mom_variables::accel_diag_ptrs diffu diffv cau cav pfu pfv du_dt_visc dv_dt_visc du_dt_dia dv_dt_dia du_other dv_other gradkeu gradkev rv_x_v rv_x_u diag_hfrac_u diag_hfrac_v coord_adapt::adapt_cs nk coordinateresolution adapttimeratio adaptalpha adaptzoom adaptzoomcoeff adaptbuoycoeff adaptdrho0 adaptdomin advection_test_tracer::advection_test_tracer_cs ntr coupled_tracers tracer_ic_file time tr_reg tr land_val use_sponge tracers_may_reinit x_origin x_width y_origin y_width ind_tr diag restart_csp tr_desc mom_ale::ale_cs remap_uv_using_old_alg regrid_time_scale regridcs remapcs nk remap_after_initialization answers_2018 show_call_tree diag id_tracer_remap_tendency id_htracer_remap_tendency id_htracer_remap_tendency_2d do_tendency_diag id_dzregrid id_u_preale id_v_preale id_h_preale id_t_preale id_s_preale id_e_preale id_vert_remap_h id_vert_remap_h_tendency mom_ale_sponge::ale_sponge_cs nz nz_data isc iec jsc jec iscb iecb jscb jecb isd ied jsd jed num_col num_col_u num_col_v fldno sponge_uv col_i col_j col_i_u col_j_u col_i_v col_j_v iresttime_col iresttime_col_u iresttime_col_v var ref_val ref_val_u ref_val_v var_u var_v ref_h ref_hu ref_hv diag remap_cs remap_answers_2018 hor_regrid_answers_2018 time_varying_sponges spongedataongrid mom_forcing_type::allocate_forcing_type allocate_forcing_by_group allocate_forcing_by_ref mom_forcing_type::allocate_mech_forcing allocate_mech_forcing_by_group allocate_mech_forcing_from_ref mom_array_transform::allocate_rotated_array allocate_rotated_array_real_2d allocate_rotated_array_real_3d allocate_rotated_array_real_4d allocate_rotated_array_integer mom_hor_index::assignment(=) hit_assign mom_coms::assignment(=) efp_assign mom_tidal_forcing::astro_longitudes s h p n mom_diag_mediator::axes_grp id rank handles diag_cs x_cell_method y_cell_method v_cell_method nz vertical_coordinate_number is_h_point is_q_point is_u_point is_v_point is_layer is_interface is_native needs_remapping needs_interpolating downsample_level xyave_axes id_area id_volume mask2d mask3d dsamp mom_barotropic::barotropic_cs id_pfu_bt id_pfv_bt id_coru_bt id_corv_bt id_ubtforce id_vbtforce id_uaccel id_vaccel id_visc_rem_u id_visc_rem_v id_eta_cor id_ubt id_vbt id_eta_bt id_ubtav id_vbtav id_ubt_st id_vbt_st id_eta_st id_ubtdt id_vbtdt id_ubt_hifreq id_vbt_hifreq id_eta_hifreq id_uhbt_hifreq id_vhbt_hifreq id_eta_pred_hifreq id_gtotn id_gtots id_gtote id_gtotw id_uhbt id_frhatu id_vhbt id_frhatv id_frhatu1 id_frhatv1 id_btc_fa_u_ee id_btc_fa_u_e0 id_btc_fa_u_w0 id_btc_fa_u_ww id_btc_ubt_ee id_btc_ubt_ww id_btc_fa_v_nn id_btc_fa_v_n0 id_btc_fa_v_s0 id_btc_fa_v_ss id_btc_vbt_nn id_btc_vbt_ss id_btc_fa_u_rat0 id_btc_fa_v_rat0 id_btc_fa_h_rat0 id_uhbt0 id_vhbt0 frhatu frhatv idatu lin_drag_u ubt_ic ubtav idatv lin_drag_v vbt_ic vbtav eta_cor eta_cor_bound ua_polarity va_polarity bathyt iareat d_u_cor dy_cu idxcu d_v_cor dx_cv idycv q_d frhatu1 frhatv1 bt_obc dtbt dtbt_fraction dtbt_max dt_bt_filter nstep_last bebt split bound_bt_corr gradual_bt_ics sadourny integral_bt_cont nonlinear_continuity nonlin_cont_update_period bt_project_velocity nonlin_stress bt_coriolis_scale answers_2018 dynamic_psurf dmin_dyn_psurf ice_strength_length const_dyn_psurf tides g_extra hvel_scheme strong_drag linear_wave_drag linearized_bt_pv use_wide_halos clip_velocity debug debug_bt vel_underflow maxvel cfl_trunc maxcfl_bt_cont bt_cont_bounds visc_rem_u_uh0 adjust_bt_cont use_old_coriolis_bracket_bug time diag bt_domain debug_bt_hi tides_csp module_is_initialized isdw iedw jsdw jedw pass_q_dcor pass_gtot pass_tmp_uv pass_eta_bt_rem pass_force_hbt0_cor_ref pass_dat_uv pass_eta_ubt pass_etaav pass_ubt_cor pass_ubta_uhbta pass_e_anom mom_checksums::bchksum chksum_b_2d chksum_b_3d mom_checksums::bchksum_pair chksum_pair_b_2d chksum_pair_b_3d bfb_surface_forcing::bfb_surface_forcing_cs use_temperature restorebuoy rho0 g_earth flux_const gust_const sst_s sst_n lfrslat lfrnlat drho_dt diag mom_bkgnd_mixing::bkgnd_mixing_cs bryan_lewis_c1 bryan_lewis_c2 bryan_lewis_c3 bryan_lewis_c4 bckgrnd_vdc1 bckgrnd_vdc_eq bckgrnd_vdc_psim bckgrnd_vdc_banda kd_min kd omega n0_2omega prandtl_bkgnd kd_tanh_lat_scale kdml hmix kd_tanh_lat_fn bryan_lewis_diffusivity horiz_varying_background henyey_igw_background henyey_igw_background_new bulkmixedlayer kd_via_kdml_bug debug diag bkgnd_scheme_str boundary_impulse_tracer::boundary_impulse_tracer_cs ntr coupled_tracers time tr_reg tr tracers_may_reinit ind_tr nkml land_val kw_eff remaining_source_time diag restart_csp tr_desc mom_variables::bt_cont_type fa_u_ee fa_u_e0 fa_u_w0 fa_u_ww ubt_ww ubt_ee fa_v_nn fa_v_n0 fa_v_s0 fa_v_ss vbt_ss vbt_nn h_u h_v pass_polarity_bt pass_fa_uv mom_barotropic::bt_obc_type is_u_obc ie_u_obc js_u_obc je_u_obc is_v_obc ie_v_obc js_v_obc je_v_obc cg_u cg_v h_u h_v uhbt vhbt ubt_outer vbt_outer eta_outer_u eta_outer_v apply_u_obcs apply_v_obcs is_alloced pass_uv pass_uhvh pass_h pass_cg pass_eta_outer mom_bulk_mixed_layer::bulkmixedlayer_cs id_ml_depth id_tke_wind id_tke_mixing id_tke_ribulk id_tke_conv id_tke_pen_sw id_tke_mech_decay id_tke_conv_decay id_tke_conv_s2 id_pe_detrain id_pe_detrain2 id_h_mismatch id_hsfc_used id_hsfc_max id_hsfc_min nkml nkbl nsw mstar nstar nstar2 absorb_all_sw tke_decay bulk_ri_ml bulk_ri_convective hmix_min h_limit_fluxes ustar_min omega dt_ds_wt hbuffer_min hbuffer_rel_min bl_detrain_time bl_extrap_lim bl_split_rho_tol ml_resort ml_presort_nz_conv_adj omega_frac correct_absorption resolve_ekman time tke_diagnostics do_rivermix rivermix_depth limit_det lim_det_dh_sfc lim_det_dh_bathy use_river_heat_content use_calving_heat_content convect_mom_bug diag allowed_t_chg allowed_s_chg ml_depth diag_tke_wind diag_tke_ribulk diag_tke_conv diag_tke_pen_sw diag_tke_mech_decay diag_tke_conv_decay diag_tke_mixing diag_tke_conv_s2 diag_pe_detrain diag_pe_detrain2 allow_clocks_in_omp_loops pass_h_sum_hmbl_prev mom_eos::calculate_compress calculate_compress_scalar calculate_compress_array mom_eos::calculate_density calculate_density_scalar calculate_density_array calculate_density_1d calculate_stanley_density_scalar calculate_stanley_density_array calculate_stanley_density_1d mom_eos::calculate_density_derivs calculate_density_derivs_scalar calculate_density_derivs_array calculate_density_derivs_1d mom_eos_linear::calculate_density_derivs_linear calculate_density_derivs_scalar_linear calculate_density_derivs_array_linear mom_eos_nemo::calculate_density_derivs_nemo calculate_density_derivs_scalar_nemo calculate_density_derivs_array_nemo mom_eos_teos10::calculate_density_derivs_teos10 calculate_density_derivs_scalar_teos10 calculate_density_derivs_array_teos10 mom_eos_wright::calculate_density_derivs_wright calculate_density_derivs_scalar_wright calculate_density_derivs_array_wright mom_eos_linear::calculate_density_linear calculate_density_scalar_linear calculate_density_array_linear mom_eos_nemo::calculate_density_nemo calculate_density_scalar_nemo calculate_density_array_nemo mom_eos::calculate_density_second_derivs calculate_density_second_derivs_scalar calculate_density_second_derivs_array mom_eos_linear::calculate_density_second_derivs_linear calculate_density_second_derivs_scalar_linear calculate_density_second_derivs_array_linear mom_eos_teos10::calculate_density_second_derivs_teos10 calculate_density_second_derivs_scalar_teos10 calculate_density_second_derivs_array_teos10 mom_eos_wright::calculate_density_second_derivs_wright calculate_density_second_derivs_scalar_wright calculate_density_second_derivs_array_wright mom_eos_teos10::calculate_density_teos10 calculate_density_scalar_teos10 calculate_density_array_teos10 mom_eos_unesco::calculate_density_unesco calculate_density_scalar_unesco calculate_density_array_unesco mom_eos_wright::calculate_density_wright calculate_density_scalar_wright calculate_density_array_wright mom_eos::calculate_spec_vol calc_spec_vol_scalar calculate_spec_vol_array calc_spec_vol_1d mom_eos_linear::calculate_spec_vol_linear calculate_spec_vol_scalar_linear calculate_spec_vol_array_linear mom_eos_teos10::calculate_spec_vol_teos10 calculate_spec_vol_scalar_teos10 calculate_spec_vol_array_teos10 mom_eos_unesco::calculate_spec_vol_unesco calculate_spec_vol_scalar_unesco calculate_spec_vol_array_unesco mom_eos_wright::calculate_spec_vol_wright calculate_spec_vol_scalar_wright calculate_spec_vol_array_wright mom_eos::calculate_specific_vol_derivs calculate_spec_vol_derivs_array calc_spec_vol_derivs_1d mom_eos::calculate_tfreeze calculate_tfreeze_scalar calculate_tfreeze_array mom_tfreeze::calculate_tfreeze_linear calculate_tfreeze_linear_scalar calculate_tfreeze_linear_array mom_tfreeze::calculate_tfreeze_millero calculate_tfreeze_millero_scalar calculate_tfreeze_millero_array mom_tfreeze::calculate_tfreeze_teos10 calculate_tfreeze_teos10_scalar calculate_tfreeze_teos10_array mom_debugging::check_redundant check_redundant_vc3d check_redundant_vc2d mom_debugging::check_redundant_b check_redundant_vb3d check_redundant_vb2d check_redundant_sb3d check_redundant_sb2d mom_debugging::check_redundant_c check_redundant_vc3d check_redundant_vc2d mom_debugging::check_redundant_t check_redundant_st3d check_redundant_st2d check_redundant_vt3d check_redundant_vt2d mom_checksums::chk_sum_msg chk_sum_msg1 chk_sum_msg2 chk_sum_msg3 chk_sum_msg5 mom_checksums::chksum chksum1d chksum2d chksum3d mom_domains::clone_mom_domain clone_md_to_md clone_md_to_d2d mom_variables::cont_diag_ptrs uh vh uhgm vhgm diapyc_vel mom_continuity::continuity_cs continuity_scheme ppm_csp mom_continuity_ppm::continuity_ppm_cs diag upwind_1st monotonic simple_2nd tol_eta tol_vel tol_eta_aux cfl_limit_adjust aggress_adjust vol_cfl better_iter use_visc_rem_max marginal_faces regrid_consts::coordinateunits coordinateunitsi coordinateunitss mom_coriolisadv::coriolisadv_cs id_rv id_pv id_gkeu id_gkev id_rvxu id_rvxv id_hf_gkeu_2d id_hf_gkev_2d id_hf_rvxu_2d id_hf_rvxv_2d coriolis_scheme ke_scheme pv_adv_scheme f_eff_max_blend wt_lin_blend no_slip bound_coriolis coriolis_en_dis time diag mom_domains::create_group_pass create_var_group_pass_2d create_var_group_pass_3d create_vector_group_pass_2d create_vector_group_pass_3d mom_controlled_forcing::ctrl_forcing_cs avg_time heat_0 precip_0 heat_cyc precip_cyc avg_sst_anom avg_sss_anom avg_sss use_temperature do_integrated num_cycle heat_int_rate prec_int_rate heat_cyc_rate prec_cyc_rate len2 lam_heat lam_prec lam_cyc_heat lam_cyc_prec diag id_heat_0 mom_cvmix_conv::cvmix_conv_cs id_n2 id_kd_conv id_kv_conv kd_conv_const kv_conv_const bv_sqr_conv min_thickness debug diag mom_cvmix_ddiff::cvmix_ddiff_cs strat_param_max kappa_ddiff_s ddiff_exp1 ddiff_exp2 mol_diff kappa_ddiff_param1 kappa_ddiff_param2 kappa_ddiff_param3 min_thickness diff_conv_type debug mom_cvmix_shear::cvmix_shear_cs id_n2 id_s2 id_ri_grad id_kv id_kd id_ri_grad_smooth use_lmd94 use_pp81 smooth_ri ri_zero nu_zero kpp_exp n2 s2 ri_grad ri_grad_smooth mix_scheme diag mom_sum_output::depth_list depth area vol_below mom_diabatic_aux::diabatic_aux_cs do_rivermix rivermix_depth reclaim_frazil pressure_dependent_frazil ignore_fluxes_over_land use_river_heat_content use_calving_heat_content var_pen_sw sbc_chl chl_from_file time diag id_createdh id_brine_lay id_pensw_diag id_penswflux_diag id_nonpensw_diag id_chl createdh pensw_diag penswflux_diag nonpensw_diag mom_diabatic_driver::diabatic_cs id_cg1 id_cn id_wd id_ea id_eb id_dudt_dia id_dvdt_dia id_ea_s id_eb_s id_ea_t id_eb_t id_kd_heat id_kd_salt id_kd_interface id_kd_epbl id_tdif id_tadv id_sdif id_sadv id_mld_003 id_mld_0125 id_mld_user id_mlotstsq id_mld_en1 id_mld_en2 id_mld_en3 id_submln2 id_hf_dudt_dia_2d id_hf_dvdt_dia_2d id_u_predia id_v_predia id_h_predia id_t_predia id_s_predia id_e_predia id_diabatic_diff_temp_tend id_diabatic_diff_saln_tend id_diabatic_diff_heat_tend id_diabatic_diff_salt_tend id_diabatic_diff_heat_tend_2d id_diabatic_diff_salt_tend_2d id_diabatic_diff_h id_boundary_forcing_h id_boundary_forcing_h_tendency id_boundary_forcing_temp_tend id_boundary_forcing_saln_tend id_boundary_forcing_heat_tend id_boundary_forcing_salt_tend id_boundary_forcing_heat_tend_2d id_boundary_forcing_salt_tend_2d id_frazil_h id_frazil_temp_tend id_frazil_heat_tend id_frazil_heat_tend_2d use_legacy_diabatic bulkmixedlayer use_energetic_pbl use_kpp use_kappa_shear use_cvmix_shear use_cvmix_ddiff use_cvmix_conv double_diffuse use_sponge use_geothermal use_int_tides epbl_is_additive epbl_prandtl nmode uniform_test_cg usealealgorithm aggregate_fw_forcing ml_mix_first nkbl massless_match_targets mix_boundary_tracers kd_bbl_tr kd_min_tr minimum_forcing_depth evap_cfl_limit halo_ts_diff usekpp kppispassive debug debugconservation tracer_tridiag debug_energy_req diag mlddensitydifference dz_subml_n2 mld_en_vals diabatic_diff_tendency_diag boundary_forcing_tendency_diag frazil_tendency_diag frazil_heat_diag frazil_temp_diag diabatic_aux_csp entrain_diffusive_csp bulkmixedlayer_csp energetic_pbl_csp regularize_layers_csp geothermal_csp int_tide_csp int_tide_input_csp int_tide_input opacity_csp set_diff_csp sponge_csp ale_sponge_csp tracer_flow_csp optics kpp_csp cvmix_conv_csp diapyc_en_rec_csp pass_hold_eb_ea pass_kv diag_grids_prev kpp_nltheat kpp_nltscalar kpp_buoy_flux kpp_temp_flux kpp_salt_flux time mom_diag_mediator::diag_ctrl axesbl axestl axescul axescvl axesbi axesti axescui axescvi axesb1 axest1 axescu1 axescv1 mask3dtl mask3dbl mask3dcul mask3dcvl mask3dti mask3dbi mask3dcui mask3dcvi dsamp remap_axestl remap_axesbl remap_axescul remap_axescvl remap_axesti remap_axesbi remap_axescui remap_axescvi available_diag_doc_unit chksum_iounit diag_as_chksum grid_space_axes is ie js je isd ied jsd jed time_int time_end ave_enabled axeszi axeszl axesnull mask2dt mask2dbu mask2dcu mask2dcv diags next_free_diag_id missing_value num_diag_coords diag_remap_cs diag_grid_temp diag_grid_overridden remap_axeszl remap_axeszi h t s eqn_of_state g gv us volume_cell_measure_dm_id num_chksum_diags h_begin mom_diag_mediator::diag_dsamp mask2d mask3d mom_diag_mediator::diag_grid_storage num_diag_coords h_state diag_grids mom_diag_mediator::diag_grids_type h mom_diag_remap::diag_remap_ctrl configured initialized used vertical_coord vertical_coord_name diag_coord_name diag_module_suffix remap_cs regrid_cs nz h h_extensive interface_axes_id layer_axes_id answers_2018 mom_diag_mediator::diag_type in_use fms_diag_id fms_xyave_diag_id downsample_diag_id debug_str axes next conversion_factor v_extensive xyz_method mom_diag_mediator::diagcs_dsamp axesbl axestl axescul axescvl axesbi axesti axescui axescvi axesb1 axest1 axescu1 axescv1 remap_axestl remap_axesbl remap_axescul remap_axescvl remap_axesti remap_axesbi remap_axescui remap_axescvi mask3dtl mask3dbl mask3dcul mask3dcvl mask3dti mask3dbi mask3dcui mask3dcvi isc iec jsc jec isd ied jsd jed isg ieg jsg jeg isgb iegb jsgb jegb mask2dt mask2dbu mask2dcu mask2dcv mom_diagnostics::diagnostics_cs