_initialization.F90" bodystart="87" bodyend="211"/>
        <references refid="namespacemom__error__handler_1a1c462df7b61f1296407b4af51dfeceab" compoundref="MOM__error__handler_8F90" startline="53" endline="66">mom_error_handler::mom_mesg</references>
      </memberdef>
      <memberdef kind="function" id="namespacebenchmark__initialization_1a87453c99eb3531147878d61b774c91a8" prot="public" static="no" const="no" explicit="no" inline="no" virt="non-virtual">
        <type>subroutine, public</type>
        <definition>subroutine, public benchmark_initialization::benchmark_init_temperature_salinity</definition>
        <argsstring>(T, S, G, GV, US, param_file, eqn_of_state, P_Ref, just_read_params)</argsstring>
        <name>benchmark_init_temperature_salinity</name>
        <param>
          <type>T</type>
          <defname>T</defname>
        </param>
        <param>
          <type>S</type>
          <defname>S</defname>
        </param>
        <param>
          <type>G</type>
          <defname>G</defname>
        </param>
        <param>
          <type>GV</type>
          <defname>GV</defname>
        </param>
        <param>
          <type>US</type>
          <defname>US</defname>
        </param>
        <param>
          <type>param_file</type>
          <defname>param_file</defname>
        </param>
        <param>
          <type>eqn_of_state</type>
          <defname>eqn_of_state</defname>
        </param>
        <param>
          <type>P_Ref</type>
          <defname>P_Ref</defname>
        </param>
        <param>
          <type>just_read_params</type>
          <defname>just_read_params</defname>
        </param>
        <briefdescription>
<para>Initializes layer temperatures and salinities for benchmark. </para>
        </briefdescription>
        <detaileddescription>
<para><parameterlist kind="param"><parameteritem>
<parameternamelist>
<parametername direction="in">g</parametername>
</parameternamelist>
<parameterdescription>
<para>The ocean&apos;s grid structure. </para>
</parameterdescription>
</parameteritem>
<parameteritem>
<parameternamelist>
<parametername direction="in">gv</parametername>
</parameternamelist>
<parameterdescription>
<para>The ocean&apos;s vertical grid structure. </para>
</parameterdescription>
</parameteritem>
<parameteritem>
<parameternamelist>
<parametername direction="out">t</parametername>
</parameternamelist>
<parameterdescription>
<para>The potential temperature that is being initialized. </para>
</parameterdescription>
</parameteritem>
<parameteritem>
<parameternamelist>
<parametername direction="out">s</parametername>
</parameternamelist>
<parameterdescription>
<para>The salinity that is being initialized. </para>
</parameterdescription>
</parameteritem>
<parameteritem>
<parameternamelist>
<parametername direction="in">us</parametername>
</parameternamelist>
<parameterdescription>
<para>A dimensional unit scaling type </para>
</parameterdescription>
</parameteritem>
<parameteritem>
<parameternamelist>
<parametername direction="in">param_file</parametername>
</parameternamelist>
<parameterdescription>
<para>A structure indicating the open file to parse for model parameter values. </para>
</parameterdescription>
</parameteritem>
<parameteritem>
<parameternamelist>
<parametername>eqn_of_state</parametername>
</parameternamelist>
<parameterdescription>
<para>Equation of state structure </para>
</parameterdescription>
</parameteritem>
<parameteritem>
<parameternamelist>
<parametername direction="in">p_ref</parametername>
</parameternamelist>
<parameterdescription>
<para>The coordinate-density reference pressure [R L2 T-2 ~&gt; Pa]. </para>
</parameterdescription>
</parameteritem>
<parameteritem>
<parameternamelist>
<parametername direction="in">just_read_params</parametername>
</parameternamelist>
<parameterdescription>
<para>If present and true, this call will only read parameters without changing h. </para>
</parameterdescription>
</parameteritem>
</parameterlist>
</para>
        </detaileddescription>
        <inbodydescription>
        </inbodydescription>
        <location file="/home/cermak/src/MOM6.devrob/src/user/benchmark_initialization.F90" line="215" column="1" bodyfile="/home/cermak/src/MOM6.devrob/src/user/benchmark_initialization.F90" bodystart="217" bodyend="287"/>
        <referencedby refid="namespacemom__state__initialization_1a81503d4f1855cb185f122d6314e4f06c" compoundref="MOM__state__initialization_8F90" startline="117" endline="615">mom_state_initialization::mom_initialize_state</referencedby>
      </memberdef>
      </sectiondef>
    <briefdescription>
<para>Initialization for the &quot;bench mark&quot; configuration. </para>
    </briefdescription>
    <detaileddescription>
    </detaileddescription>
    <location file="/home/cermak/src/MOM6.devrob/src/user/benchmark_initialization.F90" line="2" column="1"/>
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