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  <compounddef id="namespacedome__tracer" kind="namespace" language="Fortran">
    <compoundname>dome_tracer</compoundname>
    <innerclass refid="structdome__tracer_1_1dome__tracer__cs" prot="public">dome_tracer::dome_tracer_cs</innerclass>
      <sectiondef kind="var">
      <memberdef kind="variable" id="namespacedome__tracer_1aff19e4480bbd15ebd5b1697d612bf756" prot="private" static="no" mutable="no">
        <type>integer, parameter</type>
        <definition>integer, parameter dome_tracer::ntr</definition>
        <argsstring></argsstring>
        <name>ntr</name>
        <initializer>= 11</initializer>
        <briefdescription>
<para>The number of tracers in this module. </para>
        </briefdescription>
        <detaileddescription>
        </detaileddescription>
        <inbodydescription>
        </inbodydescription>
        <location file="/home/cermak/src/MOM6.devrob/src/tracer/DOME_tracer.F90" line="39" column="1" bodyfile="/home/cermak/src/MOM6.devrob/src/tracer/DOME_tracer.F90" bodystart="39" bodyend="39"/>
        <referencedby refid="namespacedome__tracer_1afcf9c716f103f76a5013ebdf53571920" compoundref="DOME__tracer_8F90" startline="287" endline="335">dome_tracer_column_physics</referencedby>
        <referencedby refid="namespacedome__tracer_1ad0339c25b9e4fb077f55e990d4213c37" compoundref="DOME__tracer_8F90" startline="342" endline="368">dome_tracer_surface_state</referencedby>
        <referencedby refid="namespacedome__tracer_1a06a4e3eaa52d9e63528e5997081f989e" compoundref="DOME__tracer_8F90" startline="144" endline="276">initialize_dome_tracer</referencedby>
        <referencedby refid="namespacedome__tracer_1a2a6918ef09b8674c6ad56f80dfc370ff" compoundref="DOME__tracer_8F90" startline="64" endline="138">register_dome_tracer</referencedby>
      </memberdef>
      </sectiondef>
      <sectiondef kind="func">
      <memberdef kind="function" id="namespacedome__tracer_1a2a6918ef09b8674c6ad56f80dfc370ff" prot="public" static="no" const="no" explicit="no" inline="no" virt="non-virtual">
        <type>logical function, public</type>
        <definition>logical function, public dome_tracer::register_dome_tracer</definition>
        <argsstring>(HI, GV, param_file, CS, tr_Reg, restart_CS)</argsstring>
        <name>register_dome_tracer</name>
        <param>
          <type>HI</type>
          <defname>HI</defname>
        </param>
        <param>
          <type>GV</type>
          <defname>GV</defname>
        </param>
        <param>
          <type>param_file</type>
          <defname>param_file</defname>
        </param>
        <param>
          <type>CS</type>
          <defname>CS</defname>
        </param>
        <param>
          <type>tr_Reg</type>
          <defname>tr_Reg</defname>
        </param>
        <param>
          <type>restart_CS</type>
          <defname>restart_CS</defname>
        </param>
        <briefdescription>
<para>Register tracer fields and subroutines to be used with MOM. </para>
        </briefdescription>
        <detaileddescription>
<para><parameterlist kind="param"><parameteritem>
<parameternamelist>
<parametername direction="in">hi</parametername>
</parameternamelist>
<parameterdescription>
<para>A horizontal index type structure. </para>
</parameterdescription>
</parameteritem>
<parameteritem>
<parameternamelist>
<parametername direction="in">gv</parametername>
</parameternamelist>
<parameterdescription>
<para>The ocean&apos;s vertical grid structure </para>
</parameterdescription>
</parameteritem>
<parameteritem>
<parameternamelist>
<parametername direction="in">param_file</parametername>
</parameternamelist>
<parameterdescription>
<para>A structure to parse for run-time parameters </para>
</parameterdescription>
</parameteritem>
<parameteritem>
<parameternamelist>
<parametername>cs</parametername>
</parameternamelist>
<parameterdescription>
<para>A pointer that is set to point to the control structure for this module </para>
</parameterdescription>
</parameteritem>
<parameteritem>
<parameternamelist>
<parametername>tr_reg</parametername>
</parameternamelist>
<parameterdescription>
<para>A pointer to the tracer registry. </para>
</parameterdescription>
</parameteritem>
<parameteritem>
<parameternamelist>
<parametername>restart_cs</parametername>
</parameternamelist>
<parameterdescription>