id_u id_v id_h id_e id_e_d id_du_dt id_dv_dt id_hf_du_dt_2d id_hf_dv_dt_2d id_col_ht id_dh_dt id_ke id_dkedt id_pe_to_ke id_ke_coradv id_ke_adv id_ke_visc id_ke_horvisc id_ke_dia id_uh_rlay id_vh_rlay id_uhgm_rlay id_vhgm_rlay id_h_rlay id_rd1 id_rml id_rcv id_cg1 id_cfl_cg1 id_cfl_cg1_x id_cfl_cg1_y id_cg_ebt id_rd_ebt id_p_ebt id_temp_int id_salt_int id_mass_wt id_col_mass id_masscello id_masso id_volcello id_tpot id_sprac id_tob id_sob id_thetaoga id_soga id_sosga id_tosga id_temp_layer_ave id_salt_layer_ave id_pbo id_thkcello id_rhoinsitu id_rhopot0 id_rhopot2 id_drho_dt id_drho_ds id_h_pre_sync mono_n2_column_fraction mono_n2_depth diag e e_d du_dt dv_dt dh_dt p_ebt h_rlay uh_rlay vh_rlay uhgm_rlay vhgm_rlay cg1 rd1 cfl_cg1 cfl_cg1_x cfl_cg1_y ke dke_dt pe_to_ke ke_coradv ke_adv ke_visc ke_horvisc ke_dia wave_speed_csp var_ptr deriv prev_val nlay num_time_deriv pass_ke_uv mom_diapyc_energy_req::diapyc_energy_req_cs id_ert id_erb id_erc id_erh id_kddt id_kd id_chct id_chcb id_chcc id_chch id_t0 id_tf id_s0 id_sf id_n2_0 id_n2_f id_h id_zint initialized test_kh_scaling colht_scaling use_test_kh_profile diag mom_set_diffusivity::diffusivity_diags n2_3d kd_user kd_bbl kd_work maxtke kd_bkgnd kv_bkgnd kt_extra ks_extra drho_rat tke_to_kd mom_get_input::directories restart_input_dir restart_output_dir output_directory input_filename mom_document::doc_param doc_param_none doc_param_logical doc_param_logical_array doc_param_int doc_param_int_array doc_param_real doc_param_real_array doc_param_char doc_param_time mom_document::doc_type unitall unitshort unitlayout unitdebugging filesareopen docfilebase complete minimal layout debugging definesyntax warnonconflicts commentcolumn max_line_len chain_msg blockprefix dome_tracer::dome_tracer_cs coupled_tracers tracer_ic_file time tr_reg tr land_val use_sponge ind_tr diag tr_desc mom_diag_mediator::downsample_diag_field downsample_diag_field_2d downsample_diag_field_3d mom_diag_mediator::downsample_field downsample_field_2d downsample_field_3d mom_diag_mediator::downsample_mask downsample_mask_2d downsample_mask_3d dumbbell_surface_forcing::dumbbell_surface_forcing_cs use_temperature restorebuoy rho0 g_earth flux_const slp_amplitude slp_period forcing_mask s_restore diag regional_dyes::dye_tracer_cs ntr coupled_tracers dye_source_minlon dye_source_maxlon dye_source_minlat dye_source_maxlat dye_source_mindepth dye_source_maxdepth tr_reg tr ind_tr diag restart_csp tr_desc tracers_may_reinit dyed_channel_initialization::dyed_channel_obc_cs zonal_flow tidal_amp frequency dyed_obc_tracer::dyed_obc_tracer_cs ntr coupled_tracers tracer_ic_file time tr_reg tr ind_tr diag restart_csp tr_desc mom_dyn_horgrid::dyn_horgrid_type domain domain_aux hi isc iec jsc jec isd ied jsd jed isg ieg jsg jeg iscb iecb jscb jecb isdb iedb jsdb jedb isgb iegb jsgb jegb isd_global jsd_global idg_offset jdg_offset symmetric nonblocking_updates first_direction mask2dt geolatt geolont dxt idxt dyt idyt areat iareat sin_rot cos_rot mask2dcu geolatcu geoloncu dxcu idxcu dycu idycu dy_cu iareacu areacu mask2dcv geolatcv geoloncv dxcv idxcv dycv idycv dx_cv iareacv areacv mask2dbu geolatbu geolonbu dxbu idxbu dybu idybu areabu iareabu gridlatt gridlatb gridlont gridlonb x_axis_units y_axis_units bathyt bathymetry_at_vel dblock_u dopen_u dblock_v dopen_v coriolisbu df_dx df_dy areat_global iareat_global south_lat west_lon len_lat len_lon rad_earth max_depth mom_coms::efp_sum_across_pes efp_list_sum_across_pes efp_val_sum_across_pes mom_coms::efp_type v mom_energetic_pbl::energetic_pbl_cs id_ml_depth id_hml_depth id_tke_wind id_tke_mixing id_tke_mke id_tke_conv id_tke_forcing id_tke_mech_decay id_tke_conv_decay id_mixing_length id_velocity_scale id_mstar_mix id_la_mod id_la id_mstar_lt vonkar omega omega_frac nstar use_mld_iteration mld_iteration_guess mld_bisection max_mld_its mixlenexponent mke_to_tke_effic ustar_min ekman_scale_coef translay_scale mld_tol min_mix_len wt_scheme wstar_ustar_coef vstar_surf_fac vstar_scale_fac mstar_scheme mstar_flatcap mstar_cap tke_decay fixed_mstar c_ek mstar_coef rh18_mstar_cn1 rh18_mstar_cn2 rh18_mstar_cn3 rh18_mstar_cs1 rh18_mstar_cs2 mstar_convect_coef use_lt lt_enhance_form lt_enhance_coef lt_enhance_exp lac_mldoek lac_mldoob_stab lac_ekoob_stab lac_mldoob_un lac_ekoob_un max_enhance_m time tke_diagnostics answers_2018 orig_pe_calc diag ml_depth diag_tke_wind diag_tke_mke diag_tke_conv diag_tke_forcing diag_tke_mech_decay diag_tke_conv_decay diag_tke_mixing mstar_mix mstar_lt la la_mod sum_its velocity_scale mixing_length mom_entrain_diffusive::entrain_diffusive_cs bulkmixedlayer max_ent_it tolerance_ent rho_sig_off diag id_kd id_diff_work mom_eos::eos_type form_of_eos form_of_tfreeze eos_quadrature compressible rho_t0_s0 drho_dt drho_ds tfr_s0_p0 dtfr_ds dtfr_dp m_to_z kg_m3_to_r r_to_kg_m3 rl2_t2_to_pa l_t_to_m_s mom_energetic_pbl::epbl_column_diags dtke_conv dtke_forcing dtke_wind dtke_mixing dtke_mke dtke_mech_decay dtke_conv_decay la lamod mstar mstar_lt dt_expect ds_expect mom_restart::field_restart vars mand_var initialized var_name mom_file_parser::file_data_type num_lines line line_used mom_io::file_exists fms_file_exists mom_file_exists mom_open_boundary::file_obc_cs tide_flow mom_horizontal_regridding::fill_boundaries fill_boundaries_real fill_boundaries_int mom_domains::fill_symmetric_edges fill_vector_symmetric_edges_2d mom_interface_heights::find_eta find_eta_2d find_eta_3d mom_forcing_type::forcing ustar ustar_gustless buoy sw sw_vis_dir sw_vis_dif sw_nir_dir sw_nir_dif lw latent sens seaice_melt_heat heat_added latent_evap_diag latent_fprec_diag latent_frunoff_diag evap lprec fprec vprec lrunoff frunoff seaice_melt netmassin netmassout netsalt heat_content_cond heat_content_lprec heat_content_icemelt heat_content_fprec heat_content_vprec heat_content_lrunoff heat_content_frunoff heat_content_massout heat_content_massin salt_flux salt_flux_in salt_flux_added p_surf_full p_surf p_surf_ssh accumulate_p_surf tke_tidal ustar_tidal ustar_berg area_berg mass_berg ustar_shelf frac_shelf_h iceshelf_melt vprecglobaladj saltfluxglobaladj netfwglobaladj vprecglobalscl saltfluxglobalscl netfwglobalscl fluxes_used dt_buoy_accum gustless_accum_bug c_p tr_fluxes num_msg max_msg mom_forcing_type::forcing_diags id_prcme id_evap id_precip id_vprec id_lprec id_fprec id_lrunoff id_frunoff id_net_massout id_net_massin id_massout_flux id_massin_flux id_seaice_melt id_total_prcme id_total_evap id_total_precip id_total_vprec id_total_lprec id_total_fprec id_total_lrunoff id_total_frunoff id_total_net_massout id_total_net_massin id_total_seaice_melt id_prcme_ga id_evap_ga id_lprec_ga id_fprec_ga id_precip_ga id_vprec_ga id_net_heat_coupler id_net_heat_surface id_sens id_lwlatsens id_sw id_lw id_sw_vis id_sw_nir id_lat_evap id_lat_frunoff id_lat id_lat_fprec id_heat_content_lrunoff id_heat_content_frunoff id_heat_content_lprec id_heat_content_fprec id_heat_content_cond id_heat_content_surfwater id_heat_content_vprec id_heat_content_massout id_heat_added id_heat_content_massin id_hfrainds id_hfrunoffds id_seaice_melt_heat id_heat_content_icemelt id_total_net_heat_coupler id_total_net_heat_surface id_total_sens id_total_lwlatsens id_total_sw id_total_lw id_total_lat_evap id_total_lat_frunoff id_total_lat id_total_lat_fprec id_total_heat_content_lrunoff id_total_heat_content_frunoff id_total_heat_content_lprec id_total_heat_content_fprec id_total_heat_content_cond id_total_heat_content_surfwater id_total_heat_content_vprec id_total_heat_content_massout id_total_heat_added id_total_heat_content_massin id_total_seaice_melt_heat id_total_heat_content_icemelt id_net_heat_coupler_ga id_net_heat_surface_ga id_sens_ga id_lwlatsens_ga id_sw_ga id_lw_ga id_lat_ga id_saltflux id_saltfluxin id_saltfluxadded id_total_saltflux id_total_saltfluxin id_total_saltfluxadded id_vprecglobaladj id_vprecglobalscl id_saltfluxglobaladj id_saltfluxglobalscl id_netfwglobaladj id_netfwglobalscl id_taux id_tauy id_ustar id_psurf id_tke_tidal id_buoy id_ustar_berg id_area_berg id_mass_berg id_ustar_ice_cover id_frac_ice_cover id_clock_forcing ocean_da_types_mod::forward_operator_type num state_size state_var_index i_index j_index coef g_tracer_utils::g_diag_type dummy g_tracer_utils::g_tracer_common isd jsd g_tracer_utils::g_tracer_get_pointer g_tracer_get_4d g_tracer_get_3d g_tracer_get_2d g_tracer_utils::g_tracer_get_values g_tracer_get_4d_val g_tracer_get_3d_val g_tracer_get_2d_val g_tracer_get_real g_tracer_get_string g_tracer_utils::g_tracer_set_values g_tracer_set_real g_tracer_set_2d g_tracer_set_3d g_tracer_set_4d g_tracer_utils::g_tracer_type field trunoff requires_restart src_file src_var_name src_var_unit src_var_gridspec src_var_record requires_src_info src_var_unit_conversion src_var_valid_min mom_geothermal::geothermal_cs drcv_dt_inplace geo_heat geothermal_thick apply_geothermal time diag id_internal_heat_heat_tendency id_internal_heat_temp_tendency id_internal_heat_h_tendency mom_file_parser::get_param get_param_int get_param_real get_param_logical get_param_char get_param_char_array get_param_time get_param_int_array get_param_real_array mom_grid_initialize::gps len_lon len_lat west_lon south_lat rad_earth lat_enhance_factor lat_eq_enhance isotropic equator_reference niglobal njglobal ocean_da_types_mod::grid_type x y z h basin_mask mask bathyt tripolar_n ni nj nk mom_checksums::hchksum chksum_h_2d chksum_h_3d mom_checksums::hchksum_pair chksum_pair_h_2d chksum_pair_h_3d mom_hor_index::hor_index_type isc iec jsc jec isd ied jsd jed isg ieg jsg jeg iscb iecb jscb jecb isdb iedb jsdb jedb isgb iegb jsgb jegb idg_offset jdg_offset symmetric niglobal njglobal turns mom_hor_visc::hor_visc_cs id_grid_re_ah id_grid_re_kh id_diffu id_diffv id_hf_diffu_2d id_hf_diffv_2d id_ah_h id_ah_q id_kh_h id_kh_q id_gme_coeff_h id_gme_coeff_q id_vort_xy_q id_div_xx_h id_sh_xy_q id_sh_xx_h id_frictwork id_frictworkintz id_frictwork_gme laplacian biharmonic debug no_slip bound_kh better_bound_kh bound_ah better_bound_ah re_ah bound_coef smagorinsky_kh smagorinsky_ah leith_kh modified_leith use_beta_in_leith leith_ah use_qg_leith_visc bound_coriolis use_kh_bg_2d kh_bg_min use_land_mask anisotropic add_les_viscosity kh_aniso dynamic_aniso res_scale_meke use_gme answers_2018 gme_h0 gme_efficiency gme_limiter min_grid_kh min_grid_ah kh_bg_xx kh_bg_2d ah_bg_xx reduction_xx kh_max_xx ah_max_xx n1n2_h n1n1_m_n2n2_h grid_sp_h2 grid_sp_h3 kh_bg_xy ah_bg_xy reduction_xy kh_max_xy ah_max_xy n1n2_q n1n1_m_n2n2_q dx2h dy2h dx_dyt dy_dxt dx2q dy2q dx_dybu dy_dxbu idx2dycu idxdy2u idx2dycv idxdy2v laplac2_const_xx biharm6_const_xx laplac3_const_xx biharm_const_xx biharm_const2_xx re_ah_const_xx laplac2_const_xy biharm6_const_xy laplac3_const_xy biharm_const_xy biharm_const2_xy re_ah_const_xy diag mom_horizontal_regridding::horiz_interp_and_extrap_tracer horiz_interp_and_extrap_tracer_record horiz_interp_and_extrap_tracer_fms_id coord_hycom::hycom_cs nk coordinateresolution target_density max_interface_depths max_layer_thickness interp_cs mom_surface_forcing_gfdl::ice_ocean_boundary_type u_flux v_flux t_flux q_flux salt_flux lw_flux sw_flux_vis_dir sw_flux_vis_dif sw_flux_nir_dir sw_flux_nir_dif lprec fprec runoff calving stress_mag ustar_berg area_berg mass_berg runoff_hflx calving_hflx p mi ice_rigidity xtype fluxes wind_stagger mom_ice_shelf::ice_shelf_cs id_melt id_exch_vel_s id_exch_vel_t id_tfreeze id_tfl_shelf id_thermal_driving id_haline_driving id_u_ml id_v_ml id_sbdry id_h_shelf id_h_mask id_surf_elev id_bathym id_area_shelf_h id_ustar_shelf id_shelf_mass id_mass_flux restart_csp grid us ocn_grid flux_factor restart_output_dir iss dcs utide ustar_bg cdrag g_earth cp rho_ocn cp_ice gamma_t salin_ice temp_ice kv_ice density_ice kv_molec kd_molec_salt kd_molec_temp lat_fusion gamma_t_3eq gamma_s_3eq col_mass_melt_threshold mass_from_file time_step solo_ice_sheet gl_regularize gl_couple calve_to_mask min_thickness_simple_calve t0 s0 input_flux input_thickness time eqn_of_state active_shelf_dynamics override_shelf_movement isthermo threeeq insulator const_gamma constant_sea_level min_ocean_mass_float cutoff_depth find_salt_root tfr_0_0 dtfr_ds dtfr_dp id_read_mass id_read_area diag user_cs debug mom_ice_shelf_dynamics::ice_shelf_dyn_cs id_u_shelf id_v_shelf id_t_shelf id_ground_frac id_col_thick id_od_av id_u_mask id_v_mask id_t_mask u_shelf v_shelf u_face_mask v_face_mask u_face_mask_bdry v_face_mask_bdry u_flux_bdry_val v_flux_bdry_val umask vmask calve_mask t_shelf tmask ice_visc thickness_bdry_val u_bdry_val v_bdry_val h_bdry_val t_bdry_val basal_traction od_rt ground_frac_rt od_av ground_frac od_rt_counter velocity_update_time_step elapsed_velocity_time g_earth density_ice gl_regularize n_sub_regularize gl_couple cfl_factor a_glen_isothermal n_glen eps_glen_min c_basal_friction n_basal_fric density_ocean_avg thresh_float_col_depth moving_shelf_front calve_to_mask min_thickness_simple_calve cg_tolerance nonlinear_tolerance cg_max_iterations nonlin_solve_err_mode debug module_is_initialized diag mom_ice_shelf_state::ice_shelf_state mass_shelf area_shelf_h h_shelf hmask tflux_ocn salt_flux water_flux tflux_shelf tfreeze ideal_age_example::ideal_age_tracer_cs ntr coupled_tracers nkml ic_file z_ic_file time tr_reg tr ic_val young_val land_val sfc_growth_rate tracer_start_year tracers_may_reinit tracer_ages ind_tr diag restart_csp tr_desc idealized_hurricane::idealized_hurricane_cs rho_a pressure_ambient pressure_central rad_max_wind max_windspeed hurr_translation_spd hurr_translation_dir gustiness rho0 hurr_cen_y0 hurr_cen_x0 holland_a holland_b holland_axbxdp relative_tau answers_2018 scm_mode br_bench dy_from_center pi deg2rad mom_ale_sponge::initialize_ale_sponge initialize_ale_sponge_fixed initialize_ale_sponge_varying mom_internal_tides::int_tide_cs id_tot_en id_tke_itidal_input id_itide_drag id_refl_pref id_refl_ang id_land_mask id_dx_cv id_dy_cu id_tot_leak_loss id_tot_quad_loss id_tot_itidal_loss id_tot_froude_loss id_tot_allprocesses_loss id_en_mode id_itidal_loss_mode id_allprocesses_loss_mode id_ub_mode id_cp_mode id_en_ang_mode id_itidal_loss_ang_mode do_int_tides nfreq nmode nangle energized_angle corner_adv upwind_1st simple_2nd vol_cfl use_ppmang refl_angle nullangle refl_pref refl_pref_logical refl_dbl cp tke_leak_loss tke_quad_loss tke_froude_loss tke_itidal_loss_fixed tke_itidal_loss tot_leak_loss tot_quad_loss tot_itidal_loss tot_froude_loss tot_allprocesses_loss q_itides en_sum time inputdir decay_rate cdrag apply_background_drag apply_bottom_drag apply_wave_drag apply_froude_drag en en_restart frequency diag wave_structure_csp mom_int_tide_input::int_tide_input_cs id_tke_itidal id_nb id_n2_bot debug diag tke_itide_max kappa_fill tke_itidal_coef inputdir int_tide_source_test time_max_source int_tide_source_x int_tide_source_y mom_int_tide_input::int_tide_input_type tke_itidal_input h2 tideamp nb