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Preprocessing /home/cermak/src/MOM6.devrob/src/diagnostics/MOM_debugging.F90...
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Preprocessing /home/cermak/src/MOM6.devrob/src/diagnostics/MOM_obsolete_params.F90...
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Preprocessing /home/cermak/src/MOM6.devrob/src/diagnostics/MOM_PointAccel.F90...
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Preprocessing /home/cermak/src/MOM6.devrob/src/diagnostics/MOM_sum_output.F90...
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Preprocessing /home/cermak/src/MOM6.devrob/src/diagnostics/MOM_wave_speed.F90...
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Preprocessing /home/cermak/src/MOM6.devrob/src/diagnostics/MOM_wave_structure.F90...
Parsing file /home/cermak/src/MOM6.devrob/src/diagnostics/MOM_wave_structure.F90...
Preprocessing /home/cermak/src/MOM6.devrob/src/equation_of_state/_Equation_of_State.dox...
Parsing file /home/cermak/src/MOM6.devrob/src/equation_of_state/_Equation_of_State.dox...
Preprocessing /home/cermak/src/MOM6.devrob/src/equation_of_state/MOM_EOS.F90...
Parsing file /home/cermak/src/MOM6.devrob/src/equation_of_state/MOM_EOS.F90...
Preprocessing /home/cermak/src/MOM6.devrob/src/equation_of_state/MOM_EOS_linear.F90...
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Preprocessing /home/cermak/src/MOM6.devrob/src/equation_of_state/MOM_EOS_NEMO.F90...
Parsing file /home/cermak/src/MOM6.devrob/src/equation_of_state/MOM_EOS_NEMO.F90...
Preprocessing /home/cermak/src/MOM6.devrob/src/equation_of_state/MOM_EOS_TEOS10.F90...
Parsing file /home/cermak/src/MOM6.devrob/src/equation_of_state/MOM_EOS_TEOS10.F90...
Preprocessing /home/cermak/src/MOM6.devrob/src/equation_of_state/MOM_EOS_UNESCO.F90...
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Preprocessing /home/cermak/src/MOM6.devrob/src/equation_of_state/MOM_EOS_Wright.F90...
Parsing file /home/cermak/src/MOM6.devrob/src/equation_of_state/MOM_EOS_Wright.F90...
Preprocessing /home/cermak/src/MOM6.devrob/src/equation_of_state/MOM_TFreeze.F90...
Parsing file /home/cermak/src/MOM6.devrob/src/equation_of_state/MOM_TFreeze.F90...
Preprocessing /home/cermak/src/MOM6.devrob/src/framework/_Diagnostics.dox...
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Preprocessing /home/cermak/src/MOM6.devrob/src/framework/_Domain_decomposition.dox...
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Preprocessing /home/cermak/src/MOM6.devrob/src/framework/_Global_grids.dox...
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Preprocessing /home/cermak/src/MOM6.devrob/src/framework/_Horizontal_indexing.dox...
Parsing file /home/cermak/src/MOM6.devrob/src/framework/_Horizontal_indexing.dox...
Preprocessing /home/cermak/src/MOM6.devrob/src/framework/_Parallel_IO.dox...
Parsing file /home/cermak/src/MOM6.devrob/src/framework/_Parallel_IO.dox...
Preprocessing /home/cermak/src/MOM6.devrob/src/framework/_Regional_grids.dox...
Parsing file /home/cermak/src/MOM6.devrob/src/framework/_Regional_grids.dox...
Preprocessing /home/cermak/src/MOM6.devrob/src/framework/_Runtime_parameter_system.dox...
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Preprocessing /home/cermak/src/MOM6.devrob/src/framework/_Testing.dox...
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Preprocessing /home/cermak/src/MOM6.devrob/src/framework/MOM_array_transform.F90...
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Preprocessing /home/cermak/src/MOM6.devrob/src/framework/MOM_coms.F90...
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Preprocessing /home/cermak/src/MOM6.devrob/src/framework/MOM_constants.F90...
Parsing file /home/cermak/src/MOM6.devrob/src/framework/MOM_constants.F90...
Preprocessing /home/cermak/src/MOM6.devrob/src/framework/MOM_cpu_clock.F90...
Parsing file /home/cermak/src/MOM6.devrob/src/framework/MOM_cpu_clock.F90...
Preprocessing /home/cermak/src/MOM6.devrob/src/framework/MOM_diag_manager_wrapper.F90...
Parsing file /home/cermak/src/MOM6.devrob/src/framework/MOM_diag_manager_wrapper.F90...
Preprocessing /home/cermak/src/MOM6.devrob/src/framework/MOM_diag_mediator.F90...
Parsing file /home/cermak/src/MOM6.devrob/src/framework/MOM_diag_mediator.F90...
Preprocessing /home/cermak/src/MOM6.devrob/src/framework/MOM_diag_remap.F90...
Parsing file /home/cermak/src/MOM6.devrob/src/framework/MOM_diag_remap.F90...
Preprocessing /home/cermak/src/MOM6.devrob/src/framework/MOM_diag_vkernels.F90...
Parsing file /home/cermak/src/MOM6.devrob/src/framework/MOM_diag_vkernels.F90...
Preprocessing /home/cermak/src/MOM6.devrob/src/framework/MOM_document.F90...
Parsing file /home/cermak/src/MOM6.devrob/src/framework/MOM_document.F90...
Preprocessing /home/cermak/src/MOM6.devrob/src/framework/MOM_domains.F90...
Parsing file /home/cermak/src/MOM6.devrob/src/framework/MOM_domains.F90...
Preprocessing /home/cermak/src/MOM6.devrob/src/framework/MOM_dyn_horgrid.F90...
Parsing file /home/cermak/src/MOM6.devrob/src/framework/MOM_dyn_horgrid.F90...
Preprocessing /home/cermak/src/MOM6.devrob/src/framework/MOM_error_handler.F90...
Parsing file /home/cermak/src/MOM6.devrob/src/framework/MOM_error_handler.F90...
Preprocessing /home/cermak/src/MOM6.devrob/src/framework/MOM_file_parser.F90...
Parsing file /home/cermak/src/MOM6.devrob/src/framework/MOM_file_parser.F90...
Preprocessing /home/cermak/src/MOM6.devrob/src/framework/MOM_get_input.F90...
Parsing file /home/cermak/src/MOM6.devrob/src/framework/MOM_get_input.F90...
Preprocessing /home/cermak/src/MOM6.devrob/src/framework/MOM_hor_index.F90...
Parsing file /home/cermak/src/MOM6.devrob/src/framework/MOM_hor_index.F90...
Preprocessing /home/cermak/src/MOM6.devrob/src/framework/MOM_horizontal_regridding.F90...
Parsing file /home/cermak/src/MOM6.devrob/src/framework/MOM_horizontal_regridding.F90...