<para>A pointer to the restart control structure. </para>
</parameterdescription>
</parameteritem>
</parameterlist>
</para>
        </detaileddescription>
        <inbodydescription>
        </inbodydescription>
        <location file="/home/cermak/src/MOM6.devrob/src/tracer/DOME_tracer.F90" line="63" column="1" bodyfile="/home/cermak/src/MOM6.devrob/src/tracer/DOME_tracer.F90" bodystart="64" bodyend="138"/>
        <references refid="namespaceatmos__ocean__fluxes__mod_1a1bd0443a803dd443bd7a4f24dae28e13" compoundref="atmos__ocean__fluxes_8F90" startline="18" endline="36">atmos_ocean_fluxes_mod::aof_set_coupler_flux</references>
        <references refid="namespacemom__error__handler_1a460cfb79a06c29fc249952c2a3710d67" compoundref="MOM__error__handler_8F90" startline="72" endline="92">mom_error_handler::mom_error</references>
        <references refid="namespacedome__tracer_1aff19e4480bbd15ebd5b1697d612bf756" compoundref="DOME__tracer_8F90" startline="39" endline="39">ntr</references>
        <references refid="namespacemom__tracer__registry_1a97a70989bd0318f51d90c2fc6f87c6f5" compoundref="MOM__tracer__registry_8F90" startline="158" endline="325">mom_tracer_registry::register_tracer</references>
        <references refid="namespacemom__io_1a09be50ad112d6bc134d06d82fcbe1fdc" compoundref="MOM__io_8F90" startline="600" endline="632">mom_io::var_desc</references>
      </memberdef>
      <memberdef kind="function" id="namespacedome__tracer_1a06a4e3eaa52d9e63528e5997081f989e" prot="public" static="no" const="no" explicit="no" inline="no" virt="non-virtual">
        <type>subroutine, public</type>
        <definition>subroutine, public dome_tracer::initialize_dome_tracer</definition>
        <argsstring>(restart, day, G, GV, US, h, diag, OBC, CS, sponge_CSp, param_file)</argsstring>
        <name>initialize_dome_tracer</name>
        <param>
          <type>restart</type>
          <defname>restart</defname>
        </param>
        <param>
          <type>day</type>
          <defname>day</defname>
        </param>
        <param>
          <type>G</type>
          <defname>G</defname>
        </param>
        <param>
          <type>GV</type>
          <defname>GV</defname>
        </param>
        <param>
          <type>US</type>
          <defname>US</defname>
        </param>
        <param>
          <type>h</type>
          <defname>h</defname>
        </param>
        <param>
          <type>diag</type>
          <defname>diag</defname>
        </param>
        <param>
          <type>OBC</type>
          <defname>OBC</defname>
        </param>
        <param>
          <type>CS</type>
          <defname>CS</defname>
        </param>
        <param>
          <type>sponge_CSp</type>
          <defname>sponge_CSp</defname>
        </param>
        <param>
          <type>param_file</type>
          <defname>param_file</defname>
        </param>
        <briefdescription>
<para>Initializes the NTR tracer fields in tr(:,:,:,:) and sets up the tracer output. </para>
        </briefdescription>
        <detaileddescription>
<para><parameterlist kind="param"><parameteritem>
<parameternamelist>
<parametername direction="in">g</parametername>
</parameternamelist>
<parameterdescription>
<para>The ocean&apos;s grid structure </para>
</parameterdescription>
</parameteritem>
<parameteritem>
<parameternamelist>
<parametername direction="in">gv</parametername>
</parameternamelist>
<parameterdescription>
<para>The ocean&apos;s vertical grid structure </para>
</parameterdescription>
</parameteritem>
<parameteritem>
<parameternamelist>
<parametername direction="in">us</parametername>
</parameternamelist>
<parameterdescription>
<para>A dimensional unit scaling type </para>
</parameterdescription>
</parameteritem>
<parameteritem>
<parameternamelist>
<parametername direction="in">restart</parametername>
</parameternamelist>
<parameterdescription>
<para>.true. if the fields have already been read from a restart file. </para>
</parameterdescription>
</parameteritem>
<parameteritem>
<parameternamelist>
<parametername direction="in">day</parametername>
</parameternamelist>
<parameterdescription>
<para>Time of the start of the run. </para>
</parameterdescription>
</parameteritem>
<parameteritem>
<parameternamelist>
<parametername direction="in">h</parametername>
</parameternamelist>
<parameterdescription>