regrid_interp::interp_cs_type interpolation_scheme boundary_extrapolation answers_2018 mom_checksums::is_nan is_nan_0d is_nan_1d is_nan_2d is_nan_3d isomip_tracer::isomip_tracer_cs coupled_tracers tracer_ic_file time tr_reg tr land_val use_sponge ind_tr diag tr_desc mom_kappa_shear::kappa_shear_cs id_kd_shear id_tke id_ild2 id_dz_int rino_crit shearmix_rate fri_curvature c_n c_s lambda lambda2_n_s tke_bg kappa_0 kappa_trunc kappa_tol_err prandtl_turb nkml max_rino_it max_ks_it dkdq_iteration_bug ks_at_vertex eliminate_massless vel_underflow kappa_src_max_chg psurf_bug all_layer_tke_bug restrictive_tolerance_check debug diag kdtree::kd_root dummy kelvin_initialization::kelvin_obc_cs mode coast_angle coast_offset1 coast_offset2 h0 f_0 rho_range rho_0 mom_cvmix_kpp::kpp_cs id_obldepth id_bulkri id_n id_n2 id_ws id_vt2 id_bulkuz2 id_bulkdrho id_ustar id_buoyflux id_qminussw id_nets id_sigma id_kv_kpp id_kt_kpp id_ks_kpp id_tsurf id_ssurf id_usurf id_vsurf id_kd_in id_nltt id_nlts id_nlt_dsdt id_nlt_dtdt id_nlt_temp_budget id_nlt_saln_budget id_enhk id_enhvt2 id_enhw id_la_sl id_obldepth_original ri_crit vonkarman cs cs2 enhance_diffusion interptype interptype2 computeekman computemoninobukhov passivemode deepobloffset minobldepth surf_layer_ext minvtsqr fixedobldepth fixedobldepth_value debug matchtechnique nlt_shape applynonlocaltrans n_smooth deepen_only kppzerodiffusivity kppisadditive min_thickness correctsurflayeravg surflayerdepth sw_method lt_k_enhancement lt_k_shape lt_k_method kpp_k_enh_fac lt_vt2_enhancement lt_vt2_method kpp_vt2_enh_fac stokes_mixing kpp_params diag obldepth obldepth_original kobl obldepthprev la_sl drho uz2 bulkri sigma ws n n2 vt2 kt_kpp ks_kpp kv_kpp tsurf ssurf usurf vsurf enhk enhvt2 mom_lateral_boundary_diffusion::lateral_boundary_diffusion_cs method deg surface_boundary_scheme limiter linear remap_cs kpp_csp energetic_pbl_csp diag mom_document::link_msg next name msg mom_file_parser::link_parameter next name hasissuedoverridewarning mom_barotropic::local_bt_cont_u_type fa_u_ee fa_u_e0 fa_u_w0 fa_u_ww ubt_ww ubt_ee uh_crvw uh_crve uh_ww uh_ee mom_barotropic::local_bt_cont_v_type fa_v_nn fa_v_n0 fa_v_s0 fa_v_ss vbt_ss vbt_nn vh_crvs vh_crvn vh_ss vh_nn mom_file_parser::log_param log_param_int log_param_real log_param_logical log_param_char log_param_time log_param_int_array log_param_real_array mom_file_parser::log_version log_version_cs log_version_plain mom_ice_shelf_dynamics::loop_bounds_type ish ieh jsh jeh mom_internal_tides::loop_bounds_type ish ieh jsh jeh mom_continuity_ppm::loop_bounds_type ish ieh jsh jeh mom_marine_ice::marine_ice_cs kv_iceberg berg_area_threshold latent_heat_fusion density_iceberg time diag mom_forcing_type::mech_forcing taux tauy ustar net_mass_src p_surf_full p_surf p_surf_ssh area_berg mass_berg frac_shelf_u frac_shelf_v rigidity_ice_u rigidity_ice_v dt_force_accum net_mass_src_set accumulate_p_surf accumulate_rigidity initialized mom_meke::meke_cs id_meke id_ue id_kh id_src id_ub id_ut id_gm_src id_mom_src id_gme_snk id_decay id_khmeke_u id_khmeke_v id_ku id_au id_le id_gamma_b id_gamma_t id_lrhines id_leady id_meke_equilibrium equilibrium_value meke_frcoeff meke_gmcoeff meke_gmecoeff meke_damping meke_cd_scale meke_cb meke_min_gamma meke_ct visc_drag meke_geometric meke_geometric_alpha meke_equilibrium_alt meke_equilibrium_restoring gm_src_alt rd_as_max_scale use_old_lscale use_min_lscale cdrag meke_bgsrc meke_dtscale meke_khcoeff meke_uscale meke_kh meke_k4 khmeke_fac viscosity_coeff_ku viscosity_coeff_au lfixed adeform arhines africt aeady agrid meke_advection_factor meke_topographic_beta meke_restoring_rate kh_flux_enabled initialize debug diag id_clock_pass pass_meke pass_kh mom_meke_types::meke_type meke gm_src mom_src gme_snk kh kh_diff rd_dx_h ku au khth_fac khtr_fac backscatter_ro_pow backscatter_ro_c mom_barotropic::memory_size_type isdw iedw jsdw jedw meso_surface_forcing::meso_surface_forcing_cs use_temperature restorebuoy rho0 g_earth flux_const gust_const t_restore s_restore pme solar heat inputdir salinityrestore_file sstrestore_file solar_file heating_file pme_file diag mom_mixed_layer_restrat::mixedlayer_restrat_cs id_urestrat_time id_vrestrat_time id_uhml id_vhml id_mld id_rml id_udml id_vdml id_uml id_vml ml_restrat_coef ml_restrat_coef2 front_length mle_use_pbl_mld mle_mld_decay_time mle_mld_decay_time2 mle_density_diff mle_tail_dh mle_mld_stretch debug diag mld_filtered mld_filtered_slow mom::mom_control_struct h t s u uh uhtr v vh vhtr ssh_rint ave_ssh_ibc eta_av_bc hml time_in_cycle time_in_thermo_cycle g_in g rotate_index gv us tv t_dyn_rel_adv t_dyn_rel_thermo t_dyn_rel_diag preadv_h_stored diag visc meke adiabatic diabatic_first use_ale_algorithm offline_tracer_mode time dt dt_therm thermo_spans_coupling nstep_tot count_calls debug ntrunc cont_stencil do_dynamics split use_rk2 thickness_diffuse thickness_diffuse_first mixedlayer_restrat usemeke usewaves use_p_surf_in_eos dtbt_reset_period dtbt_reset_interval dtbt_reset_time h_pre_dyn t_pre_dyn s_pre_dyn adp cdp u_prev v_prev interp_p_surf p_surf_prev_set p_surf_prev p_surf_begin p_surf_end write_ic ic_file calc_rho_for_sea_lev hmix hfrz hmix_uv check_bad_sfc_vals bad_val_ssh_max bad_val_sst_max bad_val_sst_min bad_val_sss_max bad_val_col_thick answers_2018 ids transport_ids sfc_ids diag_pre_sync diag_pre_dyn dyn_unsplit_csp dyn_unsplit_rk2_csp dyn_split_rk2_csp thickness_diffuse_csp mixedlayer_restrat_csp set_visc_csp diabatic_csp meke_csp varmix barotropic_csp tracer_reg tracer_adv_csp tracer_diff_csp tracer_flow_csp update_obc_csp obc sponge_csp ale_sponge_csp ale_csp sum_output_csp diagnostics_csp offline_csp ensemble_ocean odacs mom::mom_diag_ids id_u id_v id_h id_ssh_inst mom_domains::mom_domain_type mpp_domain mpp_domain_d2 niglobal njglobal nihalo njhalo symmetric nonblocking_updates thin_halo_updates layout io_layout x_flags y_flags maskmap mom_dynamics_split_rk2::mom_dyn_split_rk2_cs id_uh id_vh id_umo id_vmo id_umo_2d id_vmo_2d id_pfu id_pfv id_cau id_cav id_hf_pfu_2d id_hf_pfv_2d id_hf_cau_2d id_hf_cav_2d id_uav id_vav id_u_bt_accel id_v_bt_accel id_hf_u_bt_accel_2d id_hf_v_bt_accel_2d cau pfu diffu cav pfv diffv visc_rem_u u_accel_bt visc_rem_v v_accel_bt eta u_av v_av h_av eta_pf uhbt vhbt pbce taux_bot tauy_bot bt_cont bt_use_layer_fluxes split_bottom_stress calc_dtbt be begw debug debug_obc module_is_initialized diag adp cdp hor_visc_csp continuity_csp coriolisadv_csp pressureforce_csp barotropic_csp thickness_diffuse_csp vertvisc_csp set_visc_csp tides_csp ale_csp obc update_obc_csp pass_eta pass_visc_rem pass_uvp pass_hp_uv pass_uv pass_h pass_av_uvh mom_dynamics_unsplit::mom_dyn_unsplit_cs id_uh id_vh id_pfu id_pfv id_cau id_cav cau pfu diffu cav pfv diffv taux_bot tauy_bot use_correct_dt_visc debug module_is_initialized diag adp cdp hor_visc_csp continuity_csp coriolisadv_csp pressureforce_csp vertvisc_csp set_visc_csp tides_csp ale_csp obc update_obc_csp mom_dynamics_unsplit_rk2::mom_dyn_unsplit_rk2_cs id_uh id_vh id_pfu id_pfv id_cau id_cav cau pfu diffu cav pfv diffv taux_bot tauy_bot be begw use_correct_dt_visc debug module_is_initialized diag adp cdp hor_visc_csp continuity_csp coriolisadv_csp pressureforce_csp vertvisc_csp set_visc_csp tides_csp ale_csp obc update_obc_csp mom_generic_tracer::mom_generic_tracer_cs ic_file z_ic_file tracer_ic_val tracer_land_val tracers_may_reinit diag restart_csp g_tracer_list h_to_m mom_io::mom_read_data mom_read_data_4d mom_read_data_3d mom_read_data_2d mom_read_data_1d mom_io::mom_read_vector mom_read_vector_3d mom_read_vector_2d mom_restart::mom_restart_cs var_ptr0d var_ptr1d var_ptr2d var_ptr3d var_ptr4d restart novars num_obsolete_vars parallel_restartfiles large_file_support new_run new_run_set checksum_required restartfile turns restart_field restart_obsolete max_fields mom_checksum_packages::mom_state_chksum mom_state_chksum_5arg mom_state_chksum_3arg mom_neutral_diffusion::neutral_diffusion_cs nkp1 nsurf deg continuous_reconstruction debug hard_fail_heff max_iter drho_tol x_tol ref_pres interior_only upol upor ukol ukor uheff vpol vpor vkol vkor vheff ppoly_coeffs_t ppoly_coeffs_s drdt drds tint sint pint t_i s_i p_i drdt_i drds_i ns stable_cell r_to_kg_m3 diag neutral_pos_method delta_rho_form id_uheff_2d id_vheff_2d eos remap_cs remap_answers_2018 kpp_csp energetic_pbl_csp mom_open_boundary::obc_registry_type nobc ob locked mom_open_boundary::obc_segment_data_type fid fid_dz name buffer_src nk_src dz_src buffer_dst value mom_open_boundary::obc_segment_tracer_type t obc_inflow_conc name tr tres is_initialized mom_open_boundary::obc_segment_type flather radiation radiation_tan radiation_grad oblique oblique_tan oblique_grad nudged nudged_tan nudged_grad specified specified_tan specified_grad open gradient values_needed u_values_needed uamp_values_needed uphase_values_needed v_values_needed vamp_values_needed vphase_values_needed t_values_needed s_values_needed z_values_needed zamp_values_needed zphase_values_needed g_values_needed direction is_n_or_s is_e_or_w is_e_or_w_2 field num_fields field_names is_obc ie_obc js_obc je_obc uamp_index uphase_index vamp_index vphase_index zamp_index zphase_index velocity_nudging_timescale_in velocity_nudging_timescale_out on_pe temp_segment_data_exists salt_segment_data_exists cg htot h normal_vel tangential_vel tangential_grad normal_trans normal_vel_bt eta grad_normal grad_tan grad_gradient rx_norm_rad ry_norm_rad rx_norm_obl ry_norm_obl cff_normal nudged_normal_vel nudged_tangential_vel nudged_tangential_grad tr_reg hi tr_invlscale_out tr_invlscale_in mom_open_boundary::obc_struct_type name mom_restart::obsolete_restart field_name replacement_name ocean_da_types_mod::ocean_control_struct ensemble_size ssh h t s u v mom_grid::ocean_grid_type domain domain_aux hi hid2 isc iec jsc jec isd ied jsd jed isg ieg jsg jeg iscb iecb jscb jecb isdb iedb jsdb jedb isgb iegb jsgb jegb isd_global jsd_global idg_offset jdg_offset ke symmetric nonblocking_updates first_direction mask2dt geolatt geolont dxt idxt dyt idyt areat iareat sin_rot cos_rot mask2dcu geolatcu geoloncu dxcu idxcu dycu idycu dy_cu iareacu areacu mask2dcv geolatcv geoloncv dxcv idxcv dycv idycv dx_cv iareacv areacv mask2dbu geolatbu geolonbu dxbu idxbu dybu idybu areabu iareabu gridlatt gridlatb gridlont gridlonb x_axis_units y_axis_units bathyt z_ref bathymetry_at_vel dblock_u dopen_u dblock_v dopen_v coriolisbu df_dx df_dy areat_global iareat_global us nblocks block south_lat west_lon len_lat len_lon rad_earth max_depth mom_variables::ocean_internal_state t s u v h uh vh cau cav pfu pfv diffu diffv pbce u_accel_bt v_accel_bt u_av v_av u_prev v_prev ocean_model_mod::ocean_model_data_get ocean_model_data1d_get ocean_model_data2d_get mom_open_boundary::ocean_obc_type number_of_segments ke open_u_bcs_exist_globally open_v_bcs_exist_globally flather_u_bcs_exist_globally flather_v_bcs_exist_globally oblique_bcs_exist_globally nudged_u_bcs_exist_globally nudged_v_bcs_exist_globally specified_u_bcs_exist_globally specified_v_bcs_exist_globally radiation_bcs_exist_globally user_bcs_set_globally update_obc needs_io_for_data zero_vorticity freeslip_vorticity computed_vorticity specified_vorticity zero_strain freeslip_strain computed_strain specified_strain zero_biharmonic brushcutter_mode tracer_x_reservoirs_used tracer_y_reservoirs_used ntr n_tide_constituents add_tide_constituents tide_names tide_frequencies tide_eq_phases tide_fn tide_un add_eq_phase add_nodal_terms time_ref tidal_longitudes segment segnum_u segnum_v gamma_uv rx_max obc_pe remap_cs obc_reg rx_normal ry_normal rx_oblique ry_oblique cff_normal tres_x tres_y silly_h silly_u ramp ramping_is_activated ramp_timescale trunc_ramp_time ramp_value ramp_start_time ocean_da_types_mod::ocean_profile_type inst_type initialized colocated ensemble_size num_variables var_id platform levels basin_mask profile_flag lat lon accepted time_window obs_error loc_dist next prev cnext cprev nbr_xi nbr_yi nbr_dist compute depth data flag forecast analysis obs_def time i_index j_index k_index tdiff filename ocean_model_mod::ocean_public_type domain is_ocean_pe instance_name pelist maskmap stagger t_surf s_surf u_surf v_surf sea_lev frazil area fields avg_kount axes ocean_model_mod::ocean_state_type is_ocean_pe time time_dyn restart_control nstep nstep_thermo use_ice_shelf use_waves icebergs_alter_ocean press_to_z c_p offline_tracer_mode single_step_call dt dt_therm thermo_spans_coupling diabatic_first dirs forces fluxes flux_tmp sfc_state grid gv us mom_csp ice_shelf_csp marine_ice_csp waves forcing_csp restart_csp diag mom_ocmip2_cfc::ocmip2_cfc_cs a1_11 a1_12 a2_11 a2_12 a3_11 a3_12 a4_11 a4_12 d1_11 d1_12 d2_11 d2_12 d3_11 d3_12 d4_11 d4_12 e1_11 e1_12 e2_11 e2_12 e3_11 e3_12 ic_file z_ic_file time tr_reg cfc11 cfc12 cfc11_ic_val cfc12_ic_val cfc11_land_val cfc12_land_val tracers_may_reinit cfc11_name cfc12_name ind_cfc_11_flux ind_cfc_12_flux diag restart_csp cfc11_desc cfc12_desc mom_oda_driver_mod::oda_cs ocean_prior ocean_posterior nk grid domains gv us mpp_domain oda_grid h tv ni nj reentrant_x reentrant_y tripolar_n symmetric assim_method ensemble_size ensemble_id ensemble_pelist filter_pelist assim_frequency profiles cprofiles kdroot ale_cs use_ale_algorithm regridcs remapcs time diag_cs mom_offline_main::offline_transport_cs id_uhr id_vhr id_ear id_ebr id_hr id_hdiff id_uhr_redist id_vhr_redist id_uhr_end id_vhr_end id_eta_pre_distribute id_eta_post_distribute id_h_redist id_eta_diff_end id_uhtr_regrid id_vhtr_regrid id_temp_regrid id_salt_regrid id_h_regrid ale_csp diabatic_csp diag obc tracer_adv_csp opacity_csp tracer_flow_csp tracer_reg tv g gv us optics diabatic_aux_csp start_index iter_no numtime accumulated_time vertical_time ridx_sum ridx_snap nk_input offlinedir surf_file snap_file sum_file mean_file redistribute_method mld_var_name fields_are_offset x_before_y print_adv_offline skip_diffusion read_sw read_mld diurnal_sw debug redistribute_barotropic redistribute_upwards read_all_ts_uvh num_off_iter num_vert_iter off_ale_mod dt_offline dt_offline_vertical evap_cfl_limit minimum_forcing_depth kd_max min_residual id_clock_read_fields id_clock_offline_diabatic id_clock_offline_adv id_clock_redistribute uhtr vhtr eatr ebtr kd h_end netmassin netmassout mld uhtr_all vhtr_all hend_all temp_all salt_all oil_tracer::oil_tracer_cs ntr coupled_tracers ic_file z_ic_file oil_source_longitude oil_source_latitude oil_source_i oil_source_j oil_source_rate oil_start_year oil_end_year time tr_reg tr ic_val young_val land_val sfc_growth_rate oil_decay_days oil_decay_rate oil_source_k oil_may_reinit ind_tr tr_desc diag restart_csp mom_opacity::opacity_cs id_sw_pen id_sw_vis_pen id_opacity var_pen_sw opacity_scheme pen_sw_scale pen_sw_scale_2nd sw_1st_exp_ratio pen_sw_frac blue_frac opacity_land_value diag mom_coms::operator(+) efp_plus mom_coms::operator(-) efp_minus