Preprocessing /home/cermak/src/MOM6.devrob/src/framework/MOM_intrinsic_functions.F90...
Parsing file /home/cermak/src/MOM6.devrob/src/framework/MOM_intrinsic_functions.F90...
Preprocessing /home/cermak/src/MOM6.devrob/src/framework/MOM_io.F90...
Parsing file /home/cermak/src/MOM6.devrob/src/framework/MOM_io.F90...
Preprocessing /home/cermak/src/MOM6.devrob/src/framework/MOM_memory_macros.h...
Parsing file /home/cermak/src/MOM6.devrob/src/framework/MOM_memory_macros.h...
Preprocessing /home/cermak/src/MOM6.devrob/src/framework/MOM_random.F90...
Parsing file /home/cermak/src/MOM6.devrob/src/framework/MOM_random.F90...
Preprocessing /home/cermak/src/MOM6.devrob/src/framework/MOM_restart.F90...
Parsing file /home/cermak/src/MOM6.devrob/src/framework/MOM_restart.F90...
Preprocessing /home/cermak/src/MOM6.devrob/src/framework/MOM_safe_alloc.F90...
Parsing file /home/cermak/src/MOM6.devrob/src/framework/MOM_safe_alloc.F90...
Preprocessing /home/cermak/src/MOM6.devrob/src/framework/MOM_spatial_means.F90...
Parsing file /home/cermak/src/MOM6.devrob/src/framework/MOM_spatial_means.F90...
Preprocessing /home/cermak/src/MOM6.devrob/src/framework/MOM_string_functions.F90...
Parsing file /home/cermak/src/MOM6.devrob/src/framework/MOM_string_functions.F90...
Preprocessing /home/cermak/src/MOM6.devrob/src/framework/MOM_time_manager.F90...
Parsing file /home/cermak/src/MOM6.devrob/src/framework/MOM_time_manager.F90...
Preprocessing /home/cermak/src/MOM6.devrob/src/framework/MOM_transform_FMS.F90...
Parsing file /home/cermak/src/MOM6.devrob/src/framework/MOM_transform_FMS.F90...
Preprocessing /home/cermak/src/MOM6.devrob/src/framework/MOM_unit_scaling.F90...
Parsing file /home/cermak/src/MOM6.devrob/src/framework/MOM_unit_scaling.F90...
Preprocessing /home/cermak/src/MOM6.devrob/src/framework/MOM_write_cputime.F90...
Parsing file /home/cermak/src/MOM6.devrob/src/framework/MOM_write_cputime.F90...
Preprocessing /home/cermak/src/MOM6.devrob/src/framework/version_variable.h...
Parsing file /home/cermak/src/MOM6.devrob/src/framework/version_variable.h...
Preprocessing /home/cermak/src/MOM6.devrob/src/ice_shelf/MOM_ice_shelf.F90...
Parsing file /home/cermak/src/MOM6.devrob/src/ice_shelf/MOM_ice_shelf.F90...
Preprocessing /home/cermak/src/MOM6.devrob/src/ice_shelf/MOM_ice_shelf_dynamics.F90...
Parsing file /home/cermak/src/MOM6.devrob/src/ice_shelf/MOM_ice_shelf_dynamics.F90...
Preprocessing /home/cermak/src/MOM6.devrob/src/ice_shelf/MOM_ice_shelf_initialize.F90...
Parsing file /home/cermak/src/MOM6.devrob/src/ice_shelf/MOM_ice_shelf_initialize.F90...
Preprocessing /home/cermak/src/MOM6.devrob/src/ice_shelf/MOM_ice_shelf_state.F90...
Parsing file /home/cermak/src/MOM6.devrob/src/ice_shelf/MOM_ice_shelf_state.F90...
Preprocessing /home/cermak/src/MOM6.devrob/src/ice_shelf/MOM_marine_ice.F90...
Parsing file /home/cermak/src/MOM6.devrob/src/ice_shelf/MOM_marine_ice.F90...
Preprocessing /home/cermak/src/MOM6.devrob/src/ice_shelf/user_shelf_init.F90...
Parsing file /home/cermak/src/MOM6.devrob/src/ice_shelf/user_shelf_init.F90...
Preprocessing /home/cermak/src/MOM6.devrob/src/initialization/MOM_coord_initialization.F90...
Parsing file /home/cermak/src/MOM6.devrob/src/initialization/MOM_coord_initialization.F90...
Preprocessing /home/cermak/src/MOM6.devrob/src/initialization/MOM_fixed_initialization.F90...
Parsing file /home/cermak/src/MOM6.devrob/src/initialization/MOM_fixed_initialization.F90...
Preprocessing /home/cermak/src/MOM6.devrob/src/initialization/MOM_grid_initialize.F90...
Parsing file /home/cermak/src/MOM6.devrob/src/initialization/MOM_grid_initialize.F90...
Preprocessing /home/cermak/src/MOM6.devrob/src/initialization/MOM_shared_initialization.F90...
Parsing file /home/cermak/src/MOM6.devrob/src/initialization/MOM_shared_initialization.F90...
Preprocessing /home/cermak/src/MOM6.devrob/src/initialization/MOM_state_initialization.F90...
Parsing file /home/cermak/src/MOM6.devrob/src/initialization/MOM_state_initialization.F90...
Preprocessing /home/cermak/src/MOM6.devrob/src/initialization/MOM_tracer_initialization_from_Z.F90...
Parsing file /home/cermak/src/MOM6.devrob/src/initialization/MOM_tracer_initialization_from_Z.F90...
Preprocessing /home/cermak/src/MOM6.devrob/src/ocean_data_assim/MOM_oda_driver.F90...
Parsing file /home/cermak/src/MOM6.devrob/src/ocean_data_assim/MOM_oda_driver.F90...
Preprocessing /home/cermak/src/MOM6.devrob/src/parameterizations/lateral/MOM_hor_visc.F90...
Parsing file /home/cermak/src/MOM6.devrob/src/parameterizations/lateral/MOM_hor_visc.F90...
Preprocessing /home/cermak/src/MOM6.devrob/src/parameterizations/lateral/MOM_internal_tides.F90...
Parsing file /home/cermak/src/MOM6.devrob/src/parameterizations/lateral/MOM_internal_tides.F90...
Preprocessing /home/cermak/src/MOM6.devrob/src/parameterizations/lateral/MOM_lateral_mixing_coeffs.F90...
Parsing file /home/cermak/src/MOM6.devrob/src/parameterizations/lateral/MOM_lateral_mixing_coeffs.F90...
Preprocessing /home/cermak/src/MOM6.devrob/src/parameterizations/lateral/MOM_MEKE.F90...
Parsing file /home/cermak/src/MOM6.devrob/src/parameterizations/lateral/MOM_MEKE.F90...