<para>Layer thicknesses [H ~&gt; m or kg m-2] </para>
</parameterdescription>
</parameteritem>
<parameteritem>
<parameternamelist>
<parametername direction="in">diag</parametername>
</parameternamelist>
<parameterdescription>
<para>Structure used to regulate diagnostic output. </para>
</parameterdescription>
</parameteritem>
<parameteritem>
<parameternamelist>
<parametername>obc</parametername>
</parameternamelist>
<parameterdescription>
<para>Structure specifying open boundary options. </para>
</parameterdescription>
</parameteritem>
<parameteritem>
<parameternamelist>
<parametername>cs</parametername>
</parameternamelist>
<parameterdescription>
<para>The control structure returned by a previous call to DOME_register_tracer. </para>
</parameterdescription>
</parameteritem>
<parameteritem>
<parameternamelist>
<parametername>sponge_csp</parametername>
</parameternamelist>
<parameterdescription>
<para>A pointer to the control structure for the sponges, if they are in use. </para>
</parameterdescription>
</parameteritem>
<parameteritem>
<parameternamelist>
<parametername direction="in">param_file</parametername>
</parameternamelist>
<parameterdescription>
<para>A structure to parse for run-time parameters </para>
</parameterdescription>
</parameteritem>
</parameterlist>
</para>
        </detaileddescription>
        <inbodydescription>
        </inbodydescription>
        <location file="/home/cermak/src/MOM6.devrob/src/tracer/DOME_tracer.F90" line="142" column="1" bodyfile="/home/cermak/src/MOM6.devrob/src/tracer/DOME_tracer.F90" bodystart="144" bodyend="276"/>
        <references refid="namespacemom__error__handler_1a460cfb79a06c29fc249952c2a3710d67" compoundref="MOM__error__handler_8F90" startline="72" endline="92">mom_error_handler::mom_error</references>
        <references refid="namespacedome__tracer_1aff19e4480bbd15ebd5b1697d612bf756" compoundref="DOME__tracer_8F90" startline="39" endline="39">ntr</references>
        <references refid="namespacemom__io_1aa583d22dfaf16e3157b2741d838f5240" compoundref="MOM__io_8F90" startline="699" endline="737">mom_io::query_vardesc</references>
        <references refid="namespacemom__sponge_1af3da4a8b352c4130919d7bfedf1a5a3e" compoundref="MOM__sponge_8F90" startline="214" endline="270">mom_sponge::set_up_sponge_field</references>
      </memberdef>
      <memberdef kind="function" id="namespacedome__tracer_1afcf9c716f103f76a5013ebdf53571920" prot="public" static="no" const="no" explicit="no" inline="no" virt="non-virtual">
        <type>subroutine, public</type>
        <definition>subroutine, public dome_tracer::dome_tracer_column_physics</definition>
        <argsstring>(h_old, h_new, ea, eb, fluxes, dt, G, GV, US, CS, evap_CFL_limit, minimum_forcing_depth)</argsstring>
        <name>dome_tracer_column_physics</name>
        <param>
          <type>h_old</type>
          <defname>h_old</defname>
        </param>
        <param>
          <type>h_new</type>
          <defname>h_new</defname>
        </param>
        <param>
          <type>ea</type>
          <defname>ea</defname>
        </param>
        <param>
          <type>eb</type>
          <defname>eb</defname>
        </param>
        <param>
          <type>fluxes</type>
          <defname>fluxes</defname>
        </param>
        <param>
          <type>dt</type>
          <defname>dt</defname>
        </param>
        <param>
          <type>G</type>
          <defname>G</defname>
        </param>
        <param>
          <type>GV</type>
          <defname>GV</defname>
        </param>
        <param>
          <type>US</type>
          <defname>US</defname>
        </param>
        <param>
          <type>CS</type>
          <defname>CS</defname>
        </param>
        <param>
          <type>evap_CFL_limit</type>
          <defname>evap_CFL_limit</defname>
        </param>
        <param>
          <type>minimum_forcing_depth</type>
          <defname>minimum_forcing_depth</defname>
        </param>
        <briefdescription>
<para>This subroutine applies diapycnal diffusion and any other column tracer physics or chemistry to the tracers from this file. This is a simple example of a set of advected passive tracers. </para>
        </briefdescription>
        <detaileddescription>
<para>The arguments to this subroutine are redundant in that h_new(k) = h_old(k) + ea(k) - eb(k-1) + eb(k) - ea(k+1) <parameterlist kind="param"><parameteritem>