mom_opacity::optics_type nbands opacity_band sw_pen_band min_wavelength_band max_wavelength_band pensw_flux_absorb pensw_absorb_invlen answers_2018 mom_restart::p0d p mom_restart::p1d p mom_ale_sponge::p2d id nz_data num_tlevs mask_in p h mom_restart::p2d p mom_variables::p2d p mom_sponge::p2d p mom_tracer_hor_diff::p2d p mom_tracer_hor_diff::p2di p mom_sponge::p3d p mom_restart::p3d p mom_ale_sponge::p3d id nz_data num_tlevs mask_in p h mom_variables::p3d p mom_restart::p4d p mom_file_parser::param_file_type nfiles iounit filename netcdf_file param_data report_unused unused_params_fatal log_to_stdout log_open stdout stdlog doc_file complete_doc minimal_doc doc chain blockname mom_file_parser::parameter_block name mom_domains::pass_var pass_var_3d pass_var_2d mom_domains::pass_var_complete pass_var_complete_3d pass_var_complete_2d mom_domains::pass_var_start pass_var_start_3d pass_var_start_2d mom_domains::pass_vector pass_vector_3d pass_vector_2d mom_domains::pass_vector_complete pass_vector_complete_3d pass_vector_complete_2d mom_domains::pass_vector_start pass_vector_start_3d pass_vector_start_2d mom_pointaccel::pointaccel_cs u_trunc_file v_trunc_file u_file v_file cols_written max_writes time diag u_av v_av u_prev v_prev t s u_accel_bt v_accel_bt pbce mom_diag_mediator::post_data post_data_3d post_data_2d post_data_1d_k post_data_0d mom_pressureforce::pressureforce_cs analytic_fv_pgf pressureforce_fv_csp pressureforce_mont_csp mom_pressureforce_fv::pressureforce_fv_cs tides rho0 gfs_scale time diag usemasswghtinterp boundary_extrap reconstruct recon_scheme stanley_t2_det_coeff id_e_tidal id_tvar_sgs tides_csp mom_pressureforce_mont::pressureforce_mont_cs id_pfu_bc id_pfv_bc id_e_tidal tides rho0 gfs_scale time diag pfu_bc pfv_bc tides_csp mom_random::prng stream0d stream2d pseudo_salt_tracer::pseudo_salt_tracer_cs time tr_reg ps diff pseudo_salt_may_reinit id_psd diag restart_csp tr_desc mom_oda_driver_mod::ptr_mpp_domain mpp_domain mom_checksums::qchksum chksum_b_2d chksum_b_3d mom_restart::query_initialized query_initialized_name query_initialized_0d query_initialized_0d_name query_initialized_1d query_initialized_1d_name query_initialized_2d query_initialized_2d_name query_initialized_3d query_initialized_3d_name query_initialized_4d query_initialized_4d_name mom_file_parser::read_param read_param_int read_param_real read_param_logical read_param_char read_param_char_array read_param_time read_param_int_array read_param_real_array mom_diag_manager_wrapper::register_diag_field_fms register_diag_field_array_fms register_diag_field_scalar_fms mom_restart::register_restart_field register_restart_field_ptr4d register_restart_field_4d register_restart_field_ptr3d register_restart_field_3d register_restart_field_ptr2d register_restart_field_2d register_restart_field_ptr1d register_restart_field_1d register_restart_field_ptr0d register_restart_field_0d mom_restart::register_restart_pair register_restart_pair_ptr2d register_restart_pair_ptr3d register_restart_pair_ptr4d mom_regridding::regridding_cs coordinateresolution coord_scale target_density target_density_set max_interface_depths max_layer_thickness nk regridding_scheme interp_cs min_thickness ref_pressure old_grid_weight depth_of_time_filter_shallow depth_of_time_filter_deep compressibility_fraction set_maximum_depths max_depth_index_scale integrate_downward_for_e remap_answers_2018 zlike_cs sigma_cs rho_cs hycom_cs slight_cs adapt_cs mom_regularize_layers::regularize_layers_cs regularize_surface_layers reg_sfc_detrain density_match_tol h_def_tol1 h_def_tol2 h_def_tol3 h_def_tol4 hmix_min time diag answers_2018 debug id_def_rat allow_clocks_in_omp_loops mom_remapping::remapping_cs remapping_scheme degree boundary_extrapolation check_reconstruction check_remapping force_bounds_in_subcell answers_2018 mom_coms::reproducing_sum reproducing_sum_2d reproducing_sum_3d mom_coms::reproducing_sum_efp reproducing_efp_sum_2d rgc_tracer::rgc_tracer_cs coupled_tracers tracer_ic_file time tr_reg tr tr_aux land_val lenlat lenlon csl lensponge mask_tracers use_sponge diag tr_desc coord_rho::rho_cs nk min_thickness ref_pressure integrate_downward_for_e target_density interp_cs mom_array_transform::rotate_array rotate_array_real_2d rotate_array_real_3d rotate_array_real_4d rotate_array_integer rotate_array_logical mom_array_transform::rotate_array_pair rotate_array_pair_real_2d rotate_array_pair_real_3d rotate_array_pair_integer mom_array_transform::rotate_vector rotate_vector_real_2d rotate_vector_real_3d rotate_vector_real_4d mom_transform_fms::rotated_mpp_chksum rotated_mpp_chksum_real_0d rotated_mpp_chksum_real_1d rotated_mpp_chksum_real_2d rotated_mpp_chksum_real_3d rotated_mpp_chksum_real_4d mom_transform_fms::rotated_time_interp_external rotated_time_interp_external_0d rotated_time_interp_external_2d rotated_time_interp_external_3d mom_transform_fms::rotated_write_field rotated_write_field_real_0d rotated_write_field_real_1d rotated_write_field_real_2d rotated_write_field_real_3d rotated_write_field_real_4d mom_safe_alloc::safe_alloc_alloc safe_alloc_allocatable_3d safe_alloc_allocatable_2d safe_alloc_allocatable_3d_6arg mom_safe_alloc::safe_alloc_ptr safe_alloc_ptr_3d_3arg safe_alloc_ptr_3d_6arg safe_alloc_ptr_2d_2arg safe_alloc_ptr_3d safe_alloc_ptr_2d safe_alloc_ptr_1d scm_cvmix_tests::scm_cvmix_tests_cs usewindstress useheatflux useevaporation usediurnalsw tau_x tau_y surf_hf surf_evap max_sw rho0 mom_open_boundary::segment_tracer_registry_type ntseg tr locked mom_set_diffusivity::set_diffusivity_cs id_maxtke id_tke_to_kd id_kd_user id_kd_layer id_kd_bbl id_n2 id_kd_work id_kt_extra id_ks_extra id_r_rho id_kd_bkgnd id_kv_bkgnd debug bulkmixedlayer fluxri_max bottomdraglaw bbl_mixing_as_max use_lotw_bbl_diffusivity lotw_bbl_use_omega bbl_effic cdrag imax_decay kv kd kd_min kd_max kd_add kd_smooth diag limit_dissipation dissip_min dissip_n0 dissip_n1 dissip_n2 dissip_kd_min omega ml_radiation ml_rad_kd_max ml_rad_efold_coeff ml_rad_coeff ml_rad_bug ml_rad_tke_decay ustar_min tke_decay mstar ml_use_omega ml_omega_frac user_change_diff usekappashear vertex_shear use_cvmix_shear double_diffusion use_cvmix_ddiff use_tidal_mixing simple_tke_to_kd max_rrho_salt_fingers max_salt_diff_salt_fingers kv_molecular answers_2018 inputdir user_change_diff_csp kappashear_csp cvmix_shear_csp cvmix_ddiff_csp bkgnd_mixing_csp int_tide_csp tidal_mixing_csp mom_ale_sponge::set_up_ale_sponge_field set_up_ale_sponge_field_fixed set_up_ale_sponge_field_varying mom_ale_sponge::set_up_ale_sponge_vel_field set_up_ale_sponge_vel_field_fixed set_up_ale_sponge_vel_field_varying mom_set_visc::set_visc_cs id_bbl_thick_u id_kv_bbl_u id_bbl_u id_bbl_thick_v id_kv_bbl_v id_bbl_v id_ray_u id_ray_v id_nkml_visc_u id_nkml_visc_v hbbl cdrag c_smag drag_bg_vel bbl_thick_min htbl_shelf htbl_shelf_min kv_bbl_min kv_tbl_min bottomdraglaw bbl_use_eos linear_drag channel_drag correct_bbl_bounds rino_mix dynamic_viscous_ml bulk_ri_ml omega ustar_min tke_decay omega_frac answers_2018 debug bbl_use_tidal_bg inputdir obc diag tideamp bbl_u bbl_v shelfwave_initialization::shelfwave_obc_cs lx ly f0 jj kk ll alpha omega coord_sigma::sigma_cs nk min_thickness coordinateresolution coord_slight::slight_cs nk min_thickness ref_pressure compressibility_fraction rho_ml_avg_depth nlay_ml_offset nz_fixed_surface dz_ml_min fix_haloclines halocline_filter_length halocline_strat_tol target_density max_interface_depths max_layer_thickness interp_cs mom_sponge::sponge_cs bulkmixedlayer nz isc iec jsc jec isd ied jsd jed num_col fldno col_i col_j iresttime_col rcv_ml_ref ref_eta var ref_val do_i_mean_sponge iresttime_im rcv_ml_ref_im ref_eta_im ref_val_im diag id_w_sponge regrid_consts::state_dependent state_dependent_char state_dependent_int mom_checksum_packages::stats minimum maximum average mom_sum_output::sum_output_cs dl list_size lh do_ape_calc read_depth_list depth_list_file d_list_min_inc require_depth_list_chksum update_depth_list_chksum use_temperature fresh_water_in_efp net_salt_in_efp net_heat_in_efp heat_prev_efp salt_prev_efp mass_prev_efp dt_in_t energysavedays energysavedays_geometric energysave_geometric write_energy_time geometric_end_time timeunit date_stamped_output start_time ntrunc max_energy maxtrunc write_stocks previous_calls prev_n fileenergy_nc fileenergy_ascii fields energyfile mom_variables::surface sst sss sfc_density hml u v sea_lev frazil melt_potential ocean_mass ocean_heat ocean_salt taux_shelf tauy_shelf tempxpme salt_deficit internal_heat t_is_cont s_is_abss tr_fields arrays_allocated mom_diagnostics::surface_diag_ids id_zos id_zossq id_volo id_speed id_ssh id_ssh_ga id_sst id_sst_sq id_sstcon id_sss id_sss_sq id_sssabs id_ssu id_ssv id_fraz id_salt_deficit id_heat_pme id_intern_heat mom_surface_forcing::surface_forcing_cs urf_cs user_forcing_csp bfb_forcing_csp dumbbell_forcing_csp meso_forcing_csp idealized_hurricane_csp scm_cvmix_tests_csp use_temperature restorebuoy adiabatic variable_winds variable_buoyforce south_lat len_lat rho0 g_earth flux_const flux_const_t flux_const_s latent_heat_fusion latent_heat_vapor tau_x0 tau_y0 gust_const read_gust_2d gust t_restore s_restore dens_restore buoy_last_lev_read gyres_taux_const gyres_taux_sin_amp gyres_taux_cos_amp gyres_taux_n_pis answers_2018 fix_ustar_gustless_bug scurves_ydata scurves_taux t_north t_south s_north s_south first_call_set_forcing archaic_omip_file dataoverrideisinitialized wind_scale constantheatforcing wind_stagger tracer_flow_csp restart_csp diag inputdir wind_config wind_file buoy_config longwave_file shortwave_file evaporation_file sensibleheat_file latentheat_file rain_file snow_file runoff_file longwaveup_file shortwaveup_file sstrestore_file salinityrestore_file stress_x_var stress_y_var ustar_var lw_var sw_var latent_var sens_var evap_var rain_var snow_var lrunoff_var frunoff_var sst_restore_var sss_restore_var wind_nlev sw_nlev lw_nlev latent_nlev sens_nlev evap_nlev precip_nlev runoff_nlev sst_nlev sss_nlev wind_last_lev sw_last_lev lw_last_lev latent_last_lev sens_last_lev evap_last_lev precip_last_lev runoff_last_lev sst_last_lev sss_last_lev handles mom_surface_forcing_gfdl::surface_forcing_cs wind_stagger use_temperature wind_stress_multiplier rho0 area_surf latent_heat_fusion latent_heat_vapor max_p_surf use_limited_p_ssh approx_net_mass_src gust_const read_gust_2d tke_tidal gust ustar_tidal cd_tides utide read_tideamp rigid_sea_ice g_earth kv_sea_ice density_sea_ice rigid_sea_ice_mass allow_flux_adjustments restore_salt restore_temp flux_const salt_restore_as_sflux adjust_net_srestore_to_zero adjust_net_srestore_by_scaling adjust_net_fresh_water_to_zero use_net_fw_adjustment_sign_bug adjust_net_fresh_water_by_scaling mask_srestore_under_ice ice_salt_concentration mask_srestore_marginal_seas max_delta_srestore max_delta_trestore basin_mask answers_2018 fix_ustar_gustless_bug check_no_land_fluxes diag inputdir salt_restore_file salt_restore_var_name mask_srestore srestore_mask temp_restore_file temp_restore_var_name mask_trestore trestore_mask id_srestore id_trestore handles restart_csp urf_cs mom_variables::thermo_var_ptrs t s p_surf eqn_of_state p_ref c_p t_is_cont s_is_abss min_salinity frazil salt_deficit tempxpme internal_heat vart vars covarts mom_thickness_diffuse::thickness_diffuse_cs id_uhgm id_vhgm id_gmwork id_kh_u id_kh_v id_kh_t id_kh_u1 id_kh_v1 id_kh_t1 id_slope_x id_slope_y id_sfn_unlim_x id_sfn_unlim_y id_sfn_x id_sfn_y khth khth_slope_cff max_khth_cfl khth_min khth_max slope_max kappa_smooth thickness_diffuse use_fgnv_streamfn fgnv_scale fgnv_c_min n2_floor detangle_interfaces detangle_time nkml debug use_gme_thickness_diffuse meke_geometric meke_geometric_alpha meke_geometric_epsilon meke_geom_answers_2018 use_kh_in_meke gm_src_alt use_gm_work_bug stanley_det_coeff diag gmwork diagslopex diagslopey kh_u_gme kh_v_gme tidal_bay_initialization::tidal_bay_obc_cs tide_flow mom_tidal_forcing::tidal_forcing_cs use_sal_scalar tidal_sal_from_file use_prev_tides use_eq_phase sal_scalar nc freq phase0 amp love_no struct const_name time_ref tidal_longitudes sin_struct cos_struct cosphasesal sinphasesal ampsal cosphase_prev sinphase_prev amp_prev mom_tidal_mixing::tidal_mixing_cs id_tke_itidal id_tke_leewave id_kd_itidal id_kd_niku id_kd_lowmode id_kd_itidal_work id_kd_niku_work id_kd_lowmode_work id_nb id_n2_bot id_n2_meanz id_fl_itidal id_fl_lowmode id_polzin_decay_scale id_polzin_decay_scale_scaled id_n2_int id_simmons_coeff id_schmittner_coeff id_tidal_qe_md id_vert_dep debug int_tide_dissipation int_tide_profile lee_wave_dissipation lee_wave_profile int_tide_decay_scale mu_itides gamma_itides gamma_lee decay_scale_factor_lee min_zbot_itides lowmode_itidal_dissipation nu_polzin nbotref_polzin polzin_decay_scale_factor polzin_decay_scale_max_factor polzin_min_decay_scale tke_itide_max utide kappa_itides kappa_h2_factor inputdir use_cvmix_tidal min_thickness cvmix_tidal_scheme cvmix_tidal_params cvmix_glb_params tidal_max_coef tidal_diss_lim_tc remap_cs remap_answers_2018 tke_niku tke_itidal nb mask_itidal h2 tideamp h_src tidal_qe_2d tidal_qe_3d_in answers_2018 diag dd mom_tidal_mixing::tidal_mixing_diags kd_itidal fl_itidal kd_niku kd_niku_work kd_itidal_work kd_lowmode_work n2_int vert_dep_3d schmittner_coeff_3d tidal_qe_md kd_lowmode fl_lowmode tke_itidal_used n2_bot n2_meanz polzin_decay_scale_scaled polzin_decay_scale simmons_coeff_2d mom_tracer_advect::tracer_advect_cs dt diag debug useppm usehuynh pass_uhr_vhr_t_hprev mom_tracer_flow_control::tracer_flow_control_cs user_tracer_example_csp dome_tracer_csp isomip_tracer_csp rgc_tracer_csp ideal_age_tracer_csp dye_tracer_csp oil_tracer_csp advection_test_tracer_csp ocmip2_cfc_csp mom_generic_tracer_csp pseudo_salt_tracer_csp boundary_impulse_tracer_csp dyed_obc_tracer_csp use_user_tracer_example use_dome_tracer use_isomip_tracer use_rgc_tracer use_ideal_age use_regional_dyes use_oil use_advection_test_tracer use_ocmip2_cfc use_mom_generic_tracer use_pseudo_salt_tracer use_boundary_impulse_tracer use_dyed_obc_tracer mom_tracer_hor_diff::tracer_hor_diff_cs id_khtr_u id_khtr_v id_khtr_h id_cfl id_khdt_x id_khdt_y khtr khtr_slope_cff khtr_min khtr_max khtr_passivity_coeff khtr_passivity_min ml_khtr_scale max_diff_cfl diffuse_ml_interior check_diffusive_cfl use_neutral_diffusion use_lateral_boundary_diffusion recalc_neutral_surf neutral_diffusion_csp lateral_boundary_diffusion_csp diag debug show_call_tree first_call pass_t mom_tracer_registry::tracer_registry_type ntr tr locked mom_tracer_registry::tracer_type id_tr id_tr_post_horzn id_adx id_ady id_dfx id_dfy id_lbd_bulk_dfx id_lbd_bulk_dfy id_lbd_dfx id_lbd_dfy id_lbd_dfx_2d id_lbd_dfy_2d id_adx_2d id_ady_2d id_dfx_2d id_dfy_2d id_adv_xy id_adv_xy_2d id_dfxy_cont id_dfxy_cont_2d id_dfxy_conc id_lbdxy_cont id_lbdxy_cont_2d id_lbdxy_conc id_remap_conc id_remap_cont id_remap_cont_2d id_tendency id_trxh_tendency