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MOM6
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Alistair Adcroft and Robert Hallberg. On methods for solving the oceanic equations of motion in generalized vertical coordinates. Ocean Modelling, 11(1-2):224–233, January 2006.
Alistair Adcroft, Robert Hallberg, and Matthew Harrison. A finite volume discretization of the pressure gradient force using analytic integration. Ocean Modelling, 22(3-4):106–113, January 2008.
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Peter R. Gent, Jurgen Willebrand, Trevor J. McDougall, and James C. McWilliams. Parameterizing Eddy-Induced Tracer Transports in Ocean Circulation Models. Journal of Physical Oceanography, 25(4):463–474, April 1995.
Stephen M. Griffies and Robert W. Hallberg. Biharmonic Friction with a Smagorinsky-Like Viscosity for Use in Large-Scale Eddy-Permitting Ocean Models. Monthly Weather Review, 128(8):2935–2946, August 2000.
Stephen M. Griffies, Claus Böning, Frank O. Bryan, Eric P. Chassignet, Rüdiger Gerdes, Hiroyasu Hasumi, Anthony Hirst, Anne-Marie Treguier, and David Webb. Developments in ocean climate modelling. Ocean Modelling, 2(3):123–192, January 2000.
Stephen M. Griffies. Fundamentals of Ocean Climate Models. Princeton University Press, Princeton, USA, 2004. 518+xxxiv pages.
Robert Hallberg and Alistair Adcroft. Reconciling estimates of the free surface height in Lagrangian vertical coordinate ocean models with mode-split time stepping. Ocean Modelling, 29(1):15–26, January 2009.
Robert Hallberg. Localized Coupling between Surface and Bottom-Intensified Flow over Topography. Journal of Physical Oceanography, 27(6):977–998, June 1997.
Robert Hallberg. Stable split time stepping schemes for large-scale ocean modeling. Journal of Computational Physics, 135:54–65, 1997.
Robert Hallberg. A thermobaric instability of lagrangian vertical coordinate ocean models. Ocean Modelling, 8, 2005.
C. W. Hirt, A. A. Amsden, and J. L. Cook. An Arbitrary Lagrangian-Eulerian Computing Method for All Flow Speeds. Journal of Computational Physics, 135(2):203–216, August 1997.
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IOC, SCOR, and IAPSO. The international thermodynamic equation of seawater-2010: calculation and use of thermodynamic properties. Intergovernmental Oceanographic Commission, Manuals and Guides No. 56, UNESCO,
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W. G. Large, J. C. McWilliams, and S. C. Doney. Oceanic vertical mixing: A review and a model with a nonlocal boundary layer parameterization. Reviews of Geophysics, 32(4):363–403, 1994.
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Trevor J. McDougall and Peter C. McIntosh. The Temporal-Residual-Mean Velocity. Part II: Isopycnal Interpretation and the Tracer and Momentum Equations. Journal of Physical Oceanography, 31(5):1222–1246, May 2001.
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F. Roquet, G. Madec, T. J. McDougall, and P. M. Barker. Accurate polynomial expressions for the density and specific volume of seawater using the teos-10 standard. Ocean Modelling, 90:29–43, 2015.
Gary L. Russell and Jean A. Lerner. A new finite-differencing scheme for the tracer transport equation. Journal of Applied Meteorology, 20:1483–1498, 1981.
Robert Sadourny. The Dynamics of Finite-Difference Models of the Shallow-Water Equations. Journal of the Atmospheric Sciences, 32(4):680–689, April 1975.
Andrew Shao, Alistair Adcroft, Robert Hallberg, and Stephen Griffies. A new, general-coordinate, non-local neutral diffusion operator, 2019.
A. F. Shchepetkin and J. C. McWilliams. The regional ocean modeling system (roms): A split-explicit, free-surface, topography-following coordinates oceanic model. Ocean Modeling, 9:347–404, 2005.
Shan Sun, Rainer Bleck, Claes Rooth, John Dukowicz, Eric Chassignet, and Peter Killworth. Inclusion of thermobaricity in isopycnic-coordinate ocean models. Journal of Physical Oceanography, 29:2719–2729, 1999.
Geoffrey K. Vallis. Atmospheric and Oceanic Fluid Dynamics: Fundamentals and Large-scale Circulation. Cambridge University Press, Cambridge, 2nd edition, 2017. 946 + xxv pp.
Laurent White and Alistair Adcroft. A high-order finite volume remapping scheme for nonuniform grids: The piecewise quartic method (PQM). Journal of Computational Physics, 227(15):7394–7422, July 2008.
Laurent White, Alistair Adcroft, and Robert Hallberg. High-order regridding-remapping schemes for continuous isopycnal and generalized coordinates in ocean models. Journal of Computational Physics, 228(23):8665–8692, December 2009.
Daniel G. Wright. An Equation of State for Use in Ocean Models: Eckart's Formula Revisited. Journal of Atmospheric and Oceanic Technology, 14(3):735–740, June