<parameternamelist>
<parametername direction="in">g</parametername>
</parameternamelist>
<parameterdescription>
<para>The ocean&apos;s grid structure </para>
</parameterdescription>
</parameteritem>
<parameteritem>
<parameternamelist>
<parametername direction="in">gv</parametername>
</parameternamelist>
<parameterdescription>
<para>The ocean&apos;s vertical grid structure </para>
</parameterdescription>
</parameteritem>
<parameteritem>
<parameternamelist>
<parametername direction="in">h_old</parametername>
</parameternamelist>
<parameterdescription>
<para>Layer thickness before entrainment [H ~&gt; m or kg m-2]. </para>
</parameterdescription>
</parameteritem>
<parameteritem>
<parameternamelist>
<parametername direction="in">h_new</parametername>
</parameternamelist>
<parameterdescription>
<para>Layer thickness after entrainment [H ~&gt; m or kg m-2]. </para>
</parameterdescription>
</parameteritem>
<parameteritem>
<parameternamelist>
<parametername direction="in">ea</parametername>
</parameternamelist>
<parameterdescription>
<para>an array to which the amount of fluid entrained </para>
</parameterdescription>
</parameteritem>
<parameteritem>
<parameternamelist>
<parametername direction="in">eb</parametername>
</parameternamelist>
<parameterdescription>
<para>an array to which the amount of fluid entrained </para>
</parameterdescription>
</parameteritem>
<parameteritem>
<parameternamelist>
<parametername direction="in">fluxes</parametername>
</parameternamelist>
<parameterdescription>
<para>A structure containing pointers to thermodynamic and tracer forcing fields. Unused fields have NULL ptrs. </para>
</parameterdescription>
</parameteritem>
<parameteritem>
<parameternamelist>
<parametername direction="in">dt</parametername>
</parameternamelist>
<parameterdescription>
<para>The amount of time covered by this call [T ~&gt; s] </para>
</parameterdescription>
</parameteritem>
<parameteritem>
<parameternamelist>
<parametername direction="in">us</parametername>
</parameternamelist>
<parameterdescription>
<para>A dimensional unit scaling type </para>
</parameterdescription>
</parameteritem>
<parameteritem>
<parameternamelist>
<parametername>cs</parametername>
</parameternamelist>
<parameterdescription>
<para>The control structure returned by a previous call to DOME_register_tracer. </para>
</parameterdescription>
</parameteritem>
<parameteritem>
<parameternamelist>
<parametername direction="in">evap_cfl_limit</parametername>
</parameternamelist>
<parameterdescription>
<para>Limit on the fraction of the water that can be fluxed out of the top layer in a timestep [nondim] </para>
</parameterdescription>
</parameteritem>
<parameteritem>
<parameternamelist>
<parametername direction="in">minimum_forcing_depth</parametername>
</parameternamelist>
<parameterdescription>
<para>The smallest depth over which fluxes can be applied [H ~&gt; m or kg m-2] </para>
</parameterdescription>
</parameteritem>
</parameterlist>
</para>
        </detaileddescription>
        <inbodydescription>
        </inbodydescription>
        <location file="/home/cermak/src/MOM6.devrob/src/tracer/DOME_tracer.F90" line="285" column="1" bodyfile="/home/cermak/src/MOM6.devrob/src/tracer/DOME_tracer.F90" bodystart="287" bodyend="335"/>
        <references refid="namespacemom__tracer__diabatic_1ad4d3d4de0f2b84c15bccc5eb2f767df3" compoundref="MOM__tracer__diabatic_8F90" startline="230" endline="443">mom_tracer_diabatic::applytracerboundaryfluxesinout</references>
        <references refid="namespacedome__tracer_1aff19e4480bbd15ebd5b1697d612bf756" compoundref="DOME__tracer_8F90" startline="39" endline="39">ntr</references>
        <references refid="namespacemom__tracer__diabatic_1ac5d57973547cc4ed3a89808d3910943e" compoundref="MOM__tracer__diabatic_8F90" startline="27" endline="222">mom_tracer_diabatic::tracer_vertdiff</references>
      </memberdef>
      <memberdef kind="function" id="namespacedome__tracer_1ad0339c25b9e4fb077f55e990d4213c37" prot="public" static="no" const="no" explicit="no" inline="no" virt="non-virtual">
        <type>subroutine, public</type>
        <definition>subroutine, public dome_tracer::dome_tracer_surface_state</definition>
        <argsstring>(sfc_state, h, G, CS)</argsstring>
        <name>dome_tracer_surface_state</name>
        <param>
          <type>sfc_state</type>