id_trxh_tendency_2d id_tr_vardec t ad_x ad_y ad2d_x ad2d_y df_x df_y lbd_dfx lbd_dfy lbd_dfx_2d lbd_dfy_2d lbd_bulk_df_x lbd_bulk_df_y df2d_x df2d_y advection_xy t_prev trxh_prev name units longname registry_diags cmor_name cmor_units cmor_longname flux_nameroot flux_longname flux_scale flux_units conv_units conv_scale cmor_tendprefix ind_tr_squared remap_tr diag_form mom_diagnostics::transport_diag_ids id_uhtr id_umo id_umo_2d id_vhtr id_vmo id_vmo_2d id_dynamics_h id_dynamics_h_tendency mom_checksums::uchksum chksum_u_2d chksum_u_3d mom_unit_scaling::unit_scale_type m_to_z z_to_m m_to_l l_to_m s_to_t t_to_s r_to_kg_m3 kg_m3_to_r q_to_j_kg j_kg_to_q z_to_l l_to_z l_t_to_m_s m_s_to_l_t l_t2_to_m_s2 z2_t_to_m2_s m2_s_to_z2_t w_m2_to_qrz_t qrz_t_to_w_m2 rz_to_kg_m2 kg_m2s_to_rz_t rz_t_to_kg_m2s rz3_t3_to_w_m2 w_m2_to_rz3_t3 rl2_t2_to_pa m_to_z_restart m_to_l_restart s_to_t_restart kg_m3_to_r_restart j_kg_to_q_restart mom_boundary_update::update_obc_cs file_obc_csp kelvin_obc_csp tidal_bay_obc_csp shelfwave_obc_csp dyed_channel_obc_csp use_files use_kelvin use_tidal_bay use_shelfwave use_dyed_channel user_change_diffusivity::user_change_diff_cs kd_add lat_range rho_range use_abs_lat diag user_shelf_init::user_ice_shelf_cs rho_ocean max_draft min_draft flat_shelf_width shelf_slope_scale pos_shelf_edge_0 shelf_speed first_call user_revise_forcing::user_revise_forcing_cs cdrag user_surface_forcing::user_surface_forcing_cs use_temperature restorebuoy rho0 g_earth flux_const gust_const diag user_tracer_example::user_tracer_example_cs coupled_tracers tracer_ic_file time tr_reg tr land_val use_sponge ind_tr diag tr_desc mom_checksums::uvchksum chksum_uv_2d chksum_uv_3d mom_io::vardesc name units longname hor_grid z_grid t_grid cmor_field_name cmor_units cmor_longname conversion mom_lateral_mixing_coeffs::varmix_cs id_sn_u id_sn_v id_l2u id_l2v id_res_fn id_n2_u id_n2_v id_s2_u id_s2_v id_rd_dx id_kh_u_qg id_kh_v_qg diag use_variable_mixing resoln_scaled_kh resoln_scaled_khth depth_scaled_khth resoln_scaled_khtr interpolate_res_fn use_stored_slopes resoln_use_ebt khth_use_ebt_struct calculate_cg1 calculate_rd_dx calculate_res_fns calculate_depth_fns calculate_eady_growth_rate sn_u sn_v l2u l2v cg1 res_fn_h res_fn_q res_fn_u res_fn_v depth_fn_u depth_fn_v beta_dx2_h beta_dx2_q beta_dx2_u beta_dx2_v f2_dx2_h f2_dx2_q f2_dx2_u f2_dx2_v rd_dx_h slope_x slope_y ebt_struct laplac3_const_u laplac3_const_v kh_u_qg kh_v_qg use_visbeck varmix_ktop visbeck_l_scale res_coef_khth res_coef_visc depth_scaled_khth_h0 depth_scaled_khth_exp kappa_smooth res_fn_power_khth res_fn_power_visc visbeck_s_max use_qg_leith_gm use_beta_in_qg_leith wave_speed_csp pass_cg1 debug mom_checksums::vchksum chksum_v_2d chksum_v_3d mom_debugging::vec_chksum chksum_vec_c3d chksum_vec_c2d mom_debugging::vec_chksum_a chksum_vec_a3d chksum_vec_a2d mom_debugging::vec_chksum_b chksum_vec_b3d chksum_vec_b2d mom_debugging::vec_chksum_c chksum_vec_c3d chksum_vec_c2d mom_verticalgrid::verticalgrid_type ke max_depth mks_g_earth g_earth rho0 zaxisunits zaxislongname slayer sinterface direction boussinesq angstrom_h angstrom_z angstrom_m h_subroundoff g_prime rlay nkml nk_rho_varies h_to_kg_m2 kg_m2_to_h m_to_h h_to_m h_to_pa h_to_z z_to_h h_to_rz rz_to_h h_to_mks m_to_h_restart mom_vert_friction::vertvisc_cs id_du_dt_visc id_dv_dt_visc id_au_vv id_av_vv id_h_u id_h_v id_hml_u id_hml_v id_taux_bot id_tauy_bot id_kv_slow id_kv_u id_kv_v id_hf_du_dt_visc_2d id_hf_dv_dt_visc_2d hmix hmix_stress kvml kv hbbl kvbbl maxvel vel_underflow cfl_based_trunc cfl_trunc cfl_report truncramptime cfl_truncs cfl_trunce cflrampingisactivated rampstarttime a_u h_u a_v h_v a1_shelf_u a1_shelf_v split bottomdraglaw channel_drag harmonic_visc harm_bl_val direct_stress dynamic_viscous_ml answers_2018 debug nkml ntrunc u_trunc_file v_trunc_file stokesmixing diag pointaccel_csp mom_variables::vertvisc_type prandtl_turb bbl_thick_u bbl_thick_v kv_bbl_u kv_bbl_v ustar_bbl tke_bbl taux_shelf tauy_shelf tbl_thick_shelf_u tbl_thick_shelf_v kv_tbl_shelf_u kv_tbl_shelf_v nkml_visc_u nkml_visc_v mld ray_u ray_v kd_shear kv_shear kv_shear_bu kv_slow tke_turb mom_wave_interface::wave_parameters_cs id_surfacestokes_x id_surfacestokes_y id_3dstokes_x id_3dstokes_y id_la_turb usewaves lagrangianmixing stokesmixing coriolisstokes stklevelmode wavenum_cen freq_cen prescribedsurfstkx prescribedsurfstky us_x us_y la_sl la_turb us0_x us0_y stkx0 stky0 kvs time diag la_min mom_wave_speed::wave_speed_cs use_ebt_mode better_cg1_est mono_n2_column_fraction mono_n2_depth min_speed2 wave_speed_tol remapping_cs remap_answers_2018 diag mom_wave_structure::wave_structure_cs diag w_strct u_strct w_profile uavg_profile z_depths n2 num_intfaces int_tide_source_x int_tide_source_y mom_write_cputime::write_cputime_cs maxcpu start_time startup_cputime prev_cputime dn_dcpu_min cputime2 previous_calls prev_n filecpu_ascii cpufile coord_zlike::zlike_cs nk min_thickness coordinateresolution adjustment_initialization mdl adjustment_initialize_thickness adjustment_initialize_temperature_salinity advection_test_tracer ntr register_advection_test_tracer initialize_advection_test_tracer advection_test_tracer_column_physics advection_test_tracer_surface_state advection_test_stock advection_test_tracer_end atmos_ocean_fluxes_mod aof_set_coupler_flux baroclinic_zone_initialization mdl bcz_params baroclinic_zone_init_temperature_salinity basin_builder mdl basin_builder_topography cone scurve cstprof dist_line_fixed_x dist_line_fixed_y ns_coast ew_coast ns_conic_ridge ns_scurve_ridge circ_conic_ridge circ_scurve_ridge benchmark_initialization benchmark_initialize_topography benchmark_initialize_thickness benchmark_init_temperature_salinity bfb_initialization first_call bfb_set_coord bfb_initialize_sponges_southonly write_bfb_log bfb_surface_forcing bfb_buoyancy_forcing bfb_surface_forcing_init boundary_impulse_tracer ntr_max register_boundary_impulse_tracer initialize_boundary_impulse_tracer boundary_impulse_tracer_column_physics boundary_impulse_stock boundary_impulse_tracer_surface_state boundary_impulse_tracer_end circle_obcs_initialization circle_obcs_initialize_thickness coord_adapt init_coord_adapt end_coord_adapt set_adapt_params build_adapt_column coord_hycom init_coord_hycom end_coord_hycom set_hycom_params build_hycom1_column coord_rho init_coord_rho end_coord_rho set_rho_params build_rho_column build_rho_column_iteratively copy_finite_thicknesses old_inflate_layers_1d coord_sigma init_coord_sigma end_coord_sigma set_sigma_params build_sigma_column coord_slight init_coord_slight end_coord_slight set_slight_params build_slight_column rho_interfaces_col coord_zlike init_coord_zlike end_coord_zlike set_zlike_params build_zstar_column dense_water_initialization mdl default_sill default_shelf default_mld dense_water_initialize_topography dense_water_initialize_ts dense_water_initialize_sponges dome2d_initialization mdl dome2d_initialize_topography dome2d_initialize_thickness dome2d_initialize_temperature_salinity dome2d_initialize_sponges dome_initialization dome_initialize_topography dome_initialize_thickness dome_initialize_sponges dome_set_obc_data dome_tracer ntr register_dome_tracer initialize_dome_tracer dome_tracer_column_physics dome_tracer_surface_state dome_tracer_end dumbbell_initialization mdl dumbbell_initialize_topography dumbbell_initialize_thickness dumbbell_initialize_temperature_salinity dumbbell_initialize_sponges dumbbell_surface_forcing dumbbell_buoyancy_forcing dumbbell_dynamic_forcing dumbbell_surface_forcing_init dyed_channel_initialization ntr register_dyed_channel_obc dyed_channel_obc_end dyed_channel_set_obc_tracer_data dyed_channel_update_flow dyed_obc_tracer register_dyed_obc_tracer initialize_dyed_obc_tracer dyed_obc_tracer_column_physics dyed_obc_tracer_end dyed_obcs_initialization ntr dyed_obcs_set_obc_data external_gwave_initialization external_gwave_initialize_thickness fms_coupler_util extract_coupler_values set_coupler_values g_tracer_utils g_tracer_com g_tracer_flux_init g_tracer_set_csdiag g_tracer_set_common g_tracer_get_common g_tracer_get_4d g_tracer_get_3d g_tracer_get_2d g_tracer_get_4d_val g_tracer_get_3d_val g_tracer_get_2d_val g_tracer_get_real g_tracer_get_string g_tracer_set_2d g_tracer_set_3d g_tracer_set_4d g_tracer_set_real g_tracer_send_diag g_tracer_get_name g_tracer_get_alias g_tracer_is_prog g_tracer_get_next g_tracer_vertdiff_g generic_tracer do_generic_tracer generic_tracer_register generic_tracer_init generic_tracer_register_diag generic_tracer_coupler_get generic_tracer_coupler_accumulate generic_tracer_source generic_tracer_update_from_bottom generic_tracer_vertdiff_g generic_tracer_coupler_set generic_tracer_end generic_tracer_get_list generic_tracer_get_diag_list ideal_age_example ntr_max register_ideal_age_tracer initialize_ideal_age_tracer ideal_age_tracer_column_physics ideal_age_stock ideal_age_tracer_surface_state ideal_age_example_end idealized_hurricane mdl idealized_hurricane_wind_init idealized_hurricane_wind_forcing idealized_hurricane_wind_profile scm_idealized_hurricane_wind_forcing isomip_initialization mdl isomip_initialize_topography isomip_initialize_thickness isomip_initialize_temperature_salinity isomip_initialize_sponges isomip_tracer ntr register_isomip_tracer initialize_isomip_tracer isomip_tracer_column_physics isomip_tracer_surface_state isomip_tracer_end kdtree kelvin_initialization register_kelvin_obc kelvin_obc_end kelvin_initialize_topography kelvin_set_obc_data lock_exchange_initialization lock_exchange_initialize_thickness meso_surface_forcing first_call meso_buoyancy_forcing meso_surface_forcing_init mom id_clock_ocean id_clock_dynamics id_clock_thermo id_clock_tracer id_clock_diabatic id_clock_adiabatic id_clock_continuity id_clock_thick_diff id_clock_bbl_visc id_clock_ml_restrat id_clock_diagnostics id_clock_z_diag id_clock_init id_clock_mom_init id_clock_pass id_clock_pass_init id_clock_ale id_clock_other id_clock_offline_tracer id_clock_unit_tests step_mom step_mom_dynamics step_mom_tracer_dyn step_mom_thermo step_offline initialize_mom finish_mom_initialization register_diags mom_timing_init set_restart_fields adjust_ssh_for_p_atm extract_surface_state rotate_initial_state mom_state_is_synchronized get_mom_state_elements get_ocean_stocks mom_end mom_ale ale_init ale_register_diags adjustgridforintegrity ale_end ale_main ale_main_offline ale_offline_inputs ale_offline_tracer_final check_grid ale_build_grid ale_regrid_accelerated remap_all_state_vars ale_remap_scalar ts_plm_edge_values ale_plm_edge_values ts_ppm_edge_values ale_initregridding ale_getcoordinate ale_getcoordinateunits ale_remap_init_conds ale_update_regrid_weights ale_updateverticalgridtype ale_writecoordinatefile ale_initthicknesstocoord mom_ale_sponge initialize_ale_sponge_fixed get_ale_sponge_nz_data get_ale_sponge_thicknesses initialize_ale_sponge_varying init_ale_sponge_diags set_up_ale_sponge_field_fixed set_up_ale_sponge_field_varying set_up_ale_sponge_vel_field_fixed set_up_ale_sponge_vel_field_varying apply_ale_sponge rotate_ale_sponge update_ale_sponge_field ale_sponge_end mom_array_transform rotate_array_real_2d rotate_array_real_3d rotate_array_real_4d rotate_array_integer rotate_array_logical rotate_array_pair_real_2d rotate_array_pair_real_3d rotate_array_pair_integer rotate_vector_real_2d rotate_vector_real_3d rotate_vector_real_4d allocate_rotated_array_real_2d allocate_rotated_array_real_3d allocate_rotated_array_real_4d allocate_rotated_array_integer mom_barotropic id_clock_sync id_clock_calc id_clock_calc_pre id_clock_calc_post id_clock_pass_step id_clock_pass_pre id_clock_pass_post harmonic arithmetic hybrid from_bt_cont hybrid_bt_cont hybrid_string harmonic_string arithmetic_string bt_cont_string btstep set_dtbt apply_velocity_obcs set_up_bt_obc destroy_bt_obc btcalc find_uhbt find_duhbt_du uhbt_to_ubt find_vhbt find_dvhbt_dv vhbt_to_vbt set_local_bt_cont_types adjust_local_bt_cont_types bt_cont_to_face_areas swap find_face_areas bt_mass_source barotropic_init barotropic_get_tav barotropic_end register_barotropic_restarts mom_bkgnd_mixing mdl bkgnd_mixing_init calculate_bkgnd_mixing cvmix_bkgnd_is_used check_bkgnd_scheme bkgnd_mixing_end mom_boundary_update id_clock_pass call_obc_register update_obc_data obc_register_end mom_bulk_mixed_layer id_clock_detrain id_clock_mech id_clock_conv id_clock_adjustment id_clock_eos id_clock_resort id_clock_pass bulkmixedlayer convective_adjustment mixedlayer_convection find_starting_tke mechanical_entrainment sort_ml resort_ml mixedlayer_detrain_2 mixedlayer_detrain_1 bulkmixedlayer_init ef4 mom_checksum_packages mom_state_chksum_5arg mom_state_chksum_3arg mom_thermo_chksum mom_surface_chksum mom_accel_chksum mom_state_stats mom_checksums bc_modulus default_shift calculatestatistics writechksums checkfornans chksum0 zchksum chksum_pair_h_2d chksum_pair_h_3d chksum_h_2d chksum_pair_b_2d chksum_pair_b_3d chksum_b_2d chksum_uv_2d chksum_uv_3d chksum_u_2d chksum_v_2d chksum_h_3d chksum_b_3d chksum_u_3d chksum_v_3d chksum1d chksum2d chksum3d is_nan_0d is_nan_1d is_nan_2d is_nan_3d chk_sum_msg1 chk_sum_msg5 chk_sum_msg_nsew chk_sum_msg_s chk_sum_msg_w chk_sum_msg2 chk_sum_msg3 mom_checksums_init chksum_error bitcount mom_coms prec r_prec i_prec max_count_prec ni pr i_pr max_efp_float overflow_error nan_error debug reproducing_efp_sum_2d reproducing_sum_2d reproducing_sum_3d real_to_ints ints_to_real increment_ints increment_ints_faster carry_overflow regularize_ints query_efp_overflow_error reset_efp_overflow_error efp_plus efp_minus efp_assign efp_to_real efp_real_diff real_to_efp efp_list_sum_across_pes efp_val_sum_across_pes mom_infra_end mom_constants celsius_kelvin_offset mom_continuity ppm_scheme ppm_string continuity continuity_init continuity_stencil continuity_end mom_continuity_ppm id_clock_update id_clock_correct continuity_ppm zonal_mass_flux zonal_flux_layer zonal_face_thickness zonal_flux_adjust set_zonal_bt_cont meridional_mass_flux merid_flux_layer merid_face_thickness meridional_flux_adjust set_merid_bt_cont ppm_reconstruction_x ppm_reconstruction_y ppm_limit_pos ppm_limit_cw84 ratio_max continuity_ppm_init continuity_ppm_stencil continuity_ppm_end mom_controlled_forcing apply_ctrl_forcing periodic_int periodic_real register_ctrl_forcing_restarts controlled_forcing_init controlled_forcing_end mom_coord_initialization mdl mom_initialize_coord set_coord_from_gprime set_coord_from_layer_density set_coord_from_ts_ref set_coord_from_ts_profile set_coord_from_ts_range set_coord_from_file set_coord_linear set_coord_to_none write_vertgrid_file mom_coriolisadv sadourny75_energy arakawa_hsu90 robust_enstro sadourny75_enstro arakawa_lamb81 al_blend sadourny75_energy_string arakawa_hsu_string robust_enstro_string sadourny75_enstro_string arakawa_lamb_string al_blend_string ke_arakawa ke_simple_gudonov ke_gudonov