Preprocessing /home/cermak/src/MOM6.devrob/src/parameterizations/lateral/MOM_MEKE_types.F90...
Parsing file /home/cermak/src/MOM6.devrob/src/parameterizations/lateral/MOM_MEKE_types.F90...
Preprocessing /home/cermak/src/MOM6.devrob/src/parameterizations/lateral/MOM_mixed_layer_restrat.F90...
Parsing file /home/cermak/src/MOM6.devrob/src/parameterizations/lateral/MOM_mixed_layer_restrat.F90...
Preprocessing /home/cermak/src/MOM6.devrob/src/parameterizations/lateral/MOM_thickness_diffuse.F90...
Parsing file /home/cermak/src/MOM6.devrob/src/parameterizations/lateral/MOM_thickness_diffuse.F90...
Preprocessing /home/cermak/src/MOM6.devrob/src/parameterizations/lateral/MOM_tidal_forcing.F90...
Parsing file /home/cermak/src/MOM6.devrob/src/parameterizations/lateral/MOM_tidal_forcing.F90...
Preprocessing /home/cermak/src/MOM6.devrob/src/parameterizations/vertical/_CVMix_KPP.dox...
Parsing file /home/cermak/src/MOM6.devrob/src/parameterizations/vertical/_CVMix_KPP.dox...
Preprocessing /home/cermak/src/MOM6.devrob/src/parameterizations/vertical/MOM_ALE_sponge.F90...
Parsing file /home/cermak/src/MOM6.devrob/src/parameterizations/vertical/MOM_ALE_sponge.F90...
Preprocessing /home/cermak/src/MOM6.devrob/src/parameterizations/vertical/MOM_bkgnd_mixing.F90...
Parsing file /home/cermak/src/MOM6.devrob/src/parameterizations/vertical/MOM_bkgnd_mixing.F90...
Preprocessing /home/cermak/src/MOM6.devrob/src/parameterizations/vertical/MOM_bulk_mixed_layer.F90...
Parsing file /home/cermak/src/MOM6.devrob/src/parameterizations/vertical/MOM_bulk_mixed_layer.F90...
Preprocessing /home/cermak/src/MOM6.devrob/src/parameterizations/vertical/MOM_CVMix_conv.F90...
Parsing file /home/cermak/src/MOM6.devrob/src/parameterizations/vertical/MOM_CVMix_conv.F90...
Preprocessing /home/cermak/src/MOM6.devrob/src/parameterizations/vertical/MOM_CVMix_ddiff.F90...
Parsing file /home/cermak/src/MOM6.devrob/src/parameterizations/vertical/MOM_CVMix_ddiff.F90...
Preprocessing /home/cermak/src/MOM6.devrob/src/parameterizations/vertical/MOM_CVMix_KPP.F90...
Parsing file /home/cermak/src/MOM6.devrob/src/parameterizations/vertical/MOM_CVMix_KPP.F90...
Preprocessing /home/cermak/src/MOM6.devrob/src/parameterizations/vertical/MOM_CVMix_shear.F90...
Parsing file /home/cermak/src/MOM6.devrob/src/parameterizations/vertical/MOM_CVMix_shear.F90...
Preprocessing /home/cermak/src/MOM6.devrob/src/parameterizations/vertical/MOM_diabatic_aux.F90...
Parsing file /home/cermak/src/MOM6.devrob/src/parameterizations/vertical/MOM_diabatic_aux.F90...
Preprocessing /home/cermak/src/MOM6.devrob/src/parameterizations/vertical/MOM_diabatic_driver.F90...
Parsing file /home/cermak/src/MOM6.devrob/src/parameterizations/vertical/MOM_diabatic_driver.F90...
Preprocessing /home/cermak/src/MOM6.devrob/src/parameterizations/vertical/MOM_diapyc_energy_req.F90...
Parsing file /home/cermak/src/MOM6.devrob/src/parameterizations/vertical/MOM_diapyc_energy_req.F90...
Preprocessing /home/cermak/src/MOM6.devrob/src/parameterizations/vertical/MOM_energetic_PBL.F90...
Parsing file /home/cermak/src/MOM6.devrob/src/parameterizations/vertical/MOM_energetic_PBL.F90...
Preprocessing /home/cermak/src/MOM6.devrob/src/parameterizations/vertical/MOM_entrain_diffusive.F90...
Parsing file /home/cermak/src/MOM6.devrob/src/parameterizations/vertical/MOM_entrain_diffusive.F90...
Preprocessing /home/cermak/src/MOM6.devrob/src/parameterizations/vertical/MOM_full_convection.F90...
Parsing file /home/cermak/src/MOM6.devrob/src/parameterizations/vertical/MOM_full_convection.F90...
Preprocessing /home/cermak/src/MOM6.devrob/src/parameterizations/vertical/MOM_geothermal.F90...
Parsing file /home/cermak/src/MOM6.devrob/src/parameterizations/vertical/MOM_geothermal.F90...
Preprocessing /home/cermak/src/MOM6.devrob/src/parameterizations/vertical/MOM_internal_tide_input.F90...
Parsing file /home/cermak/src/MOM6.devrob/src/parameterizations/vertical/MOM_internal_tide_input.F90...
Preprocessing /home/cermak/src/MOM6.devrob/src/parameterizations/vertical/MOM_kappa_shear.F90...
Parsing file /home/cermak/src/MOM6.devrob/src/parameterizations/vertical/MOM_kappa_shear.F90...
Preprocessing /home/cermak/src/MOM6.devrob/src/parameterizations/vertical/MOM_opacity.F90...
Parsing file /home/cermak/src/MOM6.devrob/src/parameterizations/vertical/MOM_opacity.F90...
Preprocessing /home/cermak/src/MOM6.devrob/src/parameterizations/vertical/MOM_regularize_layers.F90...
Parsing file /home/cermak/src/MOM6.devrob/src/parameterizations/vertical/MOM_regularize_layers.F90...
Preprocessing /home/cermak/src/MOM6.devrob/src/parameterizations/vertical/MOM_set_diffusivity.F90...
Parsing file /home/cermak/src/MOM6.devrob/src/parameterizations/vertical/MOM_set_diffusivity.F90...
Preprocessing /home/cermak/src/MOM6.devrob/src/parameterizations/vertical/MOM_set_viscosity.F90...
Parsing file /home/cermak/src/MOM6.devrob/src/parameterizations/vertical/MOM_set_viscosity.F90...
Preprocessing /home/cermak/src/MOM6.devrob/src/parameterizations/vertical/MOM_sponge.F90...
Parsing file /home/cermak/src/MOM6.devrob/src/parameterizations/vertical/MOM_sponge.F90...
Preprocessing /home/cermak/src/MOM6.devrob/src/parameterizations/vertical/MOM_tidal_mixing.F90...