          <defname>sfc_state</defname>
        </param>
        <param>
          <type>h</type>
          <defname>h</defname>
        </param>
        <param>
          <type>G</type>
          <defname>G</defname>
        </param>
        <param>
          <type>CS</type>
          <defname>CS</defname>
        </param>
        <briefdescription>
<para>This subroutine extracts the surface fields from this tracer package that are to be shared with the atmosphere in coupled configurations. This particular tracer package does not report anything back to the coupler. </para>
        </briefdescription>
        <detaileddescription>
<para><parameterlist kind="param"><parameteritem>
<parameternamelist>
<parametername direction="in">g</parametername>
</parameternamelist>
<parameterdescription>
<para>The ocean&apos;s grid structure. </para>
</parameterdescription>
</parameteritem>
<parameteritem>
<parameternamelist>
<parametername direction="inout">sfc_state</parametername>
</parameternamelist>
<parameterdescription>
<para>A structure containing fields that describe the surface state of the ocean. </para>
</parameterdescription>
</parameteritem>
<parameteritem>
<parameternamelist>
<parametername direction="in">h</parametername>
</parameternamelist>
<parameterdescription>
<para>Layer thickness [H ~&gt; m or kg m-2]. </para>
</parameterdescription>
</parameteritem>
<parameteritem>
<parameternamelist>
<parametername>cs</parametername>
</parameternamelist>
<parameterdescription>
<para>The control structure returned by a previous call to DOME_register_tracer. </para>
</parameterdescription>
</parameteritem>
</parameterlist>
</para>
        </detaileddescription>
        <inbodydescription>
        </inbodydescription>
        <location file="/home/cermak/src/MOM6.devrob/src/tracer/DOME_tracer.F90" line="341" column="1" bodyfile="/home/cermak/src/MOM6.devrob/src/tracer/DOME_tracer.F90" bodystart="342" bodyend="368"/>
        <references refid="namespacedome__tracer_1aff19e4480bbd15ebd5b1697d612bf756" compoundref="DOME__tracer_8F90" startline="39" endline="39">ntr</references>
      </memberdef>
      <memberdef kind="function" id="namespacedome__tracer_1a6604ab13177c5fb4a0dd8b43a17b4649" prot="public" static="no" const="no" explicit="no" inline="no" virt="non-virtual">
        <type>subroutine, public</type>
        <definition>subroutine, public dome_tracer::dome_tracer_end</definition>
        <argsstring>(CS)</argsstring>
        <name>dome_tracer_end</name>
        <param>
          <type>CS</type>
          <defname>CS</defname>
        </param>
        <briefdescription>
<para>Clean up memory allocations, if any. </para>
        </briefdescription>
        <detaileddescription>
<para><parameterlist kind="param"><parameteritem>
<parameternamelist>
<parametername>cs</parametername>
</parameternamelist>
<parameterdescription>
<para>The control structure returned by a previous call to DOME_register_tracer. </para>
</parameterdescription>
</parameteritem>
</parameterlist>
</para>
        </detaileddescription>
        <inbodydescription>
        </inbodydescription>
        <location file="/home/cermak/src/MOM6.devrob/src/tracer/DOME_tracer.F90" line="372" column="1" bodyfile="/home/cermak/src/MOM6.devrob/src/tracer/DOME_tracer.F90" bodystart="373" bodyend="380"/>
      </memberdef>
      </sectiondef>
    <briefdescription>
<para>A tracer package that is used as a diagnostic in the DOME experiments. </para>
    </briefdescription>
    <detaileddescription>
<para>By Robert Hallberg, 2002</para>
<para>This file contains an example of the code that is needed to set up and use a set (in this case eleven) of dynamically passive tracers. These tracers dye the inflowing water or water initially within a range of latitudes or water initially in a range of depths.</para>
<para>A single subroutine is called from within each file to register each of the tracers for reinitialization and advection and to register the subroutine that initializes the tracers and set up their output and the subroutine that does any tracer physics or chemistry along with diapycnal mixing (included here because some tracers may float or swim vertically or dye diapycnal processes). </para>
    </detaileddescription>
    <location file="/home/cermak/src/MOM6.devrob/src/tracer/DOME_tracer.F90" line="2" column="1"/>
  </compounddef>
</doxygen>