ke_arakawa_string ke_simple_gudonov_string ke_gudonov_string pv_adv_centered pv_adv_upwind1 pv_adv_centered_string pv_adv_upwind1_string coradcalc gradke coriolisadv_init coriolisadv_end mom_cpu_clock cpu_clock_id mom_cvmix_conv mdl cvmix_conv_init calculate_cvmix_conv cvmix_conv_is_used cvmix_conv_end mom_cvmix_ddiff mdl cvmix_ddiff_init compute_ddiff_coeffs cvmix_ddiff_is_used cvmix_ddiff_end mom_cvmix_kpp id_clock_kpp_calc id_clock_kpp_compute_bld id_clock_kpp_smoothing nlt_shape_cvmix nlt_shape_linear nlt_shape_parabolic nlt_shape_cubic nlt_shape_cubic_lmd sw_method_all_sw sw_method_mxl_sw sw_method_lv1_sw lt_k_constant lt_k_scaled lt_k_mode_constant lt_k_mode_vr12 lt_k_mode_rw16 lt_vt2_mode_constant lt_vt2_mode_vr12 lt_vt2_mode_rw16 lt_vt2_mode_lf17 kpp_init kpp_calculate kpp_compute_bld kpp_smooth_bld kpp_get_bld kpp_nonlocaltransport_temp kpp_nonlocaltransport_saln kpp_end mom_cvmix_shear mdl calculate_cvmix_shear cvmix_shear_init cvmix_shear_is_used cvmix_shear_end mom_debugging max_redundant_prints redundant_prints debug debug_chksums debug_redundant mom_debugging_init check_redundant_vc3d check_redundant_vc2d check_redundant_sb3d check_redundant_sb2d check_redundant_vb3d check_redundant_vb2d check_redundant_st3d check_redundant_st2d check_redundant_vt3d check_redundant_vt2d chksum_vec_c3d chksum_vec_c2d chksum_vec_b3d chksum_vec_b2d chksum_vec_a3d chksum_vec_a2d totalstuff totaltands check_column_integral check_column_integrals mom_density_integrals int_density_dz int_density_dz_generic_pcm int_density_dz_generic_plm int_density_dz_generic_ppm int_specific_vol_dp int_spec_vol_dp_generic_pcm int_spec_vol_dp_generic_plm find_depth_of_pressure_in_cell frac_dp_at_pos mom_diabatic_aux id_clock_uv_at_h id_clock_frazil make_frazil differential_diffuse_t_s adjust_salt tridiagts find_uv_at_h set_pen_shortwave diagnosemldbydensitydifference diagnosemldbyenergy applyboundaryfluxesinout diabatic_aux_init diabatic_aux_end mom_diabatic_driver id_clock_entrain id_clock_mixedlayer id_clock_set_diffusivity id_clock_tracers id_clock_tridiag id_clock_pass id_clock_sponge id_clock_geothermal id_clock_differential_diff id_clock_remap id_clock_kpp diabatic diabatic_ale_legacy diabatic_ale layered_diabatic extract_diabatic_member adiabatic diagnose_diabatic_diff_tendency diagnose_boundary_forcing_tendency diagnose_frazil_tendency adiabatic_driver_init diabatic_driver_init diabatic_driver_end mom_diag_manager_wrapper register_diag_field_array_fms register_diag_field_scalar_fms mom_diag_mediator id_clock_diag_mediator id_clock_diag_remap id_clock_diag_grid_updates psp pss psm pmp pmm spp sps ssp mpp mpm mmp mms sss mmm msk set_axes_info set_axes_info_dsamp set_masks_for_axes set_masks_for_axes_dsamp diag_register_area_ids register_cell_measure diag_associate_volume_cell_measure diag_get_volume_cell_measure_dm_id define_axes_group define_axes_group_dsamp set_diag_mediator_grid post_data_0d post_data_1d_k post_data_2d post_data_2d_low post_data_3d post_data_3d_low post_xy_average enable_averaging enable_averages disable_averaging query_averaging_enabled get_diag_time_end register_diag_field register_diag_field_expand_cmor register_diag_field_expand_axes add_diag_to_list add_xyz_method attach_cell_methods register_scalar_field register_static_field describe_option ocean_register_diag diag_mediator_infrastructure_init diag_mediator_init diag_set_state_ptrs diag_update_remap_grids diag_masks_set diag_mediator_close_registration diag_mediator_end i2s get_new_diag_id initialize_diag_type alloc_diag_with_id log_available_diag log_chksum_diag diag_grid_storage_init diag_copy_diag_to_storage diag_copy_storage_to_diag diag_save_grids diag_restore_grids diag_grid_storage_end downsample_diag_masks_set downsample_diag_indices_get downsample_diag_field_3d downsample_diag_field_2d downsample_field_3d downsample_field_2d downsample_mask_2d downsample_mask_3d mom_diag_remap diag_remap_init diag_remap_end diag_remap_diag_registration_closed diag_remap_set_active diag_remap_configure_axes diag_remap_get_axes_info diag_remap_axes_configured diag_remap_update diag_remap_do_remap diag_remap_calc_hmask vertically_reintegrate_diag_field vertically_interpolate_diag_field horizontally_average_diag_field mom_diag_vkernels interpolate_column reintegrate_column diag_vkernels_unit_tests test_interp test_reintegrate mom_diagnostics calculate_diagnostic_fields find_weights calculate_vertical_integrals calculate_energy_diagnostics register_time_deriv calculate_derivs post_surface_dyn_diags post_surface_thermo_diags post_transport_diagnostics mom_diagnostics_init register_surface_diags register_transport_diags write_static_fields set_dependent_diagnostics mom_diagnostics_end mom_diapyc_energy_req diapyc_energy_req_test diapyc_energy_req_calc find_pe_chg find_pe_chg_orig diapyc_energy_req_init diapyc_energy_req_end mom_document mlen string_true string_false doc_param_none doc_param_logical doc_param_logical_array doc_param_int doc_param_int_array doc_param_real doc_param_real_array doc_param_char doc_openblock doc_closeblock doc_param_time writemessageanddesc time_string real_string real_array_string testformattedfloatisreal int_string logical_string define_string undef_string doc_module doc_subroutine doc_function doc_init open_doc_file find_unused_unit_number doc_end mesghasbeendocumented mom_domains to_all pass_var_3d pass_var_2d pass_var_start_2d pass_var_start_3d pass_var_complete_2d pass_var_complete_3d pass_vector_2d fill_vector_symmetric_edges_2d pass_vector_3d pass_vector_start_2d pass_vector_start_3d pass_vector_complete_2d pass_vector_complete_3d create_var_group_pass_2d create_var_group_pass_3d create_vector_group_pass_2d create_vector_group_pass_3d do_group_pass start_group_pass complete_group_pass mom_domains_init clone_md_to_md clone_md_to_d2d get_domain_extent get_domain_extent_dsamp2 get_simple_array_i_ind get_simple_array_j_ind get_global_shape mom_dyn_horgrid create_dyn_horgrid rescale_dyn_horgrid_bathymetry set_derived_dyn_horgrid adcroft_reciprocal destroy_dyn_horgrid mom_dynamics_split_rk2 id_clock_cor id_clock_pres id_clock_vertvisc id_clock_horvisc id_clock_mom_update id_clock_continuity id_clock_thick_diff id_clock_btstep id_clock_btcalc id_clock_btforce id_clock_pass id_clock_pass_init step_mom_dyn_split_rk2 register_restarts_dyn_split_rk2 initialize_dyn_split_rk2 end_dyn_split_rk2 mom_dynamics_unsplit id_clock_cor id_clock_pres id_clock_vertvisc id_clock_continuity id_clock_horvisc id_clock_mom_update id_clock_pass id_clock_pass_init step_mom_dyn_unsplit register_restarts_dyn_unsplit initialize_dyn_unsplit end_dyn_unsplit mom_dynamics_unsplit_rk2 id_clock_cor id_clock_pres id_clock_vertvisc id_clock_horvisc id_clock_continuity id_clock_mom_update id_clock_pass id_clock_pass_init step_mom_dyn_unsplit_rk2 register_restarts_dyn_unsplit_rk2 initialize_dyn_unsplit_rk2 end_dyn_unsplit_rk2 MOM_energetic_PBL mom_energetic_pbl use_fixed_mstar mstar_from_ekman mstar_from_rh18 no_langmuir langmuir_rescale langmuir_add wt_from_croot_tke wt_from_rh18 constant_string om4_string rh18_string root_tke_string none_string rescaled_string additive_string report_avg_its energetic_pbl epbl_column find_pe_chg find_pe_chg_orig find_mstar mstar_langmuir energetic_pbl_get_mld energetic_pbl_init energetic_pbl_end mom_entrain_diffusive entrainment_diffusive f_to_ent set_ent_bl determine_dskb f_kb_to_ea_kb determine_ea_kb find_maxf_kb entrain_diffusive_init entrain_diffusive_end mom_eos eos_linear eos_unesco eos_wright eos_teos10 eos_nemo eos_linear_string eos_unesco_string eos_wright_string eos_teos10_string eos_nemo_string eos_default tfreeze_linear tfreeze_millero tfreeze_teos10 tfreeze_linear_string tfreeze_millero_string tfreeze_teos10_string tfreeze_default calculate_density_scalar calculate_stanley_density_scalar calculate_density_array calculate_stanley_density_array calculate_density_1d calculate_stanley_density_1d calculate_spec_vol_array calc_spec_vol_scalar calc_spec_vol_1d calculate_tfreeze_scalar calculate_tfreeze_array calculate_density_derivs_array calculate_density_derivs_1d calculate_density_derivs_scalar calculate_density_second_derivs_array calculate_density_second_derivs_scalar calculate_spec_vol_derivs_array calc_spec_vol_derivs_1d calculate_compress_array calculate_compress_scalar eos_domain analytic_int_specific_vol_dp analytic_int_density_dz query_compressible eos_init eos_manual_init eos_allocate eos_end eos_use_linear convert_temp_salt_for_teos10 eos_quadrature extract_member_eos mom_eos_linear calculate_density_scalar_linear calculate_density_array_linear calculate_spec_vol_scalar_linear calculate_spec_vol_array_linear calculate_density_derivs_array_linear calculate_density_derivs_scalar_linear calculate_density_second_derivs_scalar_linear calculate_density_second_derivs_array_linear calculate_specvol_derivs_linear calculate_compress_linear int_density_dz_linear int_spec_vol_dp_linear mom_eos_nemo rdeltas r1_s0 r1_t0 r1_p0 r00 r01 r02 r03 r04 r05 eos000 eos100 eos200 eos300 eos400 eos500 eos600 eos010 eos110 eos210 eos310 eos410 eos510 eos020 eos120 eos220 eos320 eos420 eos030 eos130 eos230 eos330 eos040 eos140 eos240 eos050 eos150 eos060 eos001 eos101 eos201 eos301 eos401 eos011 eos111 eos211 eos311 eos021 eos121 eos221 eos031 eos131 eos041 eos002 eos102 eos202 eos012 eos112 eos022 eos003 eos103 eos013 alp000 alp100 alp200 alp300 alp400 alp500 alp010 alp110 alp210 alp310 alp410 alp020 alp120 alp220 alp320 alp030 alp130 alp230 alp040 alp140 alp050 alp001 alp101 alp201 alp301 alp011 alp111 alp211 alp021 alp121 alp031 alp002 alp102 alp012 alp003 bet000 bet100 bet200 bet300 bet400 bet500 bet010 bet110 bet210 bet310 bet410 bet020 bet120 bet220 bet320 bet030 bet130 bet230 bet040 bet140 bet050 bet001 bet101 bet201 bet301 bet011 bet111 bet211 bet021 bet121 bet031 bet002 bet102 bet012 bet003 pa2db calculate_density_scalar_nemo calculate_density_array_nemo calculate_density_derivs_array_nemo calculate_density_derivs_scalar_nemo calculate_compress_nemo mom_eos_teos10 pa2db calculate_density_scalar_teos10 calculate_density_array_teos10 calculate_spec_vol_scalar_teos10 calculate_spec_vol_array_teos10 calculate_density_derivs_array_teos10 calculate_density_derivs_scalar_teos10 calculate_specvol_derivs_teos10 calculate_density_second_derivs_scalar_teos10 calculate_density_second_derivs_array_teos10 calculate_compress_teos10 mom_eos_unesco r00 r10 r20 r30 r40 r50 r01 r11 r21 r31 r41 r032 r132 r232 r02 s00 s10 s20 s30 s40 s01 s11 s21 s31 s032 s132 s232 sp00 sp10 sp20 sp30 sp01 sp11 sp21 sp032 sp000 sp010 sp020 sp001 sp011 sp021 calculate_density_scalar_unesco calculate_density_array_unesco calculate_spec_vol_scalar_unesco calculate_spec_vol_array_unesco calculate_density_derivs_unesco calculate_compress_unesco mom_eos_wright a0 a1 a2 b0 b1 b2 b3 b4 b5 c0 c1 c2 c3 c4 c5 calculate_density_scalar_wright calculate_density_array_wright calculate_spec_vol_scalar_wright calculate_spec_vol_array_wright calculate_density_derivs_array_wright calculate_density_derivs_scalar_wright calculate_density_second_derivs_array_wright calculate_density_second_derivs_scalar_wright calculate_specvol_derivs_wright calculate_compress_wright int_density_dz_wright int_spec_vol_dp_wright mom_error_handler verbosity calltreeindentlevel is_root_pe mom_mesg mom_error mom_set_verbosity mom_get_verbosity mom_verbose_enough calltree_showquery calltree_enter calltree_leave calltree_waypoint assert mom_file_parser report_unused_default unused_params_fatal_default log_to_stdout_default complete_doc_default minimal_doc_default max_param_files input_str_length filename_length all_pes_read open_param_file close_param_file populate_param_data openmultilinecomment closemultilinecomment lastnoncommentindex lastnoncommentnonblank replacetabs removecomments simplifywhitespace read_param_int read_param_int_array read_param_real read_param_real_array read_param_char read_param_char_array read_param_logical read_param_time strip_quotes get_variable_line flag_line_as_read overridewarninghasbeenissued log_version_cs log_version_plain log_param_int log_param_int_array log_param_real log_param_real_array log_param_logical log_param_char log_param_time convert_date_to_string get_param_int get_param_int_array get_param_real get_param_real_array get_param_char get_param_char_array get_param_logical get_param_time clearparameterblock openparameterblock closeparameterblock pushblocklevel popblocklevel mom_fixed_initialization mom_initialize_fixed mom_initialize_topography mom_forcing_type extractfluxes1d extractfluxes2d calculatebuoyancyflux1d calculatebuoyancyflux2d mom_forcing_chksum mom_mech_forcing_chksum mech_forcing_singlepointprint forcing_singlepointprint register_forcing_type_diags forcing_accumulate fluxes_accumulate copy_common_forcing_fields set_derived_forcing_fields set_net_mass_forcing get_net_mass_forcing copy_back_forcing_fields mech_forcing_diags forcing_diagnostics allocate_forcing_by_group allocate_forcing_by_ref allocate_mech_forcing_by_group allocate_mech_forcing_from_ref get_forcing_groups get_mech_forcing_groups myalloc deallocate_forcing_type deallocate_mech_forcing rotate_forcing rotate_mech_forcing mom_full_convection full_convection is_unstable smoothed_drdt_drds mom_generic_tracer g_registered register_mom_generic_tracer initialize_mom_generic_tracer mom_generic_tracer_column_physics mom_generic_tracer_stock mom_generic_tracer_min_max mom_generic_tracer_surface_state mom_generic_flux_init mom_generic_tracer_fluxes_accumulate mom_generic_tracer_get end_mom_generic_tracer mom_geothermal geothermal_entraining geothermal_in_place geothermal_init geothermal_end mom_get_input get_mom_input mom_grid mom_grid_init rescale_grid_bathymetry set_derived_metrics adcroft_reciprocal ispointincell set_first_direction get_global_grid_size allocate_metrics mom_grid_end mom_grid_initialize set_grid_metrics grid_metrics_chksum set_grid_metrics_from_mosaic set_grid_metrics_cartesian set_grid_metrics_spherical set_grid_metrics_mercator ds_di ds_dj dl find_root dx_di int_di_dx dy_dj int_dj_dy extrapolate_metric adcroft_reciprocal initialize_masks mom_hor_index hor_index_init hit_assign rotate_hor_index mom_hor_visc horizontal_viscosity hor_visc_init align_aniso_tensor_to_grid smooth_gme hor_visc_end mom_horizontal_regridding mystats fill_miss_2d horiz_interp_and_extrap_tracer_record horiz_interp_and_extrap_tracer_fms_id meshgrid fill_boundaries_int fill_boundaries_real smooth_heights mom_ice_shelf id_clock_shelf id_clock_pass shelf_calc_flux change_thickness_using_melt add_shelf_forces add_shelf_pressure add_shelf_flux initialize_ice_shelf initialize_shelf_mass update_shelf_mass ice_shelf_save_restart ice_shelf_end solo_step_ice_shelf mom_ice_shelf_dynamics slope_limiter quad_area register_ice_shelf_dyn_restarts initialize_ice_shelf_dyn initialize_diagnostic_fields ice_time_step_cfl update_ice_shelf