Parsing file /home/cermak/src/MOM6.devrob/src/parameterizations/vertical/MOM_tidal_mixing.F90...
Preprocessing /home/cermak/src/MOM6.devrob/src/parameterizations/vertical/MOM_vert_friction.F90...
Parsing file /home/cermak/src/MOM6.devrob/src/parameterizations/vertical/MOM_vert_friction.F90...
Preprocessing /home/cermak/src/MOM6.devrob/src/tracer/_Advection.dox...
Parsing file /home/cermak/src/MOM6.devrob/src/tracer/_Advection.dox...
Preprocessing /home/cermak/src/MOM6.devrob/src/tracer/_Discrete_tracer.dox...
Parsing file /home/cermak/src/MOM6.devrob/src/tracer/_Discrete_tracer.dox...
Preprocessing /home/cermak/src/MOM6.devrob/src/tracer/_Horizontal_diffusion.dox...
Parsing file /home/cermak/src/MOM6.devrob/src/tracer/_Horizontal_diffusion.dox...
Preprocessing /home/cermak/src/MOM6.devrob/src/tracer/_Passive_tracer.dox...
Parsing file /home/cermak/src/MOM6.devrob/src/tracer/_Passive_tracer.dox...
Preprocessing /home/cermak/src/MOM6.devrob/src/tracer/_Tracer_fluxes.dox...
Parsing file /home/cermak/src/MOM6.devrob/src/tracer/_Tracer_fluxes.dox...
Preprocessing /home/cermak/src/MOM6.devrob/src/tracer/_Tracer_timestep.dox...
Parsing file /home/cermak/src/MOM6.devrob/src/tracer/_Tracer_timestep.dox...
Preprocessing /home/cermak/src/MOM6.devrob/src/tracer/_Tracer_Transport.dox...
Parsing file /home/cermak/src/MOM6.devrob/src/tracer/_Tracer_Transport.dox...
Preprocessing /home/cermak/src/MOM6.devrob/src/tracer/_Vertical_diffusion.dox...
Parsing file /home/cermak/src/MOM6.devrob/src/tracer/_Vertical_diffusion.dox...
Preprocessing /home/cermak/src/MOM6.devrob/src/tracer/advection_test_tracer.F90...
Parsing file /home/cermak/src/MOM6.devrob/src/tracer/advection_test_tracer.F90...
Preprocessing /home/cermak/src/MOM6.devrob/src/tracer/boundary_impulse_tracer.F90...
Parsing file /home/cermak/src/MOM6.devrob/src/tracer/boundary_impulse_tracer.F90...
Preprocessing /home/cermak/src/MOM6.devrob/src/tracer/DOME_tracer.F90...
Parsing file /home/cermak/src/MOM6.devrob/src/tracer/DOME_tracer.F90...
Preprocessing /home/cermak/src/MOM6.devrob/src/tracer/dye_example.F90...
Parsing file /home/cermak/src/MOM6.devrob/src/tracer/dye_example.F90...
Preprocessing /home/cermak/src/MOM6.devrob/src/tracer/dyed_obc_tracer.F90...
Parsing file /home/cermak/src/MOM6.devrob/src/tracer/dyed_obc_tracer.F90...
Preprocessing /home/cermak/src/MOM6.devrob/src/tracer/ideal_age_example.F90...
Parsing file /home/cermak/src/MOM6.devrob/src/tracer/ideal_age_example.F90...
Preprocessing /home/cermak/src/MOM6.devrob/src/tracer/ISOMIP_tracer.F90...
Parsing file /home/cermak/src/MOM6.devrob/src/tracer/ISOMIP_tracer.F90...
Preprocessing /home/cermak/src/MOM6.devrob/src/tracer/MOM_generic_tracer.F90...
Parsing file /home/cermak/src/MOM6.devrob/src/tracer/MOM_generic_tracer.F90...
Preprocessing /home/cermak/src/MOM6.devrob/src/tracer/MOM_lateral_boundary_diffusion.F90...
Parsing file /home/cermak/src/MOM6.devrob/src/tracer/MOM_lateral_boundary_diffusion.F90...
Preprocessing /home/cermak/src/MOM6.devrob/src/tracer/MOM_neutral_diffusion.F90...
Parsing file /home/cermak/src/MOM6.devrob/src/tracer/MOM_neutral_diffusion.F90...
Preprocessing /home/cermak/src/MOM6.devrob/src/tracer/MOM_OCMIP2_CFC.F90...
Parsing file /home/cermak/src/MOM6.devrob/src/tracer/MOM_OCMIP2_CFC.F90...
Preprocessing /home/cermak/src/MOM6.devrob/src/tracer/MOM_offline_aux.F90...
Parsing file /home/cermak/src/MOM6.devrob/src/tracer/MOM_offline_aux.F90...
Preprocessing /home/cermak/src/MOM6.devrob/src/tracer/MOM_offline_main.F90...
Parsing file /home/cermak/src/MOM6.devrob/src/tracer/MOM_offline_main.F90...
Preprocessing /home/cermak/src/MOM6.devrob/src/tracer/MOM_tracer_advect.F90...
Parsing file /home/cermak/src/MOM6.devrob/src/tracer/MOM_tracer_advect.F90...
Preprocessing /home/cermak/src/MOM6.devrob/src/tracer/MOM_tracer_diabatic.F90...
Parsing file /home/cermak/src/MOM6.devrob/src/tracer/MOM_tracer_diabatic.F90...
Preprocessing /home/cermak/src/MOM6.devrob/src/tracer/MOM_tracer_flow_control.F90...
Parsing file /home/cermak/src/MOM6.devrob/src/tracer/MOM_tracer_flow_control.F90...
Preprocessing /home/cermak/src/MOM6.devrob/src/tracer/MOM_tracer_hor_diff.F90...
Parsing file /home/cermak/src/MOM6.devrob/src/tracer/MOM_tracer_hor_diff.F90...
Preprocessing /home/cermak/src/MOM6.devrob/src/tracer/MOM_tracer_registry.F90...
Parsing file /home/cermak/src/MOM6.devrob/src/tracer/MOM_tracer_registry.F90...
Preprocessing /home/cermak/src/MOM6.devrob/src/tracer/MOM_tracer_Z_init.F90...
Parsing file /home/cermak/src/MOM6.devrob/src/tracer/MOM_tracer_Z_init.F90...
Preprocessing /home/cermak/src/MOM6.devrob/src/tracer/oil_tracer.F90...
Parsing file /home/cermak/src/MOM6.devrob/src/tracer/oil_tracer.F90...
Preprocessing /home/cermak/src/MOM6.devrob/src/tracer/pseudo_salt_tracer.F90...
Parsing file /home/cermak/src/MOM6.devrob/src/tracer/pseudo_salt_tracer.F90...