ice_shelf_advect ice_shelf_solve_outer ice_shelf_solve_inner ice_shelf_advect_thickness_x ice_shelf_advect_thickness_y shelf_advance_front ice_shelf_min_thickness_calve calve_to_mask calc_shelf_driving_stress init_boundary_values cg_action cg_action_subgrid_basal matrix_diagonal cg_diagonal_subgrid_basal apply_boundary_values calc_shelf_visc update_od_ffrac update_od_ffrac_uncoupled bilinear_shape_functions bilinear_shape_fn_grid bilinear_shape_functions_subgrid update_velocity_masks interpolate_h_to_b ice_shelf_dyn_end ice_shelf_temp ice_shelf_advect_temp_x ice_shelf_advect_temp_y mom_ice_shelf_initialize initialize_ice_thickness initialize_ice_thickness_from_file initialize_ice_thickness_channel mom_ice_shelf_state ice_shelf_state_init ice_shelf_state_end mom_int_tide_input set_int_tide_input find_n2_bottom int_tide_input_init int_tide_input_end mom_interface_heights find_eta_3d find_eta_2d mom_internal_tides propagate_int_tide sum_en itidal_lowmode_loss get_lowmode_loss refract ppm_angular_advect propagate propagate_corner_spread propagate_x propagate_y zonal_flux_en merid_flux_en reflect teleport correct_halo_rotation ppm_reconstruction_x ppm_reconstruction_y ppm_limit_pos internal_tides_init internal_tides_end mom_intrinsic_functions invcosh mom_io create_file reopen_file read_axis_data num_timelevels var_desc modify_vardesc cmor_long_std query_vardesc safe_string_copy ensembler mom_file_exists fms_file_exists mom_read_data_1d mom_read_data_2d mom_read_data_3d mom_read_data_4d mom_read_vector_2d mom_read_vector_3d mom_io_init mom_isopycnal_slopes calc_isoneutral_slopes vert_fill_ts mom_kappa_shear calculate_kappa_shear calc_kappa_shear_vertex kappa_shear_column calculate_projected_state find_kappa_tke kappa_shear_init kappa_shear_is_used kappa_shear_at_vertex mom_lateral_boundary_diffusion surface bottom mdl lateral_boundary_diffusion_init lateral_boundary_diffusion bulk_average harmonic_mean boundary_k_range fluxes_layer_method fluxes_bulk_method near_boundary_unit_tests test_layer_fluxes test_boundary_k_range mom_lateral_mixing_coeffs calc_depth_function calc_resoln_function calc_slope_functions calc_visbeck_coeffs calc_slope_functions_using_just_e calc_qg_leith_viscosity varmix_init mom_marine_ice iceberg_forces iceberg_fluxes marine_ice_init mom_meke step_forward_meke meke_equilibrium meke_equilibrium_restoring meke_lengthscales meke_lengthscales_0d meke_init meke_alloc_register_restart meke_end mom_meke_types mom_mixed_layer_restrat mdl mixedlayer_restrat mixedlayer_restrat_general mixedlayer_restrat_bml mixedlayer_restrat_init mixedlayer_restrat_register_restarts mom_neutral_diffusion mdl neutral_diffusion_init neutral_diffusion_calc_coeffs neutral_diffusion interface_scalar ppm_edge ppm_ave signum plm_diff fv_diff fvlsq_slope find_neutral_surface_positions_continuous interpolate_for_nondim_position find_neutral_surface_positions_discontinuous mark_unstable_cells search_other_column increment_interface find_neutral_pos_linear find_neutral_pos_full calc_delta_rho_and_derivs delta_rho_from_derivs absolute_position absolute_positions neutral_surface_flux neutral_surface_t_eval ppm_left_right_edge_values neutral_diffusion_unit_tests ndiff_unit_tests_continuous ndiff_unit_tests_discontinuous test_fv_diff test_fvlsq_slope test_ifndp test_data1d test_data1di test_nsp compare_nsp_row test_rnp neutral_diffusion_end mom_obsolete_diagnostics register_obsolete_diagnostics found_in_diagtable mom_obsolete_params find_obsolete_params obsolete_logical obsolete_char obsolete_real obsolete_int mom_ocmip2_cfc ntr register_ocmip2_cfc flux_init_ocmip2_cfc initialize_ocmip2_cfc init_tracer_cfc ocmip2_cfc_column_physics ocmip2_cfc_stock ocmip2_cfc_surface_state ocmip2_cfc_end MOM_oda_driver_mod mom_oda_driver_mod no_assim oi_assim eakf_assim init_oda set_prior_tracer get_posterior_tracer oda oda_end init_ocean_ensemble set_analysis_time save_obs_diff apply_oda_tracer_increments mom_offline_aux update_h_horizontal_flux update_h_vertical_flux limit_mass_flux_3d distribute_residual_uh_barotropic distribute_residual_vh_barotropic distribute_residual_uh_upwards distribute_residual_vh_upwards offline_add_diurnal_sw update_offline_from_files update_offline_from_arrays next_modulo_time mom_offline_main offline_advection_ale offline_redistribute_residual remaining_transport_sum offline_diabatic_ale offline_fw_fluxes_into_ocean offline_fw_fluxes_out_ocean offline_advection_layer update_offline_fields register_diags_offline_transport post_offline_convergence_diags extract_offline_main insert_offline_main offline_transport_init read_all_input offline_transport_end mom_opacity no_scheme manizza_05 morel_88 single_exp double_exp manizza_05_string morel_88_string single_exp_string double_exp_string op_diag_len set_opacity opacity_from_chl opacity_morel sw_pen_frac_morel opacity_manizza extract_optics_slice extract_optics_fields optics_nbands absorbremainingsw sumswoverbands opacity_init opacity_end mom_open_boundary obc_none obc_simple obc_wall obc_flather obc_radiation obc_direction_n obc_direction_s obc_direction_e obc_direction_w max_obc_fields id_clock_pass mdl open_boundary_config initialize_segment_data initialize_obc_tides setup_segment_indices setup_u_point_obc setup_v_point_obc parse_segment_str parse_segment_manifest_str parse_segment_data_str parse_for_tracer_reservoirs parse_segment_param_real open_boundary_init open_boundary_query open_boundary_dealloc open_boundary_end open_boundary_impose_normal_slope open_boundary_impose_land_mask setup_obc_tracer_reservoirs radiation_open_bdry_conds open_boundary_apply_normal_flow open_boundary_zero_normal_flow gradient_at_q_points set_tracer_data lookup_seg_field allocate_obc_segment_data deallocate_obc_segment_data open_boundary_test_extern_uv open_boundary_test_extern_h update_obc_segment_data update_obc_ramp register_obc obc_registry_init register_file_obc file_obc_end segment_tracer_registry_init register_segment_tracer segment_tracer_registry_end register_temp_salt_segments fill_temp_salt_segments mask_outside_obcs flood_fill flood_fill2 open_boundary_register_restarts update_segment_tracer_reservoirs adjustsegmentetatofitbathymetry rotate_obc_config rotate_obc_segment_config rotate_obc_init rotate_obc_segment_data mom_pointaccel write_u_accel write_v_accel pointaccel_init mom_pressureforce pressureforce pressureforce_init pressureforce_end mom_pressureforce_fv pressureforce_fv_nonbouss pressureforce_fv_bouss pressureforce_fv_init pressureforce_fv_end mom_pressureforce_mont pressureforce_mont_nonbouss pressureforce_mont_bouss set_pbce_bouss set_pbce_nonbouss pressureforce_mont_init pressureforce_mont_end mom_random random_01 random_norm random_2d_01 random_2d_norm random_0d_constructor random_2d_constructor seed_from_time seed_from_index random_destruct random_unit_tests test_fn mom_regridding regriddingcoordinatemodedoc regriddinginterpschemedoc regriddingdefaultinterpscheme regriddingdefaultboundaryextrapolation regriddingdefaultminthickness initialize_regridding check_grid_def end_regridding regridding_main calc_h_new_by_dz check_remapping_grid check_grid_column filtered_grid_motion build_zstar_grid build_sigma_grid build_rho_grid build_grid_hycom1 build_grid_adaptive build_grid_slight adjust_interface_motion build_grid_arbitrary inflate_vanished_layers_old convective_adjustment uniformresolution initcoord setcoordinateresolution set_target_densities_from_gv set_target_densities set_regrid_max_depths set_regrid_max_thickness getcoordinateresolution getcoordinateinterfaces getcoordinateunits getcoordinateshortname set_regrid_params get_regrid_size get_zlike_cs get_sigma_cs get_rho_cs getstaticthickness dz_function1 rho_function1 mom_regularize_layers id_clock_pass id_clock_eos regularize_layers regularize_surface find_deficit_ratios regularize_layers_init mom_remapping remapping_pcm remapping_plm remapping_ppm_h4 remapping_ppm_ih4 remapping_pqm_ih4ih3 remapping_pqm_ih6ih5 integration_pcm integration_plm integration_ppm integration_pqm mdl remappingschemesdoc remappingdefaultscheme hneglect_dflt old_algorithm remapping_set_param extract_member_remapping_cs buildgridfromh ispossumerrsignificant remapping_core_h remapping_core_w build_reconstructions_1d check_reconstructions_1d remap_via_sub_cells average_value_ppoly measure_input_bounds measure_output_bounds remapbyprojection remapbydeltaz integraterecononinterval dzfromh1h2 initialize_remapping setreconstructiontype end_remapping remapping_unit_tests test_answer dumpgrid mom_restart register_restart_field_as_obsolete register_restart_field_ptr3d register_restart_field_ptr4d register_restart_field_ptr2d register_restart_field_ptr1d register_restart_field_ptr0d register_restart_pair_ptr2d register_restart_pair_ptr3d register_restart_pair_ptr4d register_restart_field_4d register_restart_field_3d register_restart_field_2d register_restart_field_1d register_restart_field_0d query_initialized_name query_initialized_0d query_initialized_1d query_initialized_2d query_initialized_3d query_initialized_4d query_initialized_0d_name query_initialized_1d_name query_initialized_2d_name query_initialized_3d_name query_initialized_4d_name save_restart restore_state restart_files_exist determine_is_new_run is_new_run open_restart_units restart_init restart_init_end restart_end restart_error get_checksum_loop_ranges mom_safe_alloc safe_alloc_ptr_1d safe_alloc_ptr_2d_2arg safe_alloc_ptr_3d_3arg safe_alloc_ptr_2d safe_alloc_ptr_3d safe_alloc_ptr_3d_6arg safe_alloc_allocatable_2d safe_alloc_allocatable_3d safe_alloc_allocatable_3d_6arg mom_set_diffusivity id_clock_kappashear id_clock_cvmix_ddiff set_diffusivity find_tke_to_kd find_n2 double_diffusion add_drag_diffusivity add_lotw_bbl_diffusivity add_mlrad_diffusivity set_bbl_tke set_density_ratios set_diffusivity_init set_diffusivity_end mom_set_visc set_viscous_bbl set_v_at_u set_u_at_v set_viscous_ml set_visc_register_restarts set_visc_init set_visc_end mom_shared_initialization mom_shared_init_init mom_initialize_rotation mom_calculate_grad_coriolis diagnosemaximumdepth initialize_topography_from_file apply_topography_edits_from_file initialize_topography_named limit_topography set_rotation_planetary set_rotation_beta_plane initialize_grid_rotation_angle modulo_around_point reset_face_lengths_named reset_face_lengths_file reset_face_lengths_list read_face_length_list set_velocity_depth_max set_velocity_depth_min compute_global_grid_integrals write_ocean_geometry_file mom_spatial_means global_area_mean global_area_integral global_layer_mean global_volume_mean global_mass_integral global_i_mean global_j_mean adjust_area_mean_to_zero mom_sponge initialize_sponge init_sponge_diags set_up_sponge_field set_up_sponge_ml_density apply_sponge sponge_end mom_state_initialization mdl mom_initialize_state initialize_thickness_from_file adjustetatofitbathymetry initialize_thickness_uniform initialize_thickness_list initialize_thickness_search convert_thickness depress_surface trim_for_ice cut_off_column_top initialize_velocity_from_file initialize_velocity_zero initialize_velocity_uniform initialize_velocity_circular initialize_temp_salt_from_file initialize_temp_salt_from_profile initialize_temp_salt_fit initialize_temp_salt_linear initialize_sponges_file set_velocity_depth_max compute_global_grid_integrals set_velocity_depth_min mom_temp_salt_initialize_from_z find_interfaces mom_state_init_tests mom_string_functions lowercase uppercase left_int left_ints left_real left_reals isformattedfloatequalto extractword extract_word extract_integer extract_real remove_spaces string_functions_unit_tests localtests localtesti localtestr slasher mom_sum_output num_fields depth_chksum_attr area_chksum_attr mom_sum_output_init mom_sum_output_end write_energy accumulate_net_input depth_list_setup create_depth_list write_depth_list read_depth_list get_depth_list_checksums mom_surface_forcing id_clock_forcing set_forcing wind_forcing_const wind_forcing_2gyre wind_forcing_1gyre wind_forcing_gyres neverworld_wind_forcing scurve_wind_forcing scurve wind_forcing_from_file wind_forcing_by_data_override buoyancy_forcing_from_files buoyancy_forcing_from_data_override buoyancy_forcing_zero buoyancy_forcing_const buoyancy_forcing_linear forcing_save_restart surface_forcing_init surface_forcing_end mom_surface_forcing_gfdl id_clock_forcing convert_iob_to_fluxes convert_iob_to_forces extract_iob_stresses apply_flux_adjustments apply_force_adjustments forcing_save_restart surface_forcing_init surface_forcing_end ice_ocn_bnd_type_chksum check_mask_val_consistency mom_tfreeze calculate_tfreeze_linear_scalar calculate_tfreeze_linear_array calculate_tfreeze_millero_scalar calculate_tfreeze_millero_array calculate_tfreeze_teos10_scalar calculate_tfreeze_teos10_array mom_thickness_diffuse thickness_diffuse thickness_diffuse_full streamfn_solver add_detangling_kh thickness_diffuse_init thickness_diffuse_get_kh thickness_diffuse_end mom_tidal_forcing max_constituents id_clock_tides astro_longitudes_init eq_phase tidal_frequency nodal_fu tidal_forcing_init find_in_files tidal_forcing_sensitivity calc_tidal_forcing tidal_forcing_end mom_tidal_mixing stlaurent_profile_string polzin_profile_string stlaurent_02 polzin_09 simmons_scheme_string schmittner_scheme_string simmons schmittner tidal_mixing_init calculate_tidal_mixing calculate_cvmix_tidal add_int_tide_diffusivity setup_tidal_diagnostics post_tidal_diagnostics tidal_mixing_h_amp read_tidal_energy read_tidal_constituents tidal_mixing_end mom_time_manager real_to_time mom_tracer_advect id_clock_advect id_clock_pass id_clock_sync advect_tracer advect_x advect_y tracer_advect_init tracer_advect_end mom_tracer_diabatic tracer_vertdiff applytracerboundaryfluxesinout MOM_tracer_flow_control mom_tracer_flow_control call_tracer_flux_init call_tracer_register tracer_flow_control_init get_chl_from_model call_tracer_set_forcing call_tracer_column_fns call_tracer_stocks store_stocks call_tracer_surface_state tracer_flow_control_end mom_tracer_hor_diff id_clock_diffuse id_clock_epimix id_clock_pass id_clock_sync tracer_hordiff tracer_epipycnal_ml_diff tracer_hor_diff_init tracer_hor_diff_end mom_tracer_initialization_from_z mdl mom_initialize_tracer_from_z mom_tracer_registry register_tracer lock_tracer_registry register_tracer_diagnostics preale_tracer_diagnostics postale_tracer_diagnostics post_tracer_diagnostics_at_sync post_tracer_transport_diagnostics mom_tracer_chksum mom_tracer_chkinv tracer_name_lookup tracer_registry_init tracer_registry_end mom_tracer_z_init tracer_z_init tracer_z_init_array read_z_edges find_overlap find_limited_slope determine_temperature mom_transcribe_grid copy_dyngrid_to_mom_grid copy_mom_grid_to_dyngrid rotate_dyngrid mom_transform_fms rotated_mpp_chksum_real_0d rotated_mpp_chksum_real_1d rotated_mpp_chksum_real_2d rotated_mpp_chksum_real_3d rotated_mpp_chksum_real_4d rotated_write_field_real_0d rotated_write_field_real_1d rotated_write_field_real_2d rotated_write_field_real_3d rotated_write_field_real_4d rotated_time_interp_external_0d rotated_time_interp_external_2d rotated_time_interp_external_3d mom_unit_scaling unit_scaling_init fix_restart_unit_scaling unit_scaling_end mom_unit_tests unit_tests mom_variables allocate_surface_state deallocate_surface_state rotate_surface_state alloc_bt_cont_type dealloc_bt_cont_type mom_thermovar_chksum mom_vert_friction vertvisc vertvisc_remnant vertvisc_coef find_coupling_coef vertvisc_limit_vel vertvisc_init updatecfltruncationvalue vertvisc_end mom_verticalgrid verticalgridinit fix_restart_scaling get_thickness_units get_flux_units get_tr_flux_units setverticalgridaxes verticalgridend mom_wave_interface testprof surfbands dhh85 lf17 null_wavemethod dataovr coupler input tp_stkx0 tp_stky0 tp_wvl waveagepeakfreq staticwaves dhh85_is_set waveage wavewind pi wavemethod numbands partitionmode datasource surfbandfilename dataoverrideisinitialized la_frachbl la_misalignment mdl mom_wave_interface_init mom_wave_interface_init_lite update_surface_waves update_stokes_drift surface_bands_by_data_override get_langmuir_number get_stokessl_lifoxkemper get_sl_average_prof get_sl_average_band dhh85_mid stokesmixing coriolisstokes ust_2_u10_coare3p5 waves_end mom_wave_speed wave_speed tdma6 wave_speeds tridiag_det wave_speed_init wave_speed_set_param mom_wave_structure wave_structure tridiag_solver wave_structure_init mom_write_cputime clocks_per_sec max_ticks write_cputime_start_clock mom_write_cputime_init mom_write_cputime_end write_cputime NETCDF netcdf neverworld_initialization neverworld_initialize_topography cosbell spike cone scurve cstprof dist_line_fixed_x dist_line_fixed_y ns_coast ew_coast ns_ridge circ_ridge neverworld_initialize_thickness ocean_da_core_mod ocean_da_core_init get_profiles ocean_da_types_mod ocean_model_mod ocean_model_init update_ocean_model ocean_model_restart ocean_model_end ocean_model_save_restart initialize_ocean_public_type convert_state_to_ocean_type ocean_model_init_sfc ocean_model_flux_init ocean_stock_pe ocean_model_data2d_get ocean_model_data1d_get ocean_public_type_chksum get_ocean_grid ocean_model_get_uv_surf oil_tracer ntr_max register_oil_tracer initialize_oil_tracer oil_tracer_column_physics oil_stock oil_tracer_surface_state oil_tracer_end p1m_functions p1m_interpolation p1m_boundary_extrapolation p3m_functions hneglect_dflt hneglect_edge_dflt p3m_interpolation p3m_limiter p3m_boundary_extrapolation build_cubic_interpolant is_cubic_monotonic monotonize_cubic PCM_functions pcm_functions pcm_reconstruction phillips_initialization phillips_initialize_thickness phillips_initialize_velocity phillips_initialize_sponges sech phillips_initialize_topography plm_functions hneglect_dflt plm_slope_wa plm_slope_cw plm_monotonized_slope plm_extrapolate_slope plm_reconstruction plm_boundary_extrapolation polynomial_functions evaluation_polynomial first_derivative_polynomial integration_polynomial ppm_functions hneglect_dflt ppm_reconstruction ppm_limiter_standard ppm_boundary_extrapolation pqm_functions hneglect_dflt pqm_reconstruction pqm_limiter pqm_boundary_extrapolation pqm_boundary_extrapolation_v1 pseudo_salt_tracer register_pseudo_salt_tracer initialize_pseudo_salt_tracer pseudo_salt_tracer_column_physics pseudo_salt_stock pseudo_salt_tracer_surface_state pseudo_salt_tracer_end regional_dyes register_dye_tracer initialize_dye_tracer dye_tracer_column_physics dye_stock dye_tracer_surface_state regional_dyes_end regrid_consts regridding_layer regridding_zstar regridding_rho regridding_sigma regridding_arbitrary regridding_hycom1 regridding_slight regridding_sigma_shelf_zstar regridding_adaptive regridding_layer_string regridding_zstar_string_old regridding_zstar_string regridding_rho_string regridding_sigma_string regridding_arbitrary_string regridding_hycom1_string regridding_slight_string regridding_sigma_shelf_zstar_string regridding_adaptive_string default_coordinate_mode coordinatemode coordinateunitsi coordinateunitss state_dependent_char state_dependent_int regrid_edge_values hneglect_edge_dflt hneglect_dflt hminfrac bound_edge_values average_discontinuous_edge_values check_discontinuous_edge_values edge_values_explicit_h2 edge_values_explicit_h4 edge_values_implicit_h4 end_value_h4 edge_slopes_implicit_h3 edge_slopes_implicit_h5 edge_values_implicit_h6 solve_diag_dominant_tridiag linear_solver test_line regrid_interp degree_1 degree_2 degree_3 degree_4 degree_max interpolation_p1m_h2 interpolation_p1m_h4 interpolation_p1m_ih4 interpolation_plm interpolation_ppm_h4 interpolation_ppm_ih4 interpolation_p3m_ih4ih3 interpolation_p3m_ih6ih5 interpolation_pqm_ih4ih3 interpolation_pqm_ih6ih5 nr_offset nr_iterations nr_tolerance regridding_set_ppolys interpolate_grid build_and_interpolate_grid get_polynomial_coordinate interpolation_scheme set_interp_scheme set_interp_extrap regrid_solvers solve_linear_system linear_solver solve_tridiagonal_system solve_diag_dominant_tridiag rgc_initialization mod rgc_initialize_sponges rgc_tracer ntr register_rgc_tracer initialize_rgc_tracer rgc_tracer_column_physics rgc_tracer_end rossby_front_2d_initialization mdl frontfractionalwidth hmlmin hmlmax rossby_front_initialize_thickness rossby_front_initialize_temperature_salinity rossby_front_initialize_velocity ypseudo hml dtdy scm_cvmix_tests mdl scm_cvmix_tests_ts_init scm_cvmix_tests_surface_forcing_init scm_cvmix_tests_wind_forcing scm_cvmix_tests_buoyancy_forcing seamount_initialization mdl seamount_initialize_topography seamount_initialize_thickness seamount_initialize_temperature_salinity shelfwave_initialization mdl register_shelfwave_obc shelfwave_obc_end shelfwave_initialize_topography shelfwave_set_obc_data sloshing_initialization sloshing_initialize_topography sloshing_initialize_thickness sloshing_initialize_temperature_salinity soliton_initialization mdl soliton_initialize_thickness soliton_initialize_velocity supercritical_initialization supercritical_set_obc_data tidal_bay_initialization register_tidal_bay_obc tidal_bay_obc_end tidal_bay_set_obc_data tidal_forcing user_change_diffusivity user_change_diff range_ok val_weights user_change_diff_init user_change_diff_end user_initialization first_call user_set_coord user_initialize_topography user_initialize_thickness user_initialize_velocity user_init_temperature_salinity user_initialize_sponges user_set_obc_data user_set_rotation write_user_log user_revise_forcing mdl user_alter_forcing user_revise_forcing_init user_shelf_init user_initialize_shelf_mass user_init_ice_thickness user_update_shelf_mass write_user_log user_surface_forcing user_wind_forcing user_buoyancy_forcing user_surface_forcing_init user_tracer_example ntr user_register_tracer_example user_initialize_tracer tracer_column_physics user_tracer_stock user_tracer_surface_state user_tracer_example_end write_ocean_obs_mod open_profile_file write_profile close_profile_file write_ocean_obs_init MOM_surface_forcing_gfdl.F90 ocean_model_MOM.F90 MOM_memory.h NIGLOBAL_ NJGLOBAL_ NK_ NIPROC_ NJPROC_ MAX_FIELDS_ NIHALO_ NJHALO_ SYMMETRIC_MEMORY_ FMS_coupler_util.F90 generic_tracer.F90 generic_tracer_utils.F90 README.md README.md README.md kdtree.f90 ocean_da_core.F90 ocean_da_types.F90 write_ocean_obs.F90 atmos_ocean_fluxes.F90 MESO_surface_forcing.F90 MOM_driver.F90 mom_main MOM_surface_forcing.F90 user_surface_forcing.F90 _ALE.dox _ALE_timestep.dox coord_adapt.F90 coord_hycom.F90 coord_rho.F90 coord_sigma.F90 coord_slight.F90 coord_zlike.F90 MOM_ALE.F90 MOM_regridding.F90 MOM_remapping.F90 P1M_functions.F90 P3M_functions.F90 PCM_functions.F90 PLM_functions.F90 polynomial_functions.F90 PPM_functions.F90 PQM_functions.F90 regrid_consts.F90 regrid_edge_values.F90 regrid_interp.F90 regrid_solvers.F90 _Baroclinic_Momentum.dox _Barotropic_Baroclinic_Coupling.dox _Barotropic_Momentum.dox _Discrete_Coriolis.dox _Discrete_grids.dox _Discrete_OBC.dox _Discrete_PG.dox _Energetic_consistancy.dox _Finite_difference.dox _General_coordinate.dox _Governing.dox _Notation.dox _PPM.dox _Sea_ice.dox _Solar_radiation.dox _Specifics.dox _Timestep_Overview.dox MOM.F90 MOM_barotropic.F90 NIMEMW_ NJMEMW_ NIMEMBW_ NJMEMBW_ SZIW_ SZJW_ SZIBW_ SZJBW_ MOM_boundary_update.F90 MOM_checksum_packages.F90 MOM_continuity.F90 MOM_continuity_PPM.F90 MOM_CoriolisAdv.F90 MOM_density_integrals.F90 MOM_dynamics_split_RK2.F90 MOM_dynamics_unsplit.F90 MOM_dynamics_unsplit_RK2.F90 MOM_forcing_type.F90 locmsg MOM_grid.F90 MOM_interface_heights.F90 MOM_isopycnal_slopes.F90 MOM_open_boundary.F90 interpret_int_expr MOM_PressureForce.F90 MOM_PressureForce_FV.F90 MOM_PressureForce_Montgomery.F90 MOM_transcribe_grid.F90 MOM_unit_tests.F90 MOM_variables.F90 MOM_verticalGrid.F90 MOM_debugging.F90 MOM_diagnostics.F90 MOM_obsolete_diagnostics.F90 MOM_obsolete_params.F90 MOM_PointAccel.F90 MOM_sum_output.F90 MOM_wave_speed.F90 MOM_wave_structure.F90 _Equation_of_State.dox MOM_EOS.F90 MOM_EOS_linear.F90 MOM_EOS_NEMO.F90 MOM_EOS_TEOS10.F90 MOM_EOS_UNESCO.F90 MOM_EOS_Wright.F90 MOM_TFreeze.F90 _Diagnostics.dox _Domain_decomposition.dox _Global_grids.dox _Horizontal_indexing.dox _Parallel_IO.dox _Regional_grids.dox _Runtime_parameter_system.dox _Testing.dox _Vertical_grids.dox MOM_array_transform.F90 MOM_checksums.F90 subchk substats subchk substats subchk substats subchk substats subchk substats subchk substats subchk substats subchk substats subchk substats MOM_coms.F90 MOM_constants.F90 MOM_cpu_clock.F90 MOM_diag_manager_wrapper.F90 MOM_diag_mediator.F90 IMPLIES MAX_DSAMP_LEV MOM_diag_remap.F90 MOM_diag_vkernels.F90 MOM_document.F90 MOM_domains.F90 MOM_dyn_horgrid.F90 MOM_error_handler.F90 MOM_file_parser.F90 MOM_get_input.F90 MOM_hor_index.F90 MOM_horizontal_regridding.F90 MOM_intrinsic_functions.F90 MOM_io.F90 MOM_memory_macros.h DEALLOC_ ALLOC_ ALLOCABLE_ PTR_ TO_NULL_ NIMEM_ NJMEM_ NIMEMB_PTR_ NJMEMB_PTR_ NIMEMB_ NJMEMB_ NIMEMB_SYM_ NJMEMB_SYM_ NKMEM_ NKMEM0_ NK_INTERFACE_ C1_ C2_ C3_ SZI_ SZJ_ SZK_ SZK0_ SZIB_ SZJB_ SZIBS_ SZJBS_ SZDI_ SZDIB_ SZDJ_ SZDJB_ MOM_random.F90 MOM_restart.F90 MOM_safe_alloc.F90 MOM_spatial_means.F90 MOM_string_functions.F90 MOM_time_manager.F90 MOM_transform_FMS.F90 MOM_unit_scaling.F90 MOM_write_cputime.F90 version_variable.h character MOM_ice_shelf.F90 GRID_SYM_ MOM_ice_shelf_dynamics.F90 MOM_ice_shelf_initialize.F90 MOM_ice_shelf_state.F90 MOM_marine_ice.F90 user_shelf_init.F90 MOM_coord_initialization.F90 MOM_fixed_initialization.F90 MOM_grid_initialize.F90 MOM_shared_initialization.F90 MOM_state_initialization.F90 my_psi MOM_tracer_initialization_from_Z.F90 MOM_oda_driver.F90 MOM_hor_visc.F90 MOM_internal_tides.F90 MOM_lateral_mixing_coeffs.F90 MOM_MEKE.F90 MOM_MEKE_types.F90 MOM_mixed_layer_restrat.F90 MOM_thickness_diffuse.F90 MOM_tidal_forcing.F90 _CVMix_KPP.dox MOM_ALE_sponge.F90 MOM_bkgnd_mixing.F90 MOM_bulk_mixed_layer.F90 MOM_CVMix_conv.F90 MOM_CVMix_ddiff.F90 MOM_CVMix_KPP.F90 __DO_SAFETY_CHECKS__ MOM_CVMix_shear.F90 MOM_diabatic_aux.F90 MOM_diabatic_driver.F90 MOM_diapyc_energy_req.F90 MOM_energetic_PBL.F90 MOM_entrain_diffusive.F90 MOM_full_convection.F90 MOM_geothermal.F90 MOM_internal_tide_input.F90 MOM_kappa_shear.F90 MOM_opacity.F90 MOM_regularize_layers.F90 MOM_set_diffusivity.F90 MOM_set_viscosity.F90 MOM_sponge.F90 MOM_tidal_mixing.F90 MOM_vert_friction.F90 _Advection.dox _Discrete_tracer.dox _Horizontal_diffusion.dox _Passive_tracer.dox _Tracer_fluxes.dox _Tracer_timestep.dox _Tracer_Transport.dox _Vertical_diffusion.dox advection_test_tracer.F90 boundary_impulse_tracer.F90 DOME_tracer.F90 dye_example.F90 dyed_obc_tracer.F90 ideal_age_example.F90 ISOMIP_tracer.F90 MOM_generic_tracer.F90 _ALLOCATED MOM_lateral_boundary_diffusion.F90 MOM_neutral_diffusion.F90 MOM_OCMIP2_CFC.F90 MOM_offline_aux.F90 MOM_offline_main.F90 MOM_tracer_advect.F90 MOM_tracer_diabatic.F90 MOM_tracer_flow_control.F90 MOM_tracer_hor_diff.F90 MOM_tracer_registry.F90 MOM_tracer_Z_init.F90 oil_tracer.F90 pseudo_salt_tracer.F90 RGC_tracer.F90 tracer_example.F90 adjustment_initialization.F90 baroclinic_zone_initialization.F90 basin_builder.F90 benchmark_initialization.F90 BFB_initialization.F90 BFB_surface_forcing.F90 circle_obcs_initialization.F90 dense_water_initialization.F90 DOME2d_initialization.F90 DOME_initialization.F90 dumbbell_initialization.F90 dumbbell_surface_forcing.F90 dyed_channel_initialization.F90 dyed_obcs_initialization.F90 external_gwave_initialization.F90 Idealized_Hurricane.F90 ISOMIP_initialization.F90 Kelvin_initialization.F90 lock_exchange_initialization.F90 MOM_controlled_forcing.F90 MOM_wave_interface.F90 Neverworld_initialization.F90 Phillips_initialization.F90 RGC_initialization.F90 Rossby_front_2d_initialization.F90 SCM_CVMix_tests.F90 seamount_initialization.F90 shelfwave_initialization.F90 sloshing_initialization.F90 soliton_initialization.F90 supercritical_initialization.F90 tidal_bay_initialization.F90 user_change_diffusivity.F90 user_initialization.F90 user_revise_forcing.F90 ALE ALE_Timestep Baroclinic_Momentum_Equations Barotropic_Baroclinic_Coupling Barotropic_Momentum_Equations Discrete_Coriolis Discrete_Grids Discrete_OBC Discrete_PG Energetic_Consistency Finite_Difference_Operators General_Coordinate Governing_Equations Notation PPM Sea_Ice Solar_Radiation Specifics Timestep_Overview Equation_of_State Diagnostics Domain_Decomposition Global_Grids Horizontal_Indexing Parallel_IO Regional_Grids Runtime_Parameter_System Testing Vertical_Grids CVMix_KPP Tracer_Advection Discrete_Tracer Horizontal_Diffusion Passive_Tracers Tracer_Fluxes Tracer_Timestep Tracer_Transport_Equations Vertical_Diffusion md__home_cermak_src_MOM6.devrob_config_src_external_GFDL_ocean_BGC_README md__home_cermak_src_MOM6.devrob_config_src_external_ODA_hooks_README md__home_cermak_src_MOM6.devrob_config_src_external_README todo citelist /home/cermak/src/MOM6.devrob/src/ALE /home/cermak/src/MOM6.devrob/config_src /home/cermak/src/MOM6.devrob/src/core /home/cermak/src/MOM6.devrob/config_src/coupled_driver /home/cermak/src/MOM6.devrob/src/diagnostics /home/cermak/src/MOM6.devrob/config_src/dynamic_symmetric /home/cermak/src/MOM6.devrob/src/equation_of_state /home/cermak/src/MOM6.devrob/config_src/external /home/cermak/src/MOM6.devrob/src/framework /home/cermak/src/MOM6.devrob/config_src/external/GFDL_ocean_BGC /home/cermak/src/MOM6.devrob/src/ice_shelf /home/cermak/src/MOM6.devrob/src/initialization /home/cermak/src/MOM6.devrob/src/parameterizations/lateral /home/cermak/src/MOM6.devrob/src/ocean_data_assim /home/cermak/src/MOM6.devrob/config_src/external/ODA_hooks /home/cermak/src/MOM6.devrob/src/parameterizations /home/cermak/src/MOM6.devrob/config_src/solo_driver /home/cermak/src/MOM6.devrob/src /home/cermak/src/MOM6.devrob/src/tracer /home/cermak/src/MOM6.devrob/src/user /home/cermak/src/MOM6.devrob/src/parameterizations/vertical