Preprocessing /home/cermak/src/MOM6.devrob/src/tracer/RGC_tracer.F90...
Parsing file /home/cermak/src/MOM6.devrob/src/tracer/RGC_tracer.F90...
Preprocessing /home/cermak/src/MOM6.devrob/src/tracer/tracer_example.F90...
Parsing file /home/cermak/src/MOM6.devrob/src/tracer/tracer_example.F90...
Preprocessing /home/cermak/src/MOM6.devrob/src/user/adjustment_initialization.F90...
Parsing file /home/cermak/src/MOM6.devrob/src/user/adjustment_initialization.F90...
Preprocessing /home/cermak/src/MOM6.devrob/src/user/baroclinic_zone_initialization.F90...
Parsing file /home/cermak/src/MOM6.devrob/src/user/baroclinic_zone_initialization.F90...
Preprocessing /home/cermak/src/MOM6.devrob/src/user/basin_builder.F90...
Parsing file /home/cermak/src/MOM6.devrob/src/user/basin_builder.F90...
Preprocessing /home/cermak/src/MOM6.devrob/src/user/benchmark_initialization.F90...
Parsing file /home/cermak/src/MOM6.devrob/src/user/benchmark_initialization.F90...
Preprocessing /home/cermak/src/MOM6.devrob/src/user/BFB_initialization.F90...
Parsing file /home/cermak/src/MOM6.devrob/src/user/BFB_initialization.F90...
Preprocessing /home/cermak/src/MOM6.devrob/src/user/BFB_surface_forcing.F90...
Parsing file /home/cermak/src/MOM6.devrob/src/user/BFB_surface_forcing.F90...
Preprocessing /home/cermak/src/MOM6.devrob/src/user/circle_obcs_initialization.F90...
Parsing file /home/cermak/src/MOM6.devrob/src/user/circle_obcs_initialization.F90...
Preprocessing /home/cermak/src/MOM6.devrob/src/user/dense_water_initialization.F90...
Parsing file /home/cermak/src/MOM6.devrob/src/user/dense_water_initialization.F90...
Preprocessing /home/cermak/src/MOM6.devrob/src/user/DOME2d_initialization.F90...
Parsing file /home/cermak/src/MOM6.devrob/src/user/DOME2d_initialization.F90...
Preprocessing /home/cermak/src/MOM6.devrob/src/user/DOME_initialization.F90...
Parsing file /home/cermak/src/MOM6.devrob/src/user/DOME_initialization.F90...
Preprocessing /home/cermak/src/MOM6.devrob/src/user/dumbbell_initialization.F90...
Parsing file /home/cermak/src/MOM6.devrob/src/user/dumbbell_initialization.F90...
Preprocessing /home/cermak/src/MOM6.devrob/src/user/dumbbell_surface_forcing.F90...
Parsing file /home/cermak/src/MOM6.devrob/src/user/dumbbell_surface_forcing.F90...
Preprocessing /home/cermak/src/MOM6.devrob/src/user/dyed_channel_initialization.F90...
Parsing file /home/cermak/src/MOM6.devrob/src/user/dyed_channel_initialization.F90...
Preprocessing /home/cermak/src/MOM6.devrob/src/user/dyed_obcs_initialization.F90...
Parsing file /home/cermak/src/MOM6.devrob/src/user/dyed_obcs_initialization.F90...
Preprocessing /home/cermak/src/MOM6.devrob/src/user/external_gwave_initialization.F90...
Parsing file /home/cermak/src/MOM6.devrob/src/user/external_gwave_initialization.F90...
Preprocessing /home/cermak/src/MOM6.devrob/src/user/Idealized_Hurricane.F90...
Parsing file /home/cermak/src/MOM6.devrob/src/user/Idealized_Hurricane.F90...
Preprocessing /home/cermak/src/MOM6.devrob/src/user/ISOMIP_initialization.F90...
Parsing file /home/cermak/src/MOM6.devrob/src/user/ISOMIP_initialization.F90...
Preprocessing /home/cermak/src/MOM6.devrob/src/user/Kelvin_initialization.F90...
Parsing file /home/cermak/src/MOM6.devrob/src/user/Kelvin_initialization.F90...
Preprocessing /home/cermak/src/MOM6.devrob/src/user/lock_exchange_initialization.F90...
Parsing file /home/cermak/src/MOM6.devrob/src/user/lock_exchange_initialization.F90...
Preprocessing /home/cermak/src/MOM6.devrob/src/user/MOM_controlled_forcing.F90...
Parsing file /home/cermak/src/MOM6.devrob/src/user/MOM_controlled_forcing.F90...
Preprocessing /home/cermak/src/MOM6.devrob/src/user/MOM_wave_interface.F90...
Parsing file /home/cermak/src/MOM6.devrob/src/user/MOM_wave_interface.F90...
Preprocessing /home/cermak/src/MOM6.devrob/src/user/Neverworld_initialization.F90...
Parsing file /home/cermak/src/MOM6.devrob/src/user/Neverworld_initialization.F90...
Preprocessing /home/cermak/src/MOM6.devrob/src/user/Phillips_initialization.F90...
Parsing file /home/cermak/src/MOM6.devrob/src/user/Phillips_initialization.F90...
Preprocessing /home/cermak/src/MOM6.devrob/src/user/RGC_initialization.F90...
Parsing file /home/cermak/src/MOM6.devrob/src/user/RGC_initialization.F90...
Preprocessing /home/cermak/src/MOM6.devrob/src/user/Rossby_front_2d_initialization.F90...
Parsing file /home/cermak/src/MOM6.devrob/src/user/Rossby_front_2d_initialization.F90...
Preprocessing /home/cermak/src/MOM6.devrob/src/user/SCM_CVMix_tests.F90...
Parsing file /home/cermak/src/MOM6.devrob/src/user/SCM_CVMix_tests.F90...
Preprocessing /home/cermak/src/MOM6.devrob/src/user/seamount_initialization.F90...
Parsing file /home/cermak/src/MOM6.devrob/src/user/seamount_initialization.F90...
Preprocessing /home/cermak/src/MOM6.devrob/src/user/shelfwave_initialization.F90...
Parsing file /home/cermak/src/MOM6.devrob/src/user/shelfwave_initialization.F90...
Preprocessing /home/cermak/src/MOM6.devrob/src/user/sloshing_initialization.F90...
Parsing file /home/cermak/src/MOM6.devrob/src/user/sloshing_initialization.F90...
Preprocessing /home/cermak/src/MOM6.devrob/src/user/soliton_initialization.F90...
Parsing file /home/cermak/src/MOM6.devrob/src/user/soliton_initialization.F90...
Preprocessing /home/cermak/src/MOM6.devrob/src/user/supercritical_initialization.F90...
Parsing file /home/cermak/src/MOM6.devrob/src/user/supercritical_initialization.F90...
Preprocessing /home/cermak/src/MOM6.devrob/src/user/tidal_bay_initialization.F90...
Parsing file /home/cermak/src/MOM6.devrob/src/user/tidal_bay_initialization.F90...
Preprocessing /home/cermak/src/MOM6.devrob/src/user/user_change_diffusivity.F90...
Parsing file /home/cermak/src/MOM6.devrob/src/user/user_change_diffusivity.F90...
Preprocessing /home/cermak/src/MOM6.devrob/src/user/user_initialization.F90...
Parsing file /home/cermak/src/MOM6.devrob/src/user/user_initialization.F90...
Preprocessing /home/cermak/src/MOM6.devrob/src/user/user_revise_forcing.F90...
Parsing file /home/cermak/src/MOM6.devrob/src/user/user_revise_forcing.F90...
Reading /home/cermak/src/MOM6.devrob/docs/front_page.md...
Preprocessing /home/cermak/src/MOM6.devrob/config_src/solo_driver/atmos_ocean_fluxes.F90...
Parsing file /home/cermak/src/MOM6.devrob/config_src/solo_driver/atmos_ocean_fluxes.F90...
Preprocessing /home/cermak/src/MOM6.devrob/config_src/solo_driver/MESO_surface_forcing.F90...
Parsing file /home/cermak/src/MOM6.devrob/config_src/solo_driver/MESO_surface_forcing.F90...
Preprocessing /home/cermak/src/MOM6.devrob/config_src/solo_driver/MOM_driver.F90...
Parsing file /home/cermak/src/MOM6.devrob/config_src/solo_driver/MOM_driver.F90...
Preprocessing /home/cermak/src/MOM6.devrob/config_src/solo_driver/MOM_surface_forcing.F90...
Parsing file /home/cermak/src/MOM6.devrob/config_src/solo_driver/MOM_surface_forcing.F90...
Preprocessing /home/cermak/src/MOM6.devrob/config_src/solo_driver/user_surface_forcing.F90...
Parsing file /home/cermak/src/MOM6.devrob/config_src/solo_driver/user_surface_forcing.F90...
Preprocessing /home/cermak/src/MOM6.devrob/config_src/dynamic_symmetric/MOM_memory.h...
Parsing file /home/cermak/src/MOM6.devrob/config_src/dynamic_symmetric/MOM_memory.h...
Preprocessing /home/cermak/src/MOM6.devrob/config_src/external/GFDL_ocean_BGC/FMS_coupler_util.F90...
Parsing file /home/cermak/src/MOM6.devrob/config_src/external/GFDL_ocean_BGC/FMS_coupler_util.F90...
Preprocessing /home/cermak/src/MOM6.devrob/config_src/external/GFDL_ocean_BGC/generic_tracer.F90...
Parsing file /home/cermak/src/MOM6.devrob/config_src/external/GFDL_ocean_BGC/generic_tracer.F90...
Preprocessing /home/cermak/src/MOM6.devrob/config_src/external/GFDL_ocean_BGC/generic_tracer_utils.F90...
Parsing file /home/cermak/src/MOM6.devrob/config_src/external/GFDL_ocean_BGC/generic_tracer_utils.F90...
Reading /home/cermak/src/MOM6.devrob/config_src/external/GFDL_ocean_BGC/README.md...
Reading /home/cermak/src/MOM6.devrob/config_src/external/ODA_hooks/kdtree.f90...
Parsing file /home/cermak/src/MOM6.devrob/config_src/external/ODA_hooks/kdtree.f90...
Preprocessing /home/cermak/src/MOM6.devrob/config_src/external/ODA_hooks/ocean_da_core.F90...
Parsing file /home/cermak/src/MOM6.devrob/config_src/external/ODA_hooks/ocean_da_core.F90...
Preprocessing /home/cermak/src/MOM6.devrob/config_src/external/ODA_hooks/ocean_da_types.F90...
Parsing file /home/cermak/src/MOM6.devrob/config_src/external/ODA_hooks/ocean_da_types.F90...
Reading /home/cermak/src/MOM6.devrob/config_src/external/ODA_hooks/README.md...
Preprocessing /home/cermak/src/MOM6.devrob/config_src/external/ODA_hooks/write_ocean_obs.F90...
Parsing file /home/cermak/src/MOM6.devrob/config_src/external/ODA_hooks/write_ocean_obs.F90...
Reading /home/cermak/src/MOM6.devrob/config_src/external/README.md...
Preprocessing /home/cermak/src/MOM6.devrob/config_src/coupled_driver/MOM_surface_forcing_gfdl.F90...
Parsing file /home/cermak/src/MOM6.devrob/config_src/coupled_driver/MOM_surface_forcing_gfdl.F90...
Preprocessing /home/cermak/src/MOM6.devrob/config_src/coupled_driver/ocean_model_MOM.F90...
Parsing file /home/cermak/src/MOM6.devrob/config_src/coupled_driver/ocean_model_MOM.F90...
Building group list...
Building directory list...
Building namespace list...
Building file list...
Building class list...
Associating documentation with classes...
Computing nesting relations for classes...
Building example list...
Searching for enumerations...
Searching for documented typedefs...
Searching for members imported via using declarations...
Searching for included using directives...
Searching for documented variables...
Building interface member list...
Building member list...
Searching for friends...
Searching for documented defines...
Computing class inheritance relations...
Computing class usage relations...
Flushing cached template relations that have become invalid...
Computing class relations...
Add enum values to enums...
Searching for member function documentation...
Creating members for template instances...
Building page list...
Search for main page...
Computing page relations...
Determining the scope of groups...
Sorting lists...
Freeing entry tree
Determining which enums are documented
Computing member relations...
Building full member lists recursively...
Adding members to member groups.
Distributing member group documentation.
Computing member references...
Inheriting documentation...
Generating disk names...
Adding source references...
Adding xrefitems...
Sorting member lists...
Computing dependencies between directories...
Generating citations page...
Counting data structures...
Resolving user defined references...
Finding anchors and sections in the documentation...
Transferring function references...
Combining using relations...
Adding members to index pages...
Generating style sheet...
Generating search indices...
Generating example documentation...
Generating file sources...
Generating code for file /home/cermak/src/MOM6.devrob/config_src/coupled_driver/MOM_surface_forcing_gfdl.F90...
Generating code for file /home/cermak/src/MOM6.devrob/config_src/coupled_driver/ocean_model_MOM.F90...
Generating code for file /home/cermak/src/MOM6.devrob/config_src/dynamic_symmetric/MOM_memory.h...
Generating code for file /home/cermak/src/MOM6.devrob/config_src/external/GFDL_ocean_BGC/FMS_coupler_util.F90...
Generating code for file /home/cermak/src/MOM6.devrob/config_src/external/GFDL_ocean_BGC/generic_tracer.F90...
Generating code for file /home/cermak/src/MOM6.devrob/config_src/external/GFDL_ocean_BGC/generic_tracer_utils.F90...
Parsing code for file /home/cermak/src/MOM6.devrob/config_src/external/GFDL_ocean_BGC/README.md...
Parsing code for file /home/cermak/src/MOM6.devrob/config_src/external/ODA_hooks/README.md...
Parsing code for file /home/cermak/src/MOM6.devrob/config_src/external/README.md...
Generating code for file /home/cermak/src/MOM6.devrob/config_src/external/ODA_hooks/kdtree.f90...
Generating code for file /home/cermak/src/MOM6.devrob/config_src/external/ODA_hooks/ocean_da_core.F90...
Generating code for file /home/cermak/src/MOM6.devrob/config_src/external/ODA_hooks/ocean_da_types.F90...
Generating code for file /home/cermak/src/MOM6.devrob/config_src/external/ODA_hooks/write_ocean_obs.F90...
Generating code for file /home/cermak/src/MOM6.devrob/config_src/solo_driver/atmos_ocean_fluxes.F90...
Generating code for file /home/cermak/src/MOM6.devrob/config_src/solo_driver/MESO_surface_forcing.F90...
Generating code for file /home/cermak/src/MOM6.devrob/config_src/solo_driver/MOM_driver.F90...
Generating code for file /home/cermak/src/MOM6.devrob/config_src/solo_driver/MOM_surface_forcing.F90...
Generating code for file /home/cermak/src/MOM6.devrob/config_src/solo_driver/user_surface_forcing.F90...
Parsing code for file front_page.md...
Parsing code for file /home/cermak/src/MOM6.devrob/src/ALE/_ALE.dox...
Parsing code for file /home/cermak/src/MOM6.devrob/src/ALE/_ALE_timestep.dox...
Generating code for file /home/cermak/src/MOM6.devrob/src/ALE/coord_adapt.F90...
Generating code for file /home/cermak/src/MOM6.devrob/src/ALE/coord_hycom.F90...
Generating code for file /home/cermak/src/MOM6.devrob/src/ALE/coord_rho.F90...
Generating code for file /home/cermak/src/MOM6.devrob/src/ALE/coord_sigma.F90...
Generating code for file /home/cermak/src/MOM6.devrob/src/ALE/coord_slight.F90...
Generating code for file /home/cermak/src/MOM6.devrob/src/ALE/coord_zlike.F90...
Generating code for file /home/cermak/src/MOM6.devrob/src/ALE/MOM_ALE.F90...
Generating code for file /home/cermak/src/MOM6.devrob/src/ALE/MOM_regridding.F90...
Generating code for file /home/cermak/src/MOM6.devrob/src/ALE/MOM_remapping.F90...
Generating code for file /home/cermak/src/MOM6.devrob/src/ALE/P1M_functions.F90...
Generating code for file /home/cermak/src/MOM6.devrob/src/ALE/P3M_functions.F90...
Generating code for file /home/cermak/src/MOM6.devrob/src/ALE/PCM_functions.F90...
Generating code for file /home/cermak/src/MOM6.devrob/src/ALE/PLM_functions.F90...
Generating code for file /home/cermak/src/MOM6.devrob/src/ALE/polynomial_functions.F90...
Generating code for file /home/cermak/src/MOM6.devrob/src/ALE/PPM_functions.F90...
Generating code for file /home/cermak/src/MOM6.devrob/src/ALE/PQM_functions.F90...
Generating code for file /home/cermak/src/MOM6.devrob/src/ALE/regrid_consts.F90...
Generating code for file /home/cermak/src/MOM6.devrob/src/ALE/regrid_edge_values.F90...
Generating code for file /home/cermak/src/MOM6.devrob/src/ALE/regrid_interp.F90...
Generating code for file /home/cermak/src/MOM6.devrob/src/ALE/regrid_solvers.F90...
Parsing code for file /home/cermak/src/MOM6.devrob/src/core/_Baroclinic_Momentum.dox...
Parsing code for file /home/cermak/src/MOM6.devrob/src/core/_Barotropic_Baroclinic_Coupling.dox...
Parsing code for file /home/cermak/src/MOM6.devrob/src/core/_Barotropic_Momentum.dox...
Parsing code for file /home/cermak/src/MOM6.devrob/src/core/_Discrete_Coriolis.dox...
Parsing code for file /home/cermak/src/MOM6.devrob/src/core/_Discrete_grids.dox...
Parsing code for file /home/cermak/src/MOM6.devrob/src/core/_Discrete_OBC.dox...
Parsing code for file /home/cermak/src/MOM6.devrob/src/core/_Discrete_PG.dox...
Parsing code for file /home/cermak/src/MOM6.devrob/src/core/_Energetic_consistancy.dox...
Parsing code for file /home/cermak/src/MOM6.devrob/src/core/_Finite_difference.dox...
Parsing code for file /home/cermak/src/MOM6.devrob/src/core/_General_coordinate.dox...
Parsing code for file /home/cermak/src/MOM6.devrob/src/core/_Governing.dox...
Parsing code for file /home/cermak/src/MOM6.devrob/src/core/_Notation.dox...
Parsing code for file /home/cermak/src/MOM6.devrob/src/core/_PPM.dox...
Parsing code for file /home/cermak/src/MOM6.devrob/src/core/_Sea_ice.dox...
Parsing code for file /home/cermak/src/MOM6.devrob/src/core/_Solar_radiation.dox...
Parsing code for file /home/cermak/src/MOM6.devrob/src/core/_Specifics.dox...
Parsing code for file /home/cermak/src/MOM6.devrob/src/core/_Timestep_Overview.dox...
Generating code for file /home/cermak/src/MOM6.devrob/src/core/MOM.F90...
Generating code for file /home/cermak/src/MOM6.devrob/src/core/MOM_barotropic.F90...
Generating code for file /home/cermak/src/MOM6.devrob/src/core/MOM_boundary_update.F90...
Generating code for file /home/cermak/src/MOM6.devrob/src/core/MOM_checksum_packages.F90...
Generating code for file /home/cermak/src/MOM6.devrob/src/core/MOM_continuity.F90...
Generating code for file /home/cermak/src/MOM6.devrob/src/core/MOM_continuity_PPM.F90...
Generating code for file /home/cermak/src/MOM6.devrob/src/core/MOM_CoriolisAdv.F90...
Generating code for file /home/cermak/src/MOM6.devrob/src/core/MOM_density_integrals.F90...
Generating code for file /home/cermak/src/MOM6.devrob/src/core/MOM_dynamics_split_RK2.F90...
Generating code for file /home/cermak/src/MOM6.devrob/src/core/MOM_dynamics_unsplit.F90...
Generating code for file /home/cermak/src/MOM6.devrob/src/core/MOM_dynamics_unsplit_RK2.F90...
Generating code for file /home/cermak/src/MOM6.devrob/src/core/MOM_forcing_type.F90...
Generating code for file /home/cermak/src/MOM6.devrob/src/core/MOM_grid.F90...
Generating code for file /home/cermak/src/MOM6.devrob/src/core/MOM_interface_heights.F90...
Generating code for file /home/cermak/src/MOM6.devrob/src/core/MOM_isopycnal_slopes.F90...
Generating code for file /home/cermak/src/MOM6.devrob/src/core/MOM_open_boundary.F90...
Generating code for file /home/cermak/src/MOM6.devrob/src/core/MOM_PressureForce.F90...
Generating code for file /home/cermak/src/MOM6.devrob/src/core/MOM_PressureForce_FV.F90...
Generating code for file /home/cermak/src/MOM6.devrob/src/core/MOM_PressureForce_Montgomery.F90...
Generating code for file /home/cermak/src/MOM6.devrob/src/core/MOM_transcribe_grid.F90...
Generating code for file /home/cermak/src/MOM6.devrob/src/core/MOM_unit_tests.F90...
Generating code for file /home/cermak/src/MOM6.devrob/src/core/MOM_variables.F90...
Generating code for file /home/cermak/src/MOM6.devrob/src/core/MOM_verticalGrid.F90...
Generating code for file /home/cermak/src/MOM6.devrob/src/diagnostics/MOM_debugging.F90...
Generating code for file /home/cermak/src/MOM6.devrob/src/diagnostics/MOM_diagnostics.F90...
Generating code for file /home/cermak/src/MOM6.devrob/src/diagnostics/MOM_obsolete_diagnostics.F90...
Generating code for file /home/cermak/src/MOM6.devrob/src/diagnostics/MOM_obsolete_params.F90...
Generating code for file /home/cermak/src/MOM6.devrob/src/diagnostics/MOM_PointAccel.F90...
Generating code for file /home/cermak/src/MOM6.devrob/src/diagnostics/MOM_sum_output.F90...
Generating code for file /home/cermak/src/MOM6.devrob/src/diagnostics/MOM_wave_speed.F90...
Generating code for file /home/cermak/src/MOM6.devrob/src/diagnostics/MOM_wave_structure.F90...
Parsing code for file /home/cermak/src/MOM6.devrob/src/equation_of_state/_Equation_of_State.dox...
Generating code for file /home/cermak/src/MOM6.devrob/src/equation_of_state/MOM_EOS.F90...
Generating code for file /home/cermak/src/MOM6.devrob/src/equation_of_state/MOM_EOS_linear.F90...
Generating code for file /home/cermak/src/MOM6.devrob/src/equation_of_state/MOM_EOS_NEMO.F90...
Generating code for file /home/cermak/src/MOM6.devrob/src/equation_of_state/MOM_EOS_TEOS10.F90...
Generating code for file /home/cermak/src/MOM6.devrob/src/equation_of_state/MOM_EOS_UNESCO.F90...
Generating code for file /home/cermak/src/MOM6.devrob/src/equation_of_state/MOM_EOS_Wright.F90...
Generating code for file /home/cermak/src/MOM6.devrob/src/equation_of_state/MOM_TFreeze.F90...
Parsing code for file /home/cermak/src/MOM6.devrob/src/framework/_Diagnostics.dox...
Parsing code for file /home/cermak/src/MOM6.devrob/src/framework/_Domain_decomposition.dox...
Parsing code for file /home/cermak/src/MOM6.devrob/src/framework/_Global_grids.dox...
Parsing code for file /home/cermak/src/MOM6.devrob/src/framework/_Horizontal_indexing.dox...
Parsing code for file /home/cermak/src/MOM6.devrob/src/framework/_Parallel_IO.dox...
Parsing code for file /home/cermak/src/MOM6.devrob/src/framework/_Regional_grids.dox...
Parsing code for file /home/cermak/src/MOM6.devrob/src/framework/_Runtime_parameter_system.dox...
Parsing code for file /home/cermak/src/MOM6.devrob/src/framework/_Testing.dox...
Parsing code for file /home/cermak/src/MOM6.devrob/src/framework/_Vertical_grids.dox...
Generating code for file /home/cermak/src/MOM6.devrob/src/framework/MOM_array_transform.F90...
Generating code for file /home/cermak/src/MOM6.devrob/src/framework/MOM_checksums.F90...
Generating code for file /home/cermak/src/MOM6.devrob/src/framework/MOM_coms.F90...
Generating code for file /home/cermak/src/MOM6.devrob/src/framework/MOM_constants.F90...
Generating code for file /home/cermak/src/MOM6.devrob/src/framework/MOM_cpu_clock.F90...
Generating code for file /home/cermak/src/MOM6.devrob/src/framework/MOM_diag_manager_wrapper.F90...
Generating code for file /home/cermak/src/MOM6.devrob/src/framework/MOM_diag_mediator.F90...
Generating code for file /home/cermak/src/MOM6.devrob/src/framework/MOM_diag_remap.F90...
Generating code for file /home/cermak/src/MOM6.devrob/src/framework/MOM_diag_vkernels.F90...
Generating code for file /home/cermak/src/MOM6.devrob/src/framework/MOM_document.F90...
Generating code for file /home/cermak/src/MOM6.devrob/src/framework/MOM_domains.F90...
Generating code for file /home/cermak/src/MOM6.devrob/src/framework/MOM_dyn_horgrid.F90...
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lookup cache used 10531/65536 hits=83562 misses=14156
finished...
# Make sure we are in nonstopmode for generating the pdf by patching the Makefile
# Older doxygen versions do not have LATEX_CMD
grep -q "pdflatex refman" _build/doxygen_latex/Makefile && sed -i.bak 's/pdflatex refman/pdflatex -interaction=nonstopmode refman/' _build/doxygen_latex/Makefile
make: [Makefile:220: nortd_latex] Error 1 (ignored)
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Chapter 1.
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Chapter 16.
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Chapter 19.
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Chapter 21.
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Chapter 22.
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Chapter 23.
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Chapter 25.
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Chapter 27.
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Chapter 45.
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\T1/phv/m/n/10 so that $\OML/cmm/m/it/10 C[]\OMS/cmsy/m/n/10 j\OML/cmm/m/it/10 
U[]\OMS/cmsy/m/n/10 j$ \T1/phv/m/n/10 be-comes a Rayleigh bot-tom drag. Oth-er-
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is found by av-er-ag-ing the flow over

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Output written on refman.pdf (3966 pages, 14327668 bytes).
Transcript written on refman